genome.fa.s12.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  132  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42734623--42734669	24	2.0	24	95	0	85	25	17	10	46	1.79
42734719--42734802	27	3.1	27	85	0	105	28	22	7	41	1.80
42734801--42735034	27	8.6	26	81	5	234	39	21	9	29	1.85
42734767--42735034	109	2.5	109	81	7	314	38	22	8	29	1.85
42734765--42735034	27	10.0	26	78	9	215	38	22	8	30	1.85
42734842--42735094	54	4.7	55	77	10	182	39	21	9	29	1.86
42735059--42735220	27	6.0	27	88	0	207	35	19	20	24	1.96
42735050--42735219	81	2.1	81	86	0	241	36	18	20	25	1.94
42737004--42737095	27	3.4	27	84	0	121	29	25	7	38	1.83
42737094--42737304	27	7.8	27	74	12	105	39	20	10	28	1.86
42737127--42737326	27	7.4	27	76	6	156	41	20	9	29	1.83
42737127--42737335	81	2.6	80	80	8	235	40	20	9	29	1.84
42737378--42737458	27	3.0	27	87	0	117	33	19	22	24	1.97
42739894--42739985	27	3.4	27	84	0	112	28	22	7	41	1.81
42740016--42740215	27	7.4	27	78	9	212	40	23	8	28	1.82
42740016--42740215	81	2.5	80	83	9	253	40	23	8	28	1.82
42740016--42740215	54	3.7	54	82	7	237	40	23	8	28	1.82
42740016--42740276	27	9.6	28	74	12	127	38	22	8	30	1.85
42740267--42740347	27	3.0	27	85	0	99	34	19	20	24	1.96
42740550--42740623	25	3.0	24	82	7	78	25	21	22	29	1.99
42743030--42743113	27	3.1	27	89	0	105	29	21	7	41	1.79
42743076--42743343	27	10.0	27	77	6	208	38	21	9	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42743386--42743555	27	6.3	27	85	3	191	38	18	18	25	1.93
42743386--42743537	81	1.9	80	88	1	232	38	19	17	24	1.92
42743386--42743554	81	2.1	80	86	1	230	38	17	18	25	1.92
42751849--42752006	39	4.1	38	84	4	190	21	21	29	27	1.99
42751849--42752006	78	2.0	78	86	2	219	21	21	29	27	1.99
42764375--42764458	42	2.0	43	84	11	111	26	15	29	28	1.96
42766931--42767115	79	2.3	82	84	7	238	25	27	22	24	2.00
42766912--42767115	40	5.1	40	82	8	238	25	27	22	25	2.00
42774995--42775179	79	2.3	81	84	7	236	25	27	22	24	2.00
42774995--42775179	40	4.7	40	83	7	234	25	27	22	24	2.00
42793282--42793394	27	4.2	27	81	0	145	36	16	18	28	1.93
42793282--42793394	54	2.1	54	88	3	165	36	16	18	28	1.93
42793290--42793421	27	4.9	28	76	5	112	36	16	19	27	1.93
42793282--42793419	54	2.6	53	83	5	154	36	15	19	28	1.93
42793938--42793990	22	2.4	22	75	12	63	22	22	20	33	1.97
42794254--42794372	6	19.3	6	68	17	66	18	19	14	47	1.82
42794254--42794346	25	3.7	25	88	0	132	18	20	15	46	1.84
42794800--42794958	79	2.0	79	100	0	318	28	16	17	37	1.92
42798631--42798691	30	2.0	30	83	0	77	31	22	8	37	1.84
42805843--42805892	25	2.0	25	88	0	73	34	24	16	26	1.95
42805929--42805995	20	3.3	20	89	0	107	34	13	20	31	1.92
42806045--42806195	51	3.1	47	88	7	212	29	21	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42806045--42806195	25	6.2	24	87	6	207	29	21	21	27	1.98
42813845--42813892	25	1.9	25	86	0	69	33	25	16	25	1.96
42813936--42813986	20	2.5	20	90	0	75	35	7	17	39	1.79
42813940--42813978	15	2.5	16	84	16	55	35	10	20	33	1.86
42814031--42814175	24	5.9	24	87	7	195	29	19	22	28	1.98
42814031--42814175	49	3.0	48	89	7	204	29	19	22	28	1.98
42815649--42815815	24	7.0	24	87	6	234	25	21	24	28	1.99
42815649--42815815	71	2.3	72	89	5	250	25	21	24	28	1.99
42815649--42815815	47	3.5	48	88	6	234	25	21	24	28	1.99
42817131--42817214	27	3.1	27	93	3	134	20	26	22	30	1.98
42817363--42817558	81	2.4	80	87	3	268	30	8	21	39	1.83
42817253--42817544	27	10.8	27	79	5	223	31	9	19	39	1.84
42817536--42817692	27	5.9	27	85	0	163	38	8	22	29	1.85
42817366--42817585	81	2.7	81	83	4	205	32	8	20	38	1.82
42819792--42819842	26	2.0	26	84	0	66	39	7	11	41	1.71
42833387--42833825	27	16.2	27	79	5	334	39	20	8	31	1.82
42833821--42833960	27	5.2	27	89	0	190	34	15	21	29	1.94
42835549--42835736	50	3.8	50	81	4	220	37	20	11	30	1.88
42835557--42835736	99	1.8	99	84	7	249	37	20	11	31	1.87
42842211--42842271	30	2.0	30	83	0	77	31	22	8	37	1.84
42848168--42848214	24	2.0	24	100	0	94	25	34	27	12	1.92
42849584--42849799	50	4.3	50	83	4	265	38	19	12	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42850547--42850866	160	2.0	160	100	0	640	39	17	5	38	1.72
42859062--42859253	40	4.8	40	92	1	226	27	27	21	23	1.99
42859033--42859252	80	2.8	80	81	4	248	28	27	20	23	1.99
42871176--42871569	50	7.9	50	74	6	357	31	24	17	26	1.97
42871187--42871569	101	3.8	100	77	8	318	31	24	16	26	1.96
42871179--42871570	150	2.6	150	90	2	599	31	24	17	26	1.97
42871924--42871960	19	1.9	19	88	0	56	48	16	5	29	1.68
42888404--42888485	27	3.1	26	84	5	101	18	21	24	35	1.96
42902338--42902593	40	6.4	40	95	2	412	26	28	22	23	1.99
42910425--42910720	40	7.4	40	95	1	483	26	28	22	23	1.99
42913291--42913411	60	2.0	60	96	0	224	42	19	9	28	1.82
42917341--42917435	20	4.8	20	87	5	124	36	9	20	33	1.85
42917360--42917418	11	5.7	11	69	15	54	38	10	18	32	1.84
42917349--42917435	40	2.2	40	91	4	140	36	10	20	32	1.87
42917484--42917556	26	2.9	25	89	4	110	27	26	21	24	2.00
42925753--42925921	48	3.6	48	82	3	225	29	19	27	23	1.98
42925753--42926019	94	2.9	93	84	6	301	26	19	28	25	1.99
42925804--42926073	49	5.7	48	76	11	184	26	18	29	25	1.98
42925803--42926068	141	1.9	139	85	7	369	26	18	28	25	1.98
42930849--42931032	40	4.6	40	82	2	226	25	24	26	23	2.00
42932692--42932745	21	2.6	21	94	2	92	31	33	18	16	1.93
42936679--42937667	496	2.0	496	99	0	1960	24	32	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42943089--42943212	29	4.3	29	85	1	151	31	31	12	24	1.93
42946137--42946172	17	2.1	18	89	5	56	19	27	38	13	1.90
42947462--42947518	25	2.3	25	78	0	69	38	8	17	35	1.81
42947462--42947531	25	2.8	25	74	8	61	35	10	17	37	1.83
42951967--42952018	27	1.9	27	92	7	88	28	15	21	34	1.94
42958429--42958465	9	4.3	9	80	13	51	56	21	13	8	1.63
42958438--42958472	16	2.2	16	94	0	61	54	20	17	8	1.68
42958665--42958779	29	4.0	29	83	6	137	26	15	28	28	1.96
42963262--42963433	45	3.9	45	87	5	219	26	29	19	23	1.98
42964337--42964431	47	2.0	46	91	2	154	43	13	13	29	1.83
42966071--42966133	32	2.0	32	90	0	99	30	28	19	22	1.98
42966437--42966503	27	2.5	27	82	0	80	28	14	16	40	1.88
42982849--42983116	48	5.6	49	74	11	234	26	19	29	23	1.98
42982853--42983118	96	2.8	96	86	3	356	26	19	29	24	1.99
42987114--42987291	27	6.6	27	84	3	205	29	28	15	26	1.96
42987135--42987290	82	1.9	81	88	3	233	29	28	15	26	1.96
43003988--43004039	26	2.0	26	96	0	95	26	3	13	55	1.55
43022838--43022867	16	1.9	15	93	6	51	33	23	0	43	1.54
43023079--43023359	50	5.6	50	77	5	255	31	25	17	25	1.97
43025638--43025676	13	2.8	13	84	7	51	56	2	2	38	1.27
43035723--43035787	33	2.0	33	96	0	121	32	9	26	32	1.88
43036921--43036972	27	2.0	26	84	3	68	17	26	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43037725--43038019	42	6.8	41	74	13	168	29	16	24	29	1.96
43037749--43037888	48	2.9	48	87	2	201	30	16	22	30	1.96
43041627--43041703	28	2.8	28	75	0	73	31	10	25	32	1.90
43053456--43053612	38	3.9	38	73	14	143	29	15	25	29	1.96
43053878--43053919	21	2.0	21	100	0	84	38	0	19	42	1.51
43070236--43070280	22	2.0	22	91	0	72	15	4	13	66	1.39
43070246--43070348	36	3.0	33	78	9	98	24	3	7	64	1.38
43087266--43087378	60	1.9	60	96	0	208	41	19	11	27	1.86
43101383--43101424	17	2.5	17	92	0	66	21	30	33	14	1.93
43101757--43101851	20	4.8	20	84	5	115	37	9	18	33	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276