genome.fa.s12.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  159  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51710856--51711039	79	2.3	82	82	11	224	25	27	22	25	2.00
51710856--51711039	40	4.6	41	83	12	199	25	27	22	25	2.00
51712851--51713028	27	6.6	27	79	3	106	28	28	16	26	1.97
51712877--51713027	82	1.9	81	85	4	214	27	27	17	27	1.97
51720934--51721117	79	2.3	81	81	11	213	25	27	21	25	2.00
51720934--51721117	40	4.6	41	82	12	190	25	27	21	25	2.00
51722935--51722964	16	1.9	15	93	6	51	43	0	23	33	1.54
51723096--51723166	35	2.0	35	97	0	133	43	5	15	35	1.70
51730025--51730359	50	6.6	50	76	5	273	27	17	25	29	1.97
51730079--51730319	101	2.4	99	80	4	261	27	18	25	28	1.98
51730028--51730313	150	1.9	152	85	3	398	26	17	25	30	1.97
51730517--51730546	16	1.9	15	93	6	51	43	0	23	33	1.54
51735404--51735503	27	3.6	27	88	8	121	32	28	12	28	1.92
51735406--51735503	28	3.5	28	92	2	153	32	27	12	27	1.92
51738596--51738715	29	4.2	29	82	5	111	30	30	10	27	1.91
51738935--51738981	16	2.9	16	77	0	58	17	21	12	48	1.79
51743139--51743309	29	5.9	29	84	3	179	30	30	13	25	1.94
51743139--51743309	58	3.0	57	81	5	200	30	30	13	25	1.94
51743139--51743298	87	1.8	86	82	4	205	30	30	13	25	1.93
51743529--51743564	16	2.2	16	95	0	63	8	25	19	47	1.77
51748179--51748213	18	2.0	17	88	5	52	57	8	8	25	1.57
51748365--51748421	18	3.2	17	77	20	55	70	0	3	26	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51748389--51748423	3	11.7	3	88	11	54	65	0	0	34	0.93
51748365--51748427	15	4.0	16	75	17	60	69	0	3	26	1.03
51748440--51748478	19	2.1	19	85	9	53	66	5	5	23	1.32
51750634--51750673	19	2.0	20	85	4	55	42	10	25	22	1.84
51754302--51754770	94	5.0	94	98	0	886	30	10	18	40	1.84
51754799--51754862	24	2.7	24	87	4	85	20	15	31	32	1.94
51757507--51757544	4	9.2	4	94	5	67	73	0	2	23	0.95
51757649--51757702	18	3.1	17	76	23	51	70	0	3	25	1.04
51757671--51757702	15	2.1	16	94	5	57	68	0	0	31	0.90
51757715--51757753	19	2.1	19	85	9	53	66	5	5	23	1.32
51761594--51761684	43	2.1	43	83	2	112	26	16	26	30	1.97
51763705--51763921	40	5.5	40	86	3	255	24	23	27	24	2.00
51763705--51763921	79	2.7	78	84	6	260	24	23	27	24	2.00
51785789--51785828	21	2.0	20	90	5	62	20	27	40	12	1.88
51790075--51790204	6	21.0	6	69	17	79	48	13	17	20	1.81
51790084--51790203	31	3.8	31	92	1	168	48	13	18	20	1.81
51790601--51790869	27	10.0	27	78	10	185	27	17	18	36	1.93
51790602--51790904	54	5.6	54	73	14	232	28	16	18	36	1.92
51790602--51790796	81	2.4	81	82	1	239	26	18	17	36	1.94
51790610--51790933	108	3.0	111	85	8	382	28	15	18	37	1.92
51790614--51790823	81	2.6	81	81	4	237	27	16	19	37	1.92
51790754--51791364	54	11.3	53	73	7	338	31	8	20	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51790754--51791364	27	22.6	27	74	7	264	31	8	20	38	1.83
51790727--51790935	108	1.9	108	97	1	393	29	12	18	39	1.88
51790751--51791364	108	5.7	108	76	5	471	31	8	20	38	1.83
51791080--51791364	81	3.5	81	79	7	312	31	7	20	40	1.80
51795564--51795835	134	2.0	134	94	0	472	37	17	18	26	1.93
51800473--51800534	24	2.6	24	94	0	115	33	0	14	51	1.43
51800511--51800809	54	5.7	52	68	10	185	44	6	7	41	1.58
51800532--51800864	106	3.1	106	94	2	551	44	7	6	41	1.59
51801607--51801653	24	1.9	24	83	12	60	31	6	6	55	1.51
51804561--51804598	14	2.7	14	88	8	51	60	0	5	34	1.19
51804541--51804597	24	2.3	24	82	14	64	59	0	3	36	1.14
51811244--51811280	14	2.6	15	83	12	51	56	0	5	37	1.22
51818935--51819051	47	2.5	47	94	0	198	29	28	19	22	1.98
51828011--51828075	32	2.0	32	93	0	112	27	30	15	26	1.96
51831882--51831936	28	2.0	28	88	0	83	20	25	10	43	1.84
51836875--51836899	13	1.9	13	100	0	50	72	0	20	8	1.10
51837318--51837610	42	7.0	42	89	0	424	23	19	21	35	1.96
51837554--51837667	57	2.0	57	88	6	169	21	21	20	37	1.94
51838479--51838887	155	2.7	149	84	11	471	41	4	10	44	1.59
51838842--51838891	20	2.5	20	86	0	64	48	4	8	40	1.51
51839488--51839523	10	3.5	10	85	7	54	16	2	2	77	1.00
51850970--51851099	47	2.8	47	83	0	152	22	16	29	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51855133--51855214	42	1.9	42	87	2	119	26	26	15	30	1.96
51855104--51855220	43	2.8	41	79	7	135	27	24	16	31	1.96
51858695--51858741	10	4.7	10	94	5	78	38	10	19	31	1.86
51858695--51858761	21	3.3	21	87	4	84	38	10	19	31	1.85
51858807--51858879	25	2.9	25	89	0	110	30	24	21	23	1.99
51858809--51858905	25	4.0	24	80	12	83	29	22	22	24	1.99
51858807--51858904	50	2.0	50	82	8	119	30	23	22	23	1.99
51865820--51866003	40	4.7	40	81	12	204	26	22	27	24	2.00
51865820--51866003	79	2.3	81	82	11	222	26	22	27	24	2.00
51865872--51866036	79	2.1	79	82	8	194	27	21	27	24	1.99
51873772--51873956	79	2.3	81	83	9	229	24	22	27	25	2.00
51873773--51873956	40	4.6	39	81	11	189	25	22	27	25	2.00
51873773--51873989	79	2.7	79	80	9	194	26	22	27	24	2.00
51885459--51885503	24	1.9	23	86	4	63	22	20	15	42	1.89
51894649--51894798	41	3.7	41	80	1	194	29	27	22	21	1.99
51904980--51905164	79	2.3	81	84	7	236	25	27	22	24	2.00
51904980--51905164	40	4.7	40	83	7	234	25	27	22	24	2.00
51918225--51918260	3	12.0	3	93	0	63	36	0	30	33	1.58
51936122--51936167	24	1.9	24	86	0	65	26	21	15	36	1.93
51936365--51936431	20	3.5	19	74	6	64	32	5	20	40	1.77
51949752--51949838	38	2.3	38	82	4	95	24	41	16	18	1.90
51953514--51953548	18	1.9	18	88	11	54	31	0	2	65	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51955787--51955851	14	4.6	14	82	0	58	21	13	6	58	1.57
51957895--51958160	46	5.8	45	76	15	265	21	18	29	30	1.97
51957941--51958106	47	3.6	47	79	14	225	22	18	29	29	1.97
51957889--51958153	93	2.8	93	97	0	494	21	19	29	29	1.97
51964812--51964855	22	2.0	22	81	0	52	56	2	0	40	1.11
51968269--51968451	50	3.7	50	79	11	180	28	28	18	25	1.98
51970850--51970879	16	1.9	15	93	6	51	46	16	10	26	1.78
51973276--51973472	35	5.6	35	85	1	243	32	25	10	30	1.90
51973277--51973472	105	1.9	105	85	2	277	32	26	10	30	1.90
51975234--51975264	15	2.1	15	100	0	62	54	6	0	38	1.26
51977169--51977206	14	2.9	13	81	11	51	57	10	13	18	1.63
51982426--51982601	46	3.8	46	77	12	189	18	19	31	30	1.96
51982422--51982594	93	1.9	93	92	0	292	19	20	31	28	1.97
51985521--51985561	15	2.7	15	92	0	64	14	21	14	48	1.80
51988084--51988251	46	3.6	46	77	7	178	20	19	30	29	1.97
51988080--51988252	93	1.9	93	90	2	276	20	19	31	28	1.97
51993756--51993864	55	2.0	55	96	0	200	25	27	22	24	2.00
51996392--51996583	40	4.8	40	89	1	271	22	21	30	25	1.99
52002201--52002265	31	2.1	30	83	11	78	55	1	1	41	1.18
52011101--52011146	19	2.5	19	92	3	76	39	6	13	41	1.70
52012118--52012156	20	2.0	20	85	10	53	58	5	12	23	1.54
52023062--52023200	43	3.3	43	74	9	124	26	25	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52028483--52029415	50	18.7	50	96	1	1674	30	29	16	24	1.96
52030062--52030121	30	2.0	30	83	6	77	28	26	6	38	1.81
52030254--52030341	44	2.0	44	95	0	158	27	21	14	36	1.93
52032860--52033018	39	4.1	38	88	4	219	26	29	21	22	1.99
52036319--52036357	15	2.5	15	91	4	60	56	15	12	15	1.68
52043650--52043876	49	4.6	49	81	4	258	29	25	18	25	1.98
52043650--52043876	100	2.3	98	83	5	269	29	25	18	25	1.98
52046499--52046561	33	1.9	33	83	0	81	23	28	22	25	1.99
52046523--52046584	28	2.3	27	75	5	70	29	27	24	19	1.98
52046703--52046757	23	2.4	23	96	0	92	40	21	20	18	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276