genome.fa.s12.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  110  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34895880--34895994	55	2.1	56	83	8	146	34	21	24	19	1.96
34895905--34895994	27	3.2	27	85	7	119	32	23	24	20	1.98
34896100--34896164	28	2.3	28	94	0	112	30	7	27	33	1.85
34903792--34903882	28	3.2	28	90	4	139	31	23	24	20	1.98
34903988--34904051	28	2.3	28	89	5	94	31	7	28	32	1.85
34905822--34905961	37	3.8	37	92	0	235	25	30	19	25	1.98
34906102--34906622	48	10.9	48	93	0	880	31	26	5	36	1.79
34917757--34917963	49	4.2	49	89	6	323	33	7	28	29	1.85
34918247--34919256	47	21.5	47	98	0	1871	30	8	31	29	1.87
34922916--34922993	35	2.2	36	95	4	149	32	0	7	60	1.25
34923020--34923061	12	3.4	12	83	6	57	35	4	0	59	1.19
34923089--34923136	23	2.2	23	85	10	66	22	2	2	72	1.05
34923227--34923339	31	3.6	29	73	15	84	32	9	0	57	1.31
34923235--34923287	27	2.0	26	81	3	61	35	9	0	54	1.33
34926945--34926983	14	2.7	14	92	4	60	10	43	0	46	1.37
34927422--34927546	49	2.6	49	82	3	137	22	30	20	26	1.98
34927599--34927778	93	1.9	92	84	6	238	23	26	18	31	1.98
34928435--34928473	20	2.0	20	85	10	53	35	20	0	43	1.52
34931462--34931541	40	2.0	40	97	0	151	37	16	20	26	1.93
34943766--34943919	43	3.7	40	83	9	168	31	24	15	29	1.96
34943766--34943920	84	1.8	85	83	9	210	30	24	15	29	1.96
34946279--34946305	13	2.1	13	100	0	54	14	33	37	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34946394--34946420	14	1.9	14	100	0	54	40	0	51	7	1.30
34948867--34948983	40	3.0	40	88	3	148	28	25	20	25	1.99
34950018--34950249	56	4.1	56	98	0	446	22	21	9	45	1.81
34972113--34972153	21	2.0	22	90	9	68	63	0	24	12	1.28
34974218--34974360	41	3.4	42	80	6	146	32	27	16	24	1.96
34986455--34986573	43	2.8	42	82	2	148	30	14	26	29	1.95
34993180--34993208	5	5.8	5	100	0	58	82	0	0	17	0.66
35005040--35005318	140	2.0	140	98	0	540	35	13	26	24	1.92
35008674--35008743	23	3.0	23	77	8	79	38	12	14	34	1.84
35008783--35008816	11	3.1	11	91	0	50	73	20	0	5	1.04
35009547--35009571	2	12.5	2	100	0	50	52	0	48	0	1.00
35009881--35009907	7	3.9	7	100	0	54	25	0	0	74	0.83
35017923--35018100	38	4.6	38	87	1	230	19	21	25	33	1.97
35025648--35025858	38	5.6	38	96	1	379	15	22	26	36	1.94
35025648--35025858	75	2.8	76	96	0	379	15	22	26	36	1.94
35027933--35028084	78	1.9	78	90	2	243	30	22	15	30	1.95
35028049--35028186	40	3.5	40	87	0	195	36	21	12	29	1.90
35029829--35029861	10	3.2	10	95	4	57	69	0	0	30	0.88
35030656--35030689	13	2.6	13	95	0	59	29	35	26	8	1.87
35031676--35031905	49	4.7	50	76	3	225	22	27	19	30	1.98
35031681--35031902	98	2.3	98	87	0	327	22	27	19	31	1.98
35033996--35034037	18	2.3	18	83	0	57	50	11	4	33	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35034007--35034045	18	2.2	18	90	0	60	48	20	7	23	1.75
35034178--35034219	18	2.3	19	84	12	52	69	0	4	26	1.08
35038867--35038915	18	2.8	18	75	6	57	65	0	4	30	1.11
35039284--35039343	6	8.9	7	80	14	56	41	0	0	58	0.98
35042225--35042357	47	2.8	47	94	0	221	40	22	11	25	1.87
35045912--35045953	2	21.0	2	100	0	84	0	50	0	50	1.00
35050131--35050238	43	2.5	43	87	0	126	28	14	22	34	1.94
35050142--35050297	43	3.7	43	80	7	174	27	16	24	31	1.96
35054096--35054200	39	2.6	39	86	5	122	24	22	27	24	2.00
35054056--35054219	40	4.1	40	80	12	169	25	23	27	24	2.00
35054056--35054206	79	1.9	80	82	6	191	25	23	27	23	2.00
35056066--35056103	19	2.0	19	94	0	67	23	18	15	42	1.89
35058720--35058765	24	1.9	24	82	8	58	21	6	26	45	1.76
35061765--35061831	31	2.2	31	83	5	82	28	2	19	49	1.63
35061806--35061879	32	2.3	32	77	6	80	31	2	16	50	1.59
35065785--35065861	40	1.9	40	81	0	91	16	15	31	36	1.91
35072922--35072998	40	1.9	40	84	5	102	20	14	29	35	1.92
35073767--35073828	24	2.5	24	86	5	70	37	6	30	25	1.81
35094654--35094691	19	2.0	19	94	0	67	31	10	23	34	1.89
35097510--35097545	18	2.0	18	88	0	54	52	19	8	19	1.70
35100677--35100733	28	2.0	28	96	0	105	12	17	14	56	1.68
35101320--35101364	3	15.0	3	100	0	90	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35106645--35106680	19	1.9	18	88	5	54	22	5	2	69	1.22
35107334--35107368	9	3.9	9	88	0	52	45	0	2	51	1.16
35109203--35109406	100	2.0	100	82	1	248	42	16	10	30	1.82
35109203--35109406	50	4.1	50	73	3	187	42	16	10	30	1.82
35117073--35117242	50	3.5	48	75	7	155	42	17	9	30	1.81
35122080--35122164	29	3.0	29	81	8	111	25	12	29	31	1.93
35122644--35123573	465	2.0	465	99	0	1842	24	14	23	36	1.92
35126142--35126220	41	1.9	41	94	0	140	24	15	18	41	1.89
35126540--35126693	67	2.3	67	78	4	168	18	33	23	25	1.97
35127551--35127724	41	4.2	41	76	1	116	33	14	27	24	1.95
35129888--35129956	22	3.0	23	76	4	77	14	18	21	44	1.85
35134692--35134862	85	2.0	85	97	0	324	28	8	29	33	1.87
35140964--35141019	28	2.0	28	92	0	94	57	0	14	28	1.38
35142481--35142599	60	2.0	60	94	0	211	21	27	20	30	1.98
35143785--35144291	75	6.7	75	75	4	383	25	19	14	40	1.90
35143785--35144120	39	8.9	39	66	14	150	24	19	15	40	1.90
35143785--35144290	150	3.4	149	80	3	512	25	19	14	40	1.90
35143964--35144090	36	3.5	35	77	10	110	24	22	15	37	1.93
35143994--35144248	36	6.8	35	72	15	136	25	20	14	40	1.89
35144519--35144560	21	2.0	21	100	0	84	42	4	14	38	1.66
35144521--35144566	21	2.2	21	92	0	74	45	8	10	34	1.70
35154095--35154367	137	2.0	137	93	0	465	39	21	8	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35154959--35155025	28	2.6	25	75	13	64	31	20	0	47	1.51
35156189--35156219	14	2.3	13	94	5	53	3	22	0	74	0.96
35157565--35157600	18	1.9	19	88	5	56	63	2	0	33	1.08
35160769--35160902	69	1.9	69	89	0	205	35	14	22	26	1.93
35166250--35166289	21	1.9	21	100	0	80	20	30	40	10	1.85
35167446--35167546	47	2.2	46	80	8	107	24	29	15	29	1.96
35167610--35167767	41	3.7	41	73	14	158	22	30	18	27	1.98
35167569--35167773	88	2.3	88	98	0	392	22	31	18	27	1.97
35167571--35167727	47	3.5	48	73	14	179	22	32	17	27	1.96
35173457--35173508	25	2.1	25	85	0	68	38	15	9	36	1.80
35178780--35178877	43	2.3	42	80	7	108	40	22	14	22	1.90
35178815--35179056	43	5.6	42	77	4	187	38	18	15	27	1.90
35178823--35179061	86	2.8	86	81	1	264	39	17	15	28	1.90
35178819--35179053	129	1.8	129	81	0	290	38	17	15	28	1.90
35178850--35179063	86	2.5	86	81	1	268	39	16	14	29	1.89
35180003--35180043	16	2.7	15	81	7	55	39	17	7	36	1.77
35181613--35181726	27	4.2	27	77	5	97	38	19	21	21	1.93
35181611--35181726	54	2.2	53	79	6	126	37	20	20	20	1.94
35181855--35181914	27	2.2	27	82	8	68	28	3	21	46	1.67
35186152--35186201	20	2.5	20	80	3	55	48	10	12	30	1.73
35190842--35190891	20	2.5	20	80	3	55	48	10	12	30	1.73
35200307--35200405	48	2.1	48	98	0	189	26	14	30	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35201616--35201658	18	2.4	18	76	0	50	16	37	2	44	1.60
35202187--35202239	24	2.2	24	86	0	70	54	9	3	32	1.50
35204137--35204189	24	2.2	24	86	0	70	54	9	3	32	1.50
35216107--35216184	25	3.2	25	83	5	97	29	17	25	26	1.98
35217058--35217098	21	2.0	21	90	9	66	26	9	4	58	1.50
35219390--35219448	30	1.9	31	86	10	86	47	5	20	27	1.71
35219478--35219830	176	2.0	176	99	0	697	44	6	22	26	1.77
35219851--35219899	21	2.3	21	86	6	64	30	0	4	65	1.11
35219867--35219907	13	3.0	13	85	7	55	26	0	0	73	0.84
35220446--35220489	23	2.0	22	82	13	54	52	2	11	34	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276