genome.fa.s12.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  188  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61919856--61919913	29	2.0	28	93	3	98	34	0	3	62	1.12
61921596--61921712	47	2.5	47	88	2	164	17	18	21	42	1.89
61921840--61921925	18	4.7	18	82	1	100	36	9	13	40	1.77
61921837--61921925	36	2.4	37	83	1	117	35	10	14	39	1.80
61925273--61925450	27	6.6	27	83	3	205	26	15	28	29	1.96
61925274--61925429	82	1.9	81	88	3	233	26	15	28	29	1.96
61925270--61925450	82	2.2	81	83	2	229	27	15	27	29	1.96
61951701--61951879	39	4.5	39	88	2	259	29	18	24	28	1.98
61951701--61951879	79	2.3	78	89	3	270	29	18	24	28	1.98
61957012--61957069	30	2.0	29	89	3	89	29	24	18	27	1.98
61962888--61962974	43	2.0	43	95	0	156	34	11	5	48	1.63
61962907--61962978	22	3.3	22	64	24	62	33	15	6	44	1.73
61966975--61967011	19	2.0	19	85	15	51	27	8	18	45	1.77
61966886--61967125	120	2.0	120	97	0	453	32	13	21	32	1.92
61975198--61975228	16	1.9	16	93	0	53	16	9	29	45	1.79
61980831--61980945	29	4.0	29	78	6	110	30	31	13	25	1.93
61985028--61985115	34	2.6	34	90	0	131	25	20	21	32	1.97
61985029--61985128	34	2.9	34	86	5	114	26	21	24	29	1.99
61988579--61989079	247	2.0	248	86	1	691	28	21	24	24	1.99
61991940--61992043	45	2.4	43	80	9	122	36	12	27	23	1.91
61997218--61997592	48	7.8	48	87	2	513	28	29	16	25	1.96
61997218--61997592	95	3.9	96	86	2	513	28	29	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61999632--61999925	51	5.9	49	80	7	315	27	27	19	25	1.99
61999631--61999925	100	3.0	99	87	3	398	27	27	19	25	1.99
62002058--62002122	15	4.4	15	78	16	73	63	13	13	9	1.53
62002058--62002126	30	2.3	31	83	14	92	60	17	13	8	1.56
62019433--62019503	3	24.0	3	72	13	58	61	2	4	30	1.29
62025957--62026077	64	1.9	64	86	3	172	33	12	13	41	1.81
62032102--62032165	28	2.3	28	86	5	85	32	17	17	32	1.93
62032114--62032178	28	2.3	28	89	0	94	30	23	13	32	1.93
62032244--62032429	93	2.0	92	98	1	363	22	15	27	33	1.94
62032394--62032488	27	3.5	26	77	13	102	17	22	20	40	1.92
62033819--62033928	29	3.8	29	81	3	116	26	14	31	27	1.95
62039869--62039904	12	3.0	12	91	0	54	25	0	38	36	1.56
62039874--62039909	12	3.0	12	91	0	54	25	0	44	30	1.54
62047245--62047722	239	2.0	239	100	0	956	21	21	10	46	1.81
62049890--62050045	35	4.5	34	76	6	152	30	8	16	44	1.77
62049887--62050045	70	2.3	70	80	0	192	30	8	16	44	1.77
62052917--62052986	27	2.6	26	95	2	95	31	28	12	27	1.93
62052917--62053014	28	3.5	28	90	2	135	31	28	13	26	1.94
62053461--62053487	12	2.2	12	100	0	54	40	0	7	51	1.30
62054815--62054839	13	1.9	13	100	0	50	32	20	16	32	1.94
62055387--62055565	27	6.6	27	80	5	173	26	15	29	29	1.96
62055387--62055564	54	3.3	55	81	5	200	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62055388--62055543	82	1.9	81	88	3	233	26	15	28	29	1.96
62055384--62055565	82	2.2	81	82	3	231	26	15	28	29	1.96
62058572--62058746	46	3.8	46	75	13	169	29	27	20	23	1.99
62058580--62058751	93	1.8	93	88	2	265	28	27	20	23	1.99
62074095--62074488	50	7.8	50	80	1	383	26	15	26	31	1.96
62079398--62079476	37	2.1	37	88	4	115	25	30	18	25	1.98
62084857--62085091	101	2.3	102	86	0	319	25	17	25	31	1.97
62084850--62085091	50	4.8	50	79	4	227	25	18	25	30	1.98
62086430--62086471	19	2.2	19	95	0	75	52	7	16	23	1.68
62096002--62096228	40	5.7	40	89	5	336	25	27	22	24	2.00
62096003--62096221	120	1.8	120	93	2	377	26	26	23	24	2.00
62112731--62112790	30	2.0	30	86	0	84	28	23	8	40	1.83
62113660--62113912	40	6.4	37	82	7	218	26	26	20	26	1.99
62113686--62113919	40	5.8	40	86	5	323	26	27	20	25	1.99
62113686--62113912	120	1.9	120	90	3	368	26	26	21	25	1.99
62117177--62117320	44	3.3	43	77	10	134	34	25	15	25	1.95
62125286--62125343	29	2.0	30	86	3	82	43	0	36	20	1.52
62125385--62125430	9	5.1	9	89	0	65	30	10	10	47	1.73
62130781--62131388	240	2.5	240	97	0	1119	31	19	18	30	1.96
62138680--62138778	43	2.3	43	91	3	155	20	36	23	20	1.95
62140770--62140806	13	2.8	13	95	4	65	16	8	16	59	1.59
62140766--62140801	13	2.4	16	73	26	51	19	5	19	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62143208--62143274	25	2.7	24	81	4	89	16	19	7	56	1.63
62144844--62144912	13	5.3	13	79	10	70	39	14	0	46	1.45
62144830--62144938	53	2.1	53	81	10	125	34	15	0	48	1.52
62144856--62144938	13	6.3	13	73	2	67	33	16	1	48	1.55
62144998--62145057	25	2.4	25	88	0	84	33	21	20	25	1.97
62145677--62145709	14	2.4	14	94	0	57	27	24	21	27	1.99
62147226--62147284	30	2.0	30	100	0	118	38	13	20	27	1.90
62147333--62147668	168	2.0	168	98	0	654	43	20	8	27	1.81
62149269--62150130	39	22.1	39	99	0	1688	20	30	25	22	1.98
62155581--62155888	39	7.9	39	92	0	526	20	24	30	24	1.99
62155582--62155888	78	3.9	78	98	0	587	20	24	30	24	1.99
62165476--62165519	23	1.9	23	100	0	88	22	13	22	40	1.89
62167561--62167627	35	1.9	35	90	0	107	35	13	17	32	1.89
62168720--62168773	22	2.5	22	93	0	90	42	24	18	14	1.88
62169182--62169345	41	4.0	41	89	0	247	26	29	21	21	1.99
62169605--62169710	27	4.0	27	79	11	112	33	12	13	40	1.81
62169610--62169764	54	2.9	54	81	4	161	30	9	17	43	1.80
62169610--62169764	27	5.8	26	77	7	109	30	9	17	43	1.80
62171588--62171759	79	2.2	79	84	3	220	25	21	27	25	1.99
62171535--62171757	40	5.6	39	81	8	209	25	21	27	25	1.99
62171615--62171792	79	2.2	80	80	3	191	25	21	28	24	1.99
62177230--62177401	79	2.2	79	84	3	220	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62177177--62177399	40	5.6	39	82	8	209	25	22	27	25	2.00
62177257--62177434	79	2.2	80	80	3	191	25	21	28	24	1.99
62179074--62179167	27	3.5	26	79	5	98	29	7	23	39	1.82
62179166--62179240	27	2.8	27	85	4	98	28	20	17	34	1.95
62180921--62180985	32	2.0	32	96	0	121	26	29	24	20	1.99
62185530--62185568	20	2.0	20	84	0	51	69	2	2	25	1.14
62187151--62187309	43	3.7	42	78	5	124	24	17	24	33	1.96
62187151--62187267	44	2.7	44	77	7	116	23	17	25	33	1.96
62187500--62187547	20	2.3	21	86	10	64	41	0	22	35	1.54
62208104--62208216	42	2.7	43	79	8	133	23	17	24	33	1.96
62208104--62208225	43	2.9	43	77	9	117	22	17	25	34	1.96
62211331--62211382	26	2.0	26	85	7	70	36	3	15	44	1.65
62211517--62211614	44	2.2	44	94	0	178	29	16	23	30	1.96
62214495--62214715	60	3.7	60	78	6	169	38	13	23	24	1.91
62214552--62214780	30	7.6	30	78	3	219	37	12	22	27	1.90
62214552--62214758	90	2.3	90	83	0	261	36	12	23	27	1.91
62226270--62226379	55	2.0	55	96	0	202	31	32	16	19	1.94
62230076--62230128	25	2.1	25	92	0	88	32	18	24	24	1.97
62230084--62230135	25	2.1	25	88	0	77	34	21	21	23	1.97
62232665--62233287	47	13.3	47	95	0	1047	27	29	9	33	1.89
62242994--62243131	49	2.8	49	78	10	156	23	26	21	28	1.99
62243053--62243310	46	5.6	45	71	15	143	22	29	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62247742--62247824	6	13.8	6	90	0	130	53	13	15	18	1.74
62248097--62248148	27	2.0	26	84	3	68	34	21	26	17	1.95
62248385--62248659	27	10.2	27	87	0	343	40	7	22	30	1.81
62248385--62248659	108	2.6	106	89	1	406	40	7	22	30	1.81
62248636--62248860	27	8.3	27	83	2	211	30	9	20	38	1.85
62252136--62253417	47	27.1	47	97	0	2393	31	8	29	29	1.87
62257213--62257311	50	2.0	49	93	0	162	38	5	37	18	1.73
62266587--62266619	17	1.9	17	93	0	57	27	0	18	54	1.44
62271156--62271278	29	4.3	29	83	2	142	22	13	33	30	1.92
62281335--62281466	44	3.0	44	80	7	133	28	18	18	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276