genome.fa.s12.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  170  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55657437--55657527	44	2.1	41	82	8	101	40	0	3	56	1.16
55657437--55657527	20	4.2	20	80	13	92	40	0	3	56	1.16
55659141--55659219	30	2.6	30	83	0	104	30	22	24	22	1.99
55661102--55661155	26	2.1	26	100	0	108	35	7	7	50	1.59
55661879--55661926	21	2.2	23	88	7	73	37	0	0	62	0.95
55661893--55661944	14	3.5	14	75	14	59	36	0	0	63	0.95
55661882--55661945	31	2.1	31	100	0	128	35	0	0	64	0.94
55661913--55661967	20	2.6	21	82	8	76	36	1	0	61	1.06
55662107--55662142	15	2.5	15	91	8	58	58	0	0	41	0.98
55662124--55662164	22	2.0	22	90	9	68	48	0	4	46	1.23
55662222--55662308	16	5.7	16	68	21	62	52	1	1	44	1.15
55662227--55662323	43	2.3	43	79	10	112	52	0	2	45	1.12
55662283--55662330	22	2.1	24	84	7	64	56	0	2	41	1.11
55662405--55662464	21	2.7	21	87	7	75	75	3	6	15	1.15
55662399--55662456	24	2.5	23	86	10	82	77	3	3	15	1.04
55666287--55666316	9	3.3	9	100	0	60	76	0	0	23	0.78
55668070--55668129	22	2.8	22	94	2	104	43	13	30	13	1.82
55668993--55669048	20	2.8	19	71	15	51	33	3	1	60	1.24
55676007--55676181	46	3.8	46	95	1	298	29	28	20	21	1.98
55690230--55690337	44	2.3	45	81	10	128	35	23	12	28	1.92
55690256--55690354	44	2.3	44	89	3	148	35	20	15	29	1.93
55690841--55690881	21	2.0	20	90	4	64	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55695129--55695171	17	2.4	18	82	14	54	69	0	30	0	0.88
55695522--55695555	11	3.0	11	91	4	50	55	0	17	26	1.42
55696306--55696406	47	2.1	47	81	3	114	22	22	23	30	1.99
55696470--55696551	36	2.3	36	82	0	101	35	9	17	37	1.82
55696470--55696549	18	4.4	18	80	4	81	35	10	16	38	1.82
55696532--55696585	28	1.9	28	81	7	65	35	1	18	44	1.61
55697416--55697471	21	2.7	21	82	0	67	21	23	30	25	1.99
55701281--55701394	46	2.4	47	82	7	140	35	21	14	29	1.92
55701896--55701936	21	2.0	20	90	4	64	48	21	0	29	1.50
55708998--55709101	53	2.0	53	96	0	190	47	15	9	27	1.77
55715648--55715698	26	2.0	26	84	3	68	27	25	19	27	1.99
55715691--55715780	23	3.8	22	71	15	65	34	17	23	24	1.96
55717067--55717107	21	2.0	21	86	9	59	14	34	12	39	1.84
55742948--55743017	34	2.1	34	94	0	122	17	30	25	27	1.97
55764882--55764948	33	2.0	33	100	0	134	35	8	11	43	1.73
55770440--55770703	40	6.7	40	89	5	360	25	27	21	25	1.99
55778490--55778722	42	5.6	42	96	1	393	24	28	19	27	1.99
55785140--55785220	31	2.6	31	84	5	92	14	34	30	19	1.92
55785154--55785220	32	2.2	30	86	5	89	17	38	26	16	1.91
55794561--55794610	3	16.3	3	79	4	55	62	4	32	2	1.25
55794750--55794786	18	2.2	18	85	9	51	27	0	8	64	1.21
55794988--55795293	95	3.0	95	79	16	317	32	1	16	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55794768--55795295	214	2.4	209	85	7	677	32	1	16	50	1.54
55795088--55795331	119	2.2	115	82	13	303	32	0	15	51	1.50
55795372--55795403	15	2.1	16	94	5	57	37	3	6	53	1.42
55797470--55797535	33	2.0	33	84	0	87	15	46	12	25	1.80
55801155--55801241	27	3.2	26	79	6	93	31	31	21	16	1.95
55807087--55807131	18	2.5	18	85	0	54	26	37	22	13	1.91
55811519--55811599	31	2.6	31	94	0	144	23	28	18	29	1.98
55811818--55811887	25	2.8	25	93	0	113	24	22	25	27	2.00
55811920--55811983	11	6.1	11	82	8	80	29	14	17	39	1.88
55811933--55811983	21	2.4	21	90	6	77	29	15	17	37	1.91
55811920--55811983	32	2.0	31	87	3	92	29	14	17	39	1.88
55811945--55811991	21	2.2	22	84	3	60	34	17	14	34	1.90
55814443--55814481	20	2.0	20	90	5	62	51	33	0	15	1.44
55815860--55816319	230	2.0	230	96	0	857	32	23	16	26	1.96
55823804--55823872	34	2.0	34	100	0	138	33	8	20	37	1.83
55827735--55827852	42	2.8	42	85	1	146	27	13	27	30	1.94
55831092--55831210	59	2.0	59	98	0	229	26	11	15	45	1.81
55832231--55832279	22	2.2	22	100	0	98	22	12	22	42	1.86
55835836--55835888	27	2.0	27	88	0	79	28	26	13	32	1.93
55835972--55836038	22	3.1	22	81	10	84	50	0	1	47	1.10
55835970--55836048	22	3.7	21	73	9	61	49	0	2	48	1.14
55836104--55836147	13	3.7	13	71	22	51	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55836096--55836151	22	2.5	22	88	5	76	58	0	0	41	0.98
55836096--55836161	22	2.9	21	82	15	69	57	1	1	39	1.17
55844144--55844186	14	2.7	16	79	20	54	30	0	11	58	1.34
55844334--55844382	26	2.0	24	88	8	71	63	2	0	34	1.06
55856026--55856063	17	2.4	17	91	8	62	55	0	13	31	1.38
55857694--55857731	4	9.5	4	83	11	51	23	2	0	73	0.95
55857963--55858011	22	2.2	22	92	0	80	36	24	4	34	1.75
55863725--55863938	95	2.2	99	85	5	285	28	17	30	23	1.97
55863725--55864000	50	5.7	49	72	10	201	26	17	30	25	1.97
55873329--55873517	50	3.8	49	79	4	202	26	18	31	23	1.98
55882317--55882366	20	2.5	20	93	0	82	10	30	38	22	1.86
55883220--55883386	52	3.2	52	82	5	185	32	28	14	23	1.94
55887358--55887493	39	3.3	38	72	16	112	33	15	21	29	1.94
55887794--55887844	21	2.4	21	83	3	57	25	1	21	50	1.59
55888281--55888314	14	2.4	14	90	0	50	11	0	44	44	1.40
55888391--55888422	15	2.1	15	94	0	55	65	0	6	28	1.16
55889240--55889327	37	2.4	37	90	0	131	13	48	11	26	1.76
55901264--55901300	14	2.5	15	91	8	67	54	0	10	35	1.36
55902742--55902775	17	2.0	17	100	0	68	52	5	5	35	1.50
55902817--55902988	30	5.5	30	75	17	138	47	14	2	36	1.57
55902807--55902959	46	3.2	46	88	6	234	47	14	1	36	1.56
55902817--55903051	127	1.9	125	93	1	407	48	14	2	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55902944--55903051	46	2.3	46	95	0	198	50	15	1	32	1.55
55908564--55908606	21	2.0	21	86	0	59	27	16	51	4	1.64
55908829--55908914	31	2.7	31	85	3	109	15	6	20	56	1.61
55912754--55912809	26	2.2	26	93	6	96	32	7	23	37	1.82
55919801--55919908	26	4.2	26	93	0	189	32	7	24	36	1.83
55921530--55921634	27	3.9	27	86	9	135	19	24	21	34	1.96
55924461--55924512	27	2.0	27	92	3	88	65	5	3	25	1.32
55931517--55931773	40	6.5	40	95	1	448	24	23	27	24	2.00
55933605--55933714	43	2.6	43	82	2	123	27	27	17	28	1.97
55935320--55935416	40	2.4	42	81	8	121	23	15	28	31	1.95
55941187--55941249	25	2.6	25	94	2	110	4	3	22	69	1.21
55943888--55943945	21	2.8	20	89	5	89	6	1	22	68	1.22
55949302--55949554	70	3.6	70	85	4	298	19	17	24	37	1.94
55951538--55951685	43	3.4	43	77	7	158	31	25	16	26	1.97
55955117--55955300	40	4.7	40	82	8	209	26	22	26	25	2.00
55955169--55955333	79	2.1	79	82	8	194	26	21	27	24	1.99
55961121--55961199	29	2.7	30	80	13	101	29	30	16	24	1.96
55968452--55968509	29	2.0	29	93	0	98	53	8	12	25	1.66
55978815--55978877	28	2.2	28	100	0	126	36	0	6	57	1.24
55978818--55978888	10	7.3	10	80	17	87	30	0	7	61	1.22
55980124--55980159	15	2.5	15	90	4	56	27	0	5	66	1.13
55984328--55984385	19	3.1	19	66	14	57	48	6	15	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55984330--55984403	37	2.0	37	97	0	139	48	6	13	31	1.68
55992653--55992825	46	3.7	46	77	13	192	29	30	19	21	1.97
55992660--55992831	93	1.8	93	94	0	308	28	29	20	21	1.98
56003548--56003612	33	2.0	33	93	0	112	16	18	27	36	1.93
56007563--56007640	18	4.6	18	68	12	58	60	2	5	32	1.32
56007550--56007647	49	2.0	49	97	0	187	58	3	6	32	1.38
56007755--56007828	24	3.1	24	68	0	67	45	2	2	48	1.30
56016460--56017279	2	411.0	2	98	0	1590	50	0	49	0	1.03
56019016--56019058	12	3.6	12	78	9	52	67	0	4	27	1.10
56021767--56021879	42	2.7	43	80	12	142	26	26	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276