genome.fa.s12.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  128  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41347487--41347673	57	3.2	57	90	3	286	19	17	33	28	1.95
41350385--41350570	93	2.0	93	95	0	336	33	12	20	33	1.91
41352705--41352783	28	2.8	28	86	0	104	34	11	25	29	1.91
41355319--41355356	6	6.3	6	88	11	60	2	13	0	84	0.73
41357061--41357098	19	2.0	20	85	15	53	36	0	23	39	1.55
41380214--41380334	43	2.8	43	76	7	113	28	20	19	30	1.97
41381579--41381699	43	2.8	43	76	7	113	28	20	19	30	1.97
41392702--41392750	26	1.9	26	91	4	82	34	0	4	61	1.15
41399488--41399532	22	2.0	22	95	0	81	68	11	8	11	1.39
41401245--41401303	22	2.7	21	80	12	66	61	0	0	38	0.96
41401245--41401291	7	6.6	7	83	13	60	57	0	0	42	0.98
41402365--41402409	10	4.5	10	88	5	65	22	6	2	68	1.24
41409325--41409393	34	2.0	34	94	0	120	24	23	28	23	1.99
41413258--41413333	38	2.0	38	97	0	143	30	19	26	23	1.98
41432929--41433149	40	5.6	40	90	2	349	23	23	26	27	2.00
41432931--41433148	79	2.8	79	91	3	341	22	23	26	27	2.00
41432929--41433149	119	1.9	119	90	3	356	23	23	26	27	2.00
41439044--41439356	73	4.3	72	82	3	389	54	14	5	25	1.62
41439785--41439819	18	1.9	18	88	0	52	45	14	8	31	1.75
41442404--41442436	15	2.2	15	100	0	66	51	9	18	21	1.73
41445807--41445891	40	2.2	39	85	4	109	27	5	1	65	1.22
41455557--41455591	14	2.5	14	90	0	52	60	0	5	34	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41458176--41458449	104	2.6	101	84	3	314	25	21	27	24	2.00
41458176--41458538	104	3.5	103	78	8	281	26	22	27	23	1.99
41459696--41459753	10	5.7	11	82	10	63	65	3	10	20	1.38
41459696--41459753	20	2.9	19	85	10	73	65	3	10	20	1.38
41459695--41459752	30	1.9	30	86	6	82	65	3	10	20	1.38
41460420--41460451	3	10.7	3	93	0	55	31	3	0	65	1.08
41460438--41460636	99	2.0	101	87	2	285	32	25	15	27	1.95
41461460--41461491	16	2.1	15	94	5	55	18	18	34	25	1.94
41461787--41461817	15	2.1	14	94	5	53	77	0	0	22	0.77
41463203--41463280	33	2.4	33	88	0	120	25	12	25	35	1.92
41480596--41480635	21	1.9	21	85	10	55	30	0	5	65	1.14
41483307--41483359	28	1.9	28	96	3	99	22	32	20	24	1.98
41483307--41483366	27	2.2	28	90	3	95	21	36	18	23	1.95
41483307--41483377	27	2.6	27	86	6	81	22	36	18	22	1.95
41485806--41486020	39	5.5	39	97	0	403	18	23	28	28	1.98
41485806--41486706	117	7.5	117	86	7	1191	18	23	28	30	1.97
41486001--41486038	20	1.9	20	100	0	76	21	26	21	31	1.98
41485962--41486079	59	2.0	59	98	0	227	18	24	27	29	1.98
41485923--41486118	98	2.0	98	97	0	374	18	23	28	29	1.98
41485884--41486157	137	2.0	137	95	0	494	18	23	28	29	1.97
41486021--41486666	39	16.5	39	98	0	1220	18	22	28	30	1.97
41489538--41489621	42	2.0	42	100	0	168	50	19	7	23	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41495245--41495559	46	6.8	46	82	9	399	29	28	20	22	1.98
41495252--41495559	93	3.3	93	93	3	489	28	28	20	22	1.98
41495299--41495562	139	1.9	138	91	5	433	29	27	20	23	1.98
41506790--41506856	29	2.3	29	81	0	80	22	29	20	26	1.99
41516203--41516426	47	4.8	47	79	11	205	23	29	19	28	1.98
41516205--41516470	46	5.7	47	76	13	185	24	28	19	27	1.98
41516348--41516470	47	2.6	44	79	16	124	25	29	18	26	1.98
41517163--41517187	12	2.1	12	100	0	50	60	16	8	16	1.58
41523620--41523838	46	4.7	46	78	15	200	23	28	19	27	1.98
41524500--41524524	12	2.1	12	100	0	50	60	16	8	16	1.58
41525313--41525410	44	2.2	45	87	3	135	48	11	20	19	1.79
41527850--41527882	10	3.3	10	95	0	57	6	36	57	0	1.23
41528176--41528239	31	2.1	31	91	8	105	59	10	3	26	1.46
41529848--41529882	5	6.8	5	93	6	61	77	2	0	20	0.90
41541311--41541406	47	2.0	47	97	0	183	42	3	16	37	1.64
41541726--41541761	8	4.3	9	89	10	51	41	0	0	58	0.98
41542691--41542727	18	2.1	18	100	0	74	27	18	16	37	1.92
41545553--41545594	21	2.0	21	85	0	57	40	7	19	33	1.78
41556826--41556943	43	2.8	42	74	7	121	33	25	16	24	1.96
41562123--41562186	24	2.6	25	82	4	78	32	32	14	20	1.92
41562210--41562255	24	1.9	24	82	8	58	32	26	10	30	1.90
41564514--41564559	23	2.0	23	91	0	74	41	4	39	15	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41565972--41566034	26	2.4	26	82	12	83	20	19	22	38	1.94
41570687--41570753	6	11.2	6	76	6	55	73	2	8	14	1.20
41570664--41570707	18	2.5	17	82	7	52	72	6	6	13	1.25
41572367--41572414	25	1.9	25	100	0	96	62	4	10	22	1.44
41578159--41578300	27	5.3	26	83	5	160	35	21	19	23	1.96
41578159--41578309	81	1.9	80	85	1	212	35	21	19	23	1.96
41578131--41578300	54	3.2	54	83	2	200	37	20	18	24	1.94
41581654--41581921	119	2.2	120	91	2	423	24	21	27	26	1.99
41581654--41581921	40	6.7	40	89	2	405	24	21	27	26	1.99
41581654--41581953	119	2.5	120	86	6	421	25	21	27	26	2.00
41587375--41587549	49	3.6	48	74	6	140	24	25	20	29	1.99
41587375--41587551	98	1.8	97	82	6	232	24	25	20	29	1.99
41597048--41597149	44	2.3	44	91	3	161	26	19	24	29	1.98
41615755--41615792	20	1.9	20	88	0	58	18	13	31	36	1.89
41615951--41616142	50	3.9	50	88	1	262	26	20	26	27	1.99
41617322--41617361	21	1.9	21	85	10	55	22	2	25	50	1.62
41620258--41620291	16	2.1	16	100	0	68	47	11	23	17	1.81
41621556--41621613	20	2.7	21	78	10	64	24	15	15	44	1.85
41626487--41626576	41	2.2	41	91	0	144	30	20	4	45	1.70
41628687--41628722	15	2.4	15	100	0	72	30	19	16	33	1.94
41628769--41628949	40	4.6	40	80	11	194	24	27	20	27	1.99
41628802--41628949	40	3.7	40	87	5	219	25	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41636854--41637082	40	5.7	40	98	0	431	25	27	21	24	2.00
41663643--41663874	40	5.8	39	89	4	320	26	28	21	23	1.99
41665289--41665979	47	14.6	47	92	0	1094	27	29	9	33	1.88
41667958--41668071	27	4.2	27	81	2	113	31	24	7	36	1.82
41668107--41668290	27	6.7	27	72	9	106	40	17	8	32	1.81
41668711--41668757	20	2.3	20	92	0	76	25	23	38	12	1.90
41668720--41668758	20	2.0	20	100	0	78	20	25	38	15	1.92
41669111--41669181	20	3.6	19	83	10	90	39	9	18	32	1.83
41669227--41669349	52	2.4	50	88	8	185	26	21	25	26	1.99
41669227--41669349	26	4.8	26	85	1	160	26	21	25	26	1.99
41669495--41669586	42	2.2	42	88	0	130	30	13	20	35	1.91
41669610--41669719	31	3.5	31	93	0	184	30	16	25	28	1.97
41672063--41672160	27	3.6	27	76	16	80	43	20	7	28	1.78
41672115--41672220	27	3.8	28	75	17	94	45	16	6	31	1.73
41673048--41673114	20	3.3	20	86	12	93	38	10	17	32	1.84
41673164--41673325	52	3.2	52	91	4	242	29	21	21	27	1.99
41673164--41673325	26	6.3	26	87	2	215	29	21	21	27	1.99
41673458--41673549	42	2.2	42	88	0	130	29	14	20	35	1.92
41673573--41673742	31	5.5	31	85	8	249	29	18	25	25	1.98
41673666--41673772	29	3.6	29	78	14	137	29	24	25	20	1.99
41673573--41673776	60	3.4	60	91	4	306	29	19	25	25	1.98
41675677--41675884	104	2.0	104	92	1	346	19	22	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41676093--41676349	27	9.6	27	75	8	132	38	21	8	31	1.83
41676328--41676406	30	2.8	28	73	19	74	41	13	10	34	1.79
41677223--41677278	20	2.8	20	91	0	94	41	10	17	30	1.84
41677328--41677489	26	6.3	26	89	2	233	27	20	22	29	1.99
41677613--41677704	42	2.2	42	90	0	139	30	14	20	34	1.92
41677728--41678023	31	9.5	31	96	0	547	29	15	26	29	1.96
41685734--41685842	28	3.9	28	79	7	96	30	31	13	24	1.94
41687889--41687913	11	2.3	11	100	0	50	8	28	0	64	1.22
41689168--41689216	25	2.0	25	87	0	71	36	8	14	40	1.75
41689864--41689891	10	2.8	10	100	0	56	10	10	7	71	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276