genome.fa.s12.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  136  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44108029--44108054	12	2.2	12	100	0	52	23	23	7	46	1.78
44110401--44110432	12	2.5	13	90	10	57	50	0	0	50	1.00
44110495--44110534	3	13.3	3	94	0	71	0	30	0	70	0.88
44110596--44110628	13	2.5	13	100	0	66	24	9	18	48	1.76
44112337--44112426	37	2.4	37	87	3	128	40	14	14	31	1.86
44128996--44129034	6	6.5	6	87	0	60	15	0	5	79	0.90
44130520--44130560	13	3.3	13	81	18	52	34	0	14	51	1.43
44130827--44130884	30	1.9	30	89	0	89	20	41	27	10	1.85
44141093--44141150	22	2.7	21	82	10	80	44	18	3	32	1.67
44151553--44151931	189	2.0	186	95	1	686	30	11	21	37	1.88
44165029--44165210	79	2.3	81	82	7	212	25	28	21	25	1.99
44165029--44165210	40	4.6	40	81	6	210	25	28	21	25	1.99
44166293--44166706	208	2.0	206	99	0	810	27	21	13	38	1.90
44167390--44167489	49	2.0	49	92	0	164	31	19	16	34	1.93
44173435--44173513	31	2.5	31	100	0	158	26	26	18	27	1.98
44173537--44173628	42	2.2	42	98	0	175	32	20	15	31	1.94
44173776--44173845	25	2.8	25	91	4	106	22	24	28	24	1.99
44177260--44177369	31	3.5	31	96	0	193	29	27	15	28	1.96
44177393--44177484	42	2.2	42	90	0	139	33	21	14	30	1.93
44177632--44177701	25	2.8	25	86	4	97	24	24	27	24	2.00
44178534--44178594	27	2.3	27	94	0	104	16	29	18	36	1.92
44178652--44178782	27	4.7	27	74	9	102	32	8	18	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44178633--44178808	54	3.2	53	75	10	149	32	9	17	40	1.82
44178710--44178808	27	3.7	27	81	5	94	28	7	21	43	1.78
44178840--44179255	27	15.4	27	89	1	582	40	7	22	29	1.82
44190895--44190932	19	2.0	20	89	5	60	42	26	10	21	1.85
44199683--44200005	48	6.9	48	81	6	315	25	30	20	23	1.99
44210811--44210870	26	2.3	26	75	8	61	51	25	11	11	1.72
44212690--44212816	50	2.6	50	86	5	161	27	27	16	28	1.97
44212727--44212870	50	2.9	51	82	10	165	24	27	17	30	1.97
44214909--44215093	40	4.7	40	81	5	178	27	28	20	24	1.99
44214876--44215093	40	5.5	39	77	7	165	25	27	20	25	1.99
44222425--44222596	40	4.3	40	88	2	222	25	27	21	25	1.99
44222427--44222649	40	5.6	39	83	5	216	25	27	21	25	1.99
44222425--44222649	80	2.8	79	80	7	240	25	27	21	25	1.99
44222581--44222658	40	1.9	41	82	10	97	26	28	20	24	1.99
44226242--44226325	40	2.1	39	84	2	105	29	29	15	25	1.96
44226538--44226576	11	3.5	11	80	13	53	30	10	0	58	1.31
44226537--44226581	22	2.0	22	100	0	90	33	8	0	57	1.30
44226535--44226597	22	2.6	24	82	17	85	30	12	0	57	1.36
44227832--44228098	48	5.7	46	77	8	218	26	29	17	25	1.98
44227925--44228041	47	2.5	47	89	5	168	28	29	15	26	1.96
44229186--44229292	54	2.0	54	98	0	205	26	19	13	41	1.88
44230845--44230906	30	2.1	29	96	3	115	27	4	30	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44247083--44247156	35	2.1	35	100	0	148	33	2	21	41	1.67
44250019--44250085	27	2.4	28	83	11	77	64	0	1	34	1.03
44250630--44250667	14	2.7	14	95	0	67	39	7	18	34	1.80
44251213--44251254	15	2.9	15	79	6	52	42	0	2	54	1.13
44251258--44251317	22	2.8	22	82	5	61	50	1	0	48	1.11
44251221--44251303	31	2.5	32	75	13	80	50	1	1	46	1.16
44253764--44253889	42	3.0	43	82	2	146	23	19	26	31	1.98
44253777--44253889	43	2.7	42	81	9	122	22	20	26	30	1.98
44258996--44259237	38	5.9	38	78	16	259	28	15	25	30	1.96
44258933--44259230	85	3.5	85	95	0	533	29	14	24	31	1.95
44265910--44266029	43	2.8	42	74	2	123	23	16	26	33	1.96
44272463--44272535	38	1.9	38	97	0	137	30	9	32	27	1.89
44274300--44274351	27	2.0	26	84	3	68	17	26	21	34	1.95
44288920--44289236	27	11.7	27	88	1	375	32	23	6	38	1.80
44289188--44289300	27	4.2	27	77	2	84	39	23	5	30	1.77
44288906--44289265	81	4.4	81	80	3	348	33	22	6	37	1.81
44288906--44289354	81	5.5	81	79	2	321	35	22	6	35	1.81
44289281--44289397	27	4.3	27	91	0	180	39	19	10	30	1.85
44289229--44289397	81	2.1	81	83	4	207	40	20	8	30	1.82
44289281--44289436	27	5.8	27	83	4	165	37	20	10	30	1.87
44289281--44289436	81	1.9	80	81	8	183	37	20	10	30	1.87
44289419--44289559	54	2.6	54	87	0	201	37	16	19	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44289427--44289586	81	2.0	81	86	0	221	35	16	21	27	1.94
44289425--44289562	27	5.1	27	80	3	170	36	17	21	25	1.94
44289790--44289859	25	2.8	25	88	0	113	27	25	22	24	2.00
44296388--44296937	280	2.0	280	100	0	1100	29	26	15	29	1.96
44308674--44308726	29	1.9	26	88	11	79	35	7	7	49	1.60
44309585--44309613	8	3.6	8	100	0	58	34	0	0	65	0.93
44310188--44310276	38	2.4	38	83	5	101	43	4	5	46	1.47
44313814--44314112	145	2.0	147	90	2	469	33	12	21	32	1.91
44318445--44318669	40	5.6	40	83	2	281	23	26	24	25	2.00
44318409--44318669	80	3.3	80	83	3	303	23	26	24	26	2.00
44332997--44333104	38	2.8	38	87	0	153	10	23	30	36	1.88
44333564--44333604	21	2.0	21	85	9	57	31	4	19	43	1.72
44340634--44340672	20	2.0	20	89	0	60	28	0	0	71	0.86
44348189--44348237	25	2.0	25	83	0	62	40	16	8	34	1.78
44358994--44359027	18	1.9	17	94	5	59	64	0	8	26	1.22
44359326--44359372	19	2.5	19	89	0	67	40	2	17	40	1.61
44360934--44360977	23	2.0	22	81	4	52	43	0	20	36	1.52
44375528--44375737	28	7.5	28	93	0	341	25	13	28	31	1.94
44375500--44375737	56	4.2	56	94	2	381	25	13	28	31	1.94
44375500--44375737	84	2.8	83	89	1	341	25	13	28	31	1.94
44383077--44383119	18	2.4	18	77	14	52	46	6	9	37	1.63
44383566--44383799	28	8.4	28	93	1	346	25	12	28	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44389261--44389530	88	3.1	87	63	16	194	34	18	21	26	1.96
44389225--44389957	176	4.1	177	83	4	861	31	17	22	27	1.97
44393946--44393984	12	3.2	12	81	0	51	64	10	5	20	1.44
44395429--44395474	3	15.7	3	82	13	51	30	2	4	63	1.26
44397131--44397191	18	3.4	18	73	8	70	50	9	9	29	1.67
44397131--44397203	36	2.0	36	100	0	146	53	8	10	27	1.64
44397405--44397466	27	2.3	27	86	5	81	61	6	3	29	1.37
44397395--44397466	27	2.7	26	81	10	74	58	6	4	30	1.43
44397632--44397661	15	2.0	15	93	0	51	63	0	3	33	1.11
44398124--44398268	3	48.3	3	67	13	57	57	3	9	28	1.47
44420727--44420771	22	2.0	22	91	0	72	48	15	2	33	1.57
44422499--44422535	9	4.1	9	92	0	65	45	13	10	29	1.77
44426943--44427002	31	1.9	31	93	0	102	25	33	15	26	1.95
44427635--44427694	31	1.9	31	100	0	120	23	30	16	30	1.96
44432727--44432776	20	2.5	20	73	0	55	30	18	24	28	1.97
44432709--44432813	40	2.6	40	81	0	120	33	20	24	21	1.97
44432811--44432853	19	2.2	19	83	4	50	37	11	20	30	1.89
44446498--44446574	38	2.0	38	97	0	145	40	20	10	28	1.86
44468190--44468608	49	8.8	47	74	9	325	25	28	19	26	1.99
44468188--44468508	96	3.3	96	97	0	597	25	28	20	25	1.99
44468381--44468655	146	1.9	140	81	7	329	24	30	18	26	1.98
44468188--44468694	49	10.7	49	74	10	291	25	28	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44469881--44470001	44	2.8	44	84	3	138	33	28	19	19	1.96
44470683--44470731	23	2.1	23	100	0	98	42	14	16	26	1.86
44486485--44486613	18	7.4	17	66	20	61	52	3	27	16	1.58
44488321--44488367	20	2.3	20	85	0	67	29	36	12	21	1.91
44490695--44490773	29	2.7	29	84	5	97	27	31	15	25	1.95
44494571--44494678	45	2.4	45	89	4	157	24	21	28	25	1.99
44497607--44498758	48	24.0	48	97	0	2124	40	6	22	30	1.79
44507102--44507301	44	4.5	44	86	4	278	25	21	28	25	1.99
44507097--44507264	89	1.9	89	94	0	300	24	20	27	27	1.99
44514043--44514076	17	2.0	17	88	0	50	73	5	14	5	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276