Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  195  of  276  ( 33102 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64569573--64569597
10
2.5
10
100
0
50
12
24
32
32
1.91
64570794--64570836
21
2.0
21
100
0
86
34
27
9
27
1.88
64573472--64573594
47
2.6
47
98
0
237
30
27
18
23
1.98
64573418--64573640
47
4.8
48
83
9
200
29
28
19
22
1.98
64581096--64581552
47
9.7
47
100
0
914
27
27
19
25
1.99
64583673--64583698
13
2.0
13
100
0
52
30
7
15
46
1.74
64589341--64589385
18
2.5
20
82
17
62
37
17
4
40
1.70
64589898--64589935
19
2.0
19
100
0
76
26
5
5
63
1.37
64593366--64593405
21
1.9
21
85
10
55
32
22
20
25
1.98
64596981--64597048
34
2.0
34
97
0
127
35
26
22
16
1.94
64598050--64598291
14
16.9
15
88
8
108
27
1
0
71
0.97
64598097--64598298
7
28.9
7
98
0
386
27
0
0
72
0.84
64607129--64607177
21
2.3
21
83
13
57
69
4
0
26
1.06
64608066--64608092
3
9.0
3
100
0
54
66
0
0
33
0.92
64609440--64609508
33
2.2
31
84
5
84
20
15
4
59
1.53
64616296--64616354
30
2.0
30
89
0
91
32
13
25
28
1.94
64616689--64616864
46
3.8
45
76
12
169
27
21
28
22
1.99
64623704--64623921
40
5.5
40
88
3
282
24
27
24
23
2.00
64625811--64625937
63
2.0
63
93
0
218
41
11
22
23
1.87
64627198--64627256
30
2.0
30
93
0
100
32
15
25
27
1.95
64627596--64627809
46
4.6
45
77
10
175
26
19
29
24
1.98
64636634--64636803
40
4.3
40
90
3
236
25
28
21
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64636634--64636856
40
5.6
39
85
5
234
26
27
21
25
1.99
64636634--64636856
120
1.9
119
81
6
272
26
27
21
25
1.99
64636788--64636865
40
1.9
41
82
10
97
26
28
21
23
1.99
64641575--64641759
79
2.3
82
83
7
229
24
27
22
24
2.00
64641556--64641759
40
5.1
40
81
8
229
24
27
22
25
2.00
64644833--64644893
30
2.0
30
87
0
86
29
22
6
40
1.79
64648611--64648765
42
3.7
41
81
3
184
30
14
25
29
1.95
64650840--64651138
29
10.3
29
75
3
197
36
19
17
26
1.93
64650846--64651132
146
2.0
146
79
4
319
37
18
17
26
1.93
64650855--64651174
29
11.0
29
74
6
155
37
17
17
27
1.93
64661326--64661360
17
2.1
17
94
5
63
25
0
14
60
1.35
64661755--64661792
19
2.0
19
100
0
76
21
5
26
47
1.71
64664155--64664371
39
5.6
39
87
1
294
28
26
23
22
1.99
64665811--64665836
6
4.3
6
100
0
52
84
0
0
15
0.62
64667183--64667235
23
2.4
22
76
20
56
9
18
1
69
1.25
64670979--64671031
23
2.4
22
76
20
56
9
18
1
69
1.25
64687963--64688050
39
2.3
39
90
4
133
32
23
18
25
1.97
64688028--64688072
22
2.0
22
91
0
72
37
22
13
26
1.91
64691516--64691592
26
3.0
26
76
0
91
28
20
18
32
1.96
64691584--64691832
29
8.6
29
83
4
225
24
16
21
37
1.93
64691588--64691832
87
2.8
87
83
1
267
24
16
21
37
1.93
64692002--64692047
22
2.1
21
84
15
58
63
2
15
19
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64692448--64692580
50
2.6
51
76
9
144
34
15
12
37
1.85
64699464--64699657
38
5.1
38
90
1
300
23
21
23
30
1.99
64699464--64699657
75
2.6
76
89
1
291
23
21
23
30
1.99
64699633--64699808
43
4.1
43
89
1
257
13
22
32
31
1.93
64701154--64701207
21
2.7
20
86
13
83
68
0
22
9
1.17
64701184--64701222
15
2.6
15
84
8
53
71
0
20
7
1.10
64704319--64704373
27
2.0
27
100
0
110
25
38
7
29
1.83
64709413--64709471
10
5.7
10
78
7
55
47
15
23
13
1.81
64709416--64709471
21
2.7
21
88
0
85
46
16
23
14
1.83
64714087--64714353
46
5.8
46
97
0
489
20
20
28
30
1.98
64721758--64721933
46
3.8
46
77
16
193
21
20
28
29
1.98
64721755--64721924
93
1.8
93
93
2
297
21
20
29
28
1.98
64732656--64732780
62
2.0
61
95
1
223
16
21
35
25
1.94
64733083--64733239
27
5.8
27
86
0
215
29
22
8
40
1.83
64733072--64733268
54
3.6
54
82
0
205
32
21
8
37
1.83
64733070--64733267
81
2.4
81
85
0
279
32
21
8
37
1.83
64733218--64733441
54
4.1
54
77
6
195
40
20
7
31
1.81
64733070--64733374
81
3.8
81
76
4
211
35
21
7
35
1.82
64733070--64733470
27
14.8
27
78
5
171
35
20
8
34
1.84
64733500--64733561
27
2.3
27
80
5
72
38
17
22
20
1.93
64734371--64734440
25
2.8
25
91
0
104
27
24
22
25
2.00
64734371--64734453
25
3.4
25
82
11
84
30
21
22
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64734660--64734774
31
3.7
31
94
1
187
27
16
26
28
1.97
64735716--64735779
24
2.7
24
82
4
76
31
29
17
21
1.96
64736511--64736600
29
3.1
27
82
7
99
30
31
11
27
1.91
64736526--64736600
29
2.6
29
89
2
107
29
30
12
28
1.92
64739552--64739647
27
3.6
27
84
0
120
41
19
8
30
1.81
64739603--64739666
27
2.4
28
82
12
80
43
15
9
31
1.78
64739661--64739870
27
7.8
27
88
3
262
29
22
7
40
1.81
64739618--64739880
107
2.5
108
81
5
266
31
21
7
38
1.82
64739659--64739870
81
2.6
81
87
2
302
30
22
7
40
1.81
64739869--64740138
27
9.9
27
76
2
182
39
18
10
31
1.84
64741040--64741109
25
2.8
25
88
0
104
28
25
21
24
1.99
64741329--64741400
31
2.3
31
97
0
135
27
16
27
27
1.97
64744083--64744239
43
3.7
43
75
7
158
29
26
19
24
1.99
64747337--64747471
28
4.8
28
88
0
207
34
11
25
29
1.90
64764966--64765121
43
3.7
41
76
10
136
31
25
18
24
1.98
64764966--64765121
85
1.8
85
86
8
228
31
25
18
24
1.98
64765020--64765141
43
2.8
42
74
18
108
33
24
16
25
1.96
64766335--64766386
22
2.4
21
83
6
59
44
26
1
26
1.65
64767016--64767171
42
3.7
41
77
8
145
30
26
17
25
1.97
64773504--64773687
40
4.6
40
82
9
207
23
22
28
25
1.99
64773557--64773720
79
2.1
79
84
6
208
25
20
28
25
1.99
64775243--64775340
33
3.0
32
76
11
81
26
26
16
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64775274--64775482
101
2.1
101
87
1
294
28
24
17
29
1.97
64793611--64793701
27
3.4
27
82
0
74
37
20
5
36
1.76
64793624--64794110
54
9.0
54
85
0
650
32
21
4
41
1.73
64793624--64794110
27
18.0
27
85
0
578
32
21
4
41
1.73
64793624--64794110
108
4.5
108
94
0
785
32
21
4
41
1.73
64794440--64794499
27
2.3
27
85
2
77
21
23
20
35
1.96
64794618--64794697
31
2.6
31
81
0
97
21
16
12
50
1.78
64794618--64794723
6
17.3
6
68
14
56
20
16
12
50
1.76
64799266--64799366
52
2.0
51
96
2
184
34
18
21
24
1.96
64800540--64800610
34
2.1
33
82
12
83
25
21
26
26
1.99
64812550--64812615
33
2.0
33
100
0
132
27
27
21
24
1.99
64812741--64812825
42
2.0
42
95
4
154
27
29
18
24
1.98
64813912--64813985
29
2.6
29
86
4
96
25
31
16
27
1.96
64816962--64817033
26
2.8
26
83
10
87
23
22
20
33
1.97
64817253--64817336
31
2.7
31
90
1
134
33
15
26
25
1.95
64824903--64824974
26
2.8
26
85
6
94
26
20
22
30
1.98
64824927--64824987
25
2.4
26
76
15
65
31
16
22
29
1.96
64825192--64825275
31
2.7
31
88
1
134
32
15
26
26
1.96
64834634--64834719
44
1.9
45
92
2
147
26
15
24
33
1.95
64845267--64845625
94
3.8
94
75
13
294
27
20
28
23
1.99
64845272--64845630
47
7.7
46
69
11
194
27
19
29
23
1.98
64852411--64852472
30
2.1
29
90
3
97
33
16
24
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64852817--64853173
47
7.6
46
69
12
208
28
20
28
22
1.99
64852814--64853177
94
3.9
94
76
8
316
28
20
28
22
1.99
64854846--64854905
27
2.3
26
85
2
75
35
20
23
21
1.96
64854873--64855014
67
2.1
67
82
5
167
33
22
26
17
1.96
64867740--64868003
98
2.7
98
95
2
460
32
20
25
22
1.98
64881962--64882242
137
2.0
138
92
0
465
44
6
9
40
1.61
64885502--64885592
25
3.6
25
74
0
92
29
21
21
26
1.99
64888077--64888155
29
2.7
29
86
0
104
21
16
25
36
1.94
64893512--64893572
20
3.1
19
77
15
61
11
26
21
40
1.87
64901958--64902088
46
2.8
47
79
14
155
21
19
29
29
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276