genome.fa.s12.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  127  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40983388--40983503	45	2.6	44	79	5	126	32	12	21	32	1.91
40983603--40983875	44	6.2	44	75	5	217	33	16	20	30	1.94
40983633--40983890	44	5.8	44	77	4	225	32	16	20	30	1.94
40983633--40983890	89	2.9	89	85	0	354	32	16	20	30	1.94
40986146--40986187	17	2.5	17	92	0	66	40	2	7	50	1.43
41003191--41003242	11	4.6	11	74	11	52	63	1	1	32	1.16
41003192--41003242	22	2.3	23	82	3	59	64	1	1	31	1.15
41005138--41005191	9	5.7	9	79	12	63	64	1	1	31	1.14
41005138--41005191	20	2.8	19	83	8	65	64	1	1	31	1.14
41005813--41005859	18	2.6	18	82	0	58	40	6	0	53	1.27
41011818--41011843	12	2.2	12	100	0	52	0	7	0	92	0.39
41011955--41012001	22	2.1	23	84	11	62	40	6	0	53	1.27
41012322--41012370	22	2.2	22	96	0	89	28	10	24	36	1.88
41013916--41014192	49	5.8	47	77	7	204	27	17	28	26	1.97
41013965--41014186	49	4.6	49	81	5	211	27	18	28	25	1.98
41013954--41014138	98	1.9	98	87	5	277	28	18	29	23	1.98
41034044--41034112	32	2.2	32	89	5	104	18	28	37	14	1.91
41039807--41039875	28	2.5	28	85	0	84	31	14	17	36	1.90
41039834--41039881	14	3.4	14	76	0	51	35	14	14	35	1.87
41044264--41044319	18	2.9	19	73	26	55	48	0	0	51	1.00
41047819--41047952	52	2.6	52	88	6	211	27	29	14	27	1.96
41049179--41049217	18	2.3	18	86	8	55	35	25	0	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41049240--41049292	13	4.1	13	80	7	63	50	3	0	45	1.19
41049242--41049282	9	4.7	9	84	3	57	51	2	0	46	1.14
41064439--41064497	30	2.0	30	86	0	82	25	23	8	42	1.82
41066186--41066236	10	5.0	10	85	4	66	41	19	25	13	1.88
41066187--41066239	21	2.6	21	88	5	74	43	20	22	13	1.86
41066186--41066248	20	3.1	21	84	4	76	39	19	26	14	1.90
41073716--41073857	47	3.0	47	90	0	212	34	7	28	28	1.85
41074277--41074533	40	6.5	40	88	2	342	25	28	23	23	2.00
41082411--41082667	40	6.5	40	87	2	333	24	27	24	23	2.00
41088563--41088639	31	2.6	30	93	4	129	25	27	18	28	1.98
41088832--41088903	25	2.9	24	85	4	81	26	20	22	30	1.98
41088859--41088928	25	2.8	25	91	0	104	24	21	27	27	1.99
41089729--41089793	27	2.4	27	79	5	69	24	24	15	35	1.94
41089825--41090271	27	16.6	28	75	9	208	31	8	20	39	1.83
41089853--41090271	81	5.2	79	74	7	299	31	8	20	39	1.83
41089854--41090271	54	7.8	54	73	8	273	30	8	20	39	1.83
41098652--41098746	40	2.4	41	82	3	104	23	15	27	33	1.95
41111671--41111720	20	2.6	19	84	9	57	42	0	22	36	1.54
41114984--41115151	48	3.5	48	79	4	216	29	19	26	23	1.98
41119257--41119306	13	3.8	13	91	2	73	50	22	2	26	1.60
41119638--41119733	40	2.5	39	76	8	99	31	29	22	16	1.96
41125954--41126005	22	2.4	22	87	6	70	48	15	21	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41127393--41127432	19	2.1	19	95	0	71	77	5	17	0	0.94
41129439--41129482	20	2.2	20	87	0	61	36	29	4	29	1.77
41129567--41129688	43	2.9	42	82	2	154	29	24	15	30	1.96
41131575--41131621	21	2.2	21	92	0	76	21	29	23	25	1.99
41139169--41139333	23	7.2	23	80	2	170	31	25	18	24	1.97
41139202--41139331	46	2.8	46	87	4	190	30	25	20	24	1.99
41139169--41139344	69	2.6	69	85	1	237	31	25	19	24	1.98
41141870--41141984	44	2.6	44	85	2	149	35	13	22	27	1.92
41141870--41142003	46	3.0	45	82	4	153	35	14	23	26	1.93
41144175--41144221	20	2.3	20	96	0	85	61	14	19	4	1.49
41145618--41145807	95	2.0	95	98	0	371	22	20	20	36	1.95
41149112--41149226	44	2.6	44	85	2	149	35	13	22	27	1.92
41149112--41149245	46	3.0	45	82	4	153	35	14	23	26	1.93
41150674--41150734	21	2.9	21	90	2	86	14	32	29	22	1.94
41151077--41151119	17	2.5	17	81	7	52	48	0	4	46	1.22
41160737--41161124	40	9.7	40	99	0	767	30	20	27	21	1.98
41162525--41162697	49	3.6	49	78	8	162	30	20	25	24	1.99
41167526--41167573	25	1.9	25	82	0	60	50	20	0	29	1.49
41167688--41167754	30	2.2	30	97	0	125	17	35	28	17	1.93
41172964--41173091	38	3.4	37	89	4	177	28	26	12	32	1.93
41173108--41173137	11	2.7	11	100	0	60	23	36	20	20	1.95
41177489--41177666	40	4.5	39	85	4	198	26	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41177495--41177666	80	2.2	79	85	3	229	25	21	27	25	1.99
41177522--41177699	79	2.2	80	82	3	200	25	21	28	24	1.99
41185484--41185574	40	2.3	40	92	3	148	24	19	27	28	1.99
41188328--41188352	11	2.3	11	100	0	50	84	0	16	0	0.63
41210049--41210156	50	2.2	50	100	0	216	22	27	20	29	1.98
41213346--41213509	46	3.5	46	75	12	172	21	31	18	28	1.97
41213295--41213509	46	4.6	46	75	14	165	21	30	18	28	1.97
41217647--41217694	24	2.0	24	95	0	87	25	27	4	43	1.72
41224442--41224525	43	2.0	43	90	0	132	26	29	20	23	1.99
41224961--41225019	30	2.0	30	83	6	75	28	23	6	40	1.80
41236131--41236293	43	3.8	43	78	4	152	30	22	17	30	1.96
41240101--41240303	40	5.1	40	83	5	234	25	28	23	23	2.00
41256958--41257296	132	2.6	131	82	4	400	35	18	17	28	1.93
41258575--41258665	44	2.0	45	97	2	175	45	6	10	37	1.66
41260574--41260851	133	2.1	133	85	1	369	29	20	19	29	1.97
41262712--41263290	289	2.0	289	100	0	1158	21	25	15	37	1.92
41272606--41272936	131	2.5	131	83	4	422	36	18	16	28	1.93
41284902--41285046	53	2.7	53	80	6	166	24	22	17	35	1.95
41285044--41285112	35	2.0	35	100	0	138	26	23	11	39	1.88
41285050--41285120	35	2.2	32	85	12	92	23	26	11	38	1.89
41288737--41288820	41	2.0	41	100	0	168	34	11	20	33	1.89
41293040--41293074	17	2.2	16	90	10	54	45	0	2	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41299589--41299627	14	2.8	14	88	0	51	38	7	20	33	1.81
41300091--41300142	15	3.2	15	73	19	50	44	0	0	55	0.99
41300175--41300211	16	2.3	16	86	13	58	40	0	0	59	0.97
41300219--41300273	22	2.6	22	85	5	69	54	0	0	45	0.99
41300219--41300264	20	2.2	20	88	7	65	54	0	0	45	0.99
41300813--41300963	43	3.5	43	80	8	164	27	15	25	31	1.96
41306509--41306603	42	2.2	42	83	7	120	35	15	21	27	1.94
41308243--41308371	48	2.7	48	76	2	143	35	28	15	20	1.93
41309865--41309979	31	3.7	31	98	1	223	27	26	17	28	1.97
41310003--41310136	42	3.2	42	98	0	259	33	20	14	31	1.93
41310284--41310353	25	2.8	25	93	0	113	24	22	25	27	2.00
41311481--41311575	42	2.2	42	83	7	120	35	15	21	27	1.94
41313215--41313343	48	2.7	48	76	2	143	35	28	15	20	1.93
41314806--41314884	31	2.5	31	100	0	158	26	26	18	27	1.98
41314908--41314999	42	2.2	42	92	0	148	34	21	14	29	1.93
41315147--41315216	25	2.8	25	93	0	113	24	22	25	27	2.00
41316143--41316255	27	4.1	27	76	13	95	33	7	18	39	1.80
41316226--41316330	27	3.9	27	80	9	124	29	6	21	41	1.79
41316362--41316453	27	3.4	27	89	0	130	40	8	23	27	1.84
41327570--41327685	21	5.5	21	76	11	94	48	17	18	16	1.82
41327593--41327710	42	2.8	43	84	7	154	49	15	18	16	1.80
41327598--41327710	21	5.4	21	74	17	92	50	15	17	15	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41330495--41330627	69	2.0	67	81	3	158	30	24	28	17	1.97
41330522--41330674	66	2.3	68	81	4	184	26	25	28	19	1.99
41330702--41330893	69	2.8	70	80	7	214	35	25	19	19	1.96
41331363--41331437	34	2.2	35	92	4	134	46	14	12	26	1.79
41336697--41336779	15	5.5	15	76	0	76	53	16	18	12	1.73
41337062--41337114	26	2.0	26	100	0	106	39	26	7	26	1.83
41341106--41341162	30	1.9	30	85	7	80	26	24	1	47	1.62
41345438--41345516	28	2.8	28	86	0	104	34	11	24	30	1.90
41347489--41347643	28	5.5	28	73	6	132	18	19	32	29	1.96
41347517--41347618	29	3.6	29	72	10	102	18	16	35	29	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276