genome.fa.s12.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  209  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69337420--69337721	48	6.3	48	99	0	595	30	27	16	24	1.97
69337736--69337831	50	1.9	50	89	0	147	19	30	23	26	1.98
69340855--69340894	15	2.7	15	80	11	55	17	20	27	35	1.95
69344896--69344940	20	2.2	21	84	11	58	33	4	13	48	1.62
69354523--69354649	66	1.9	66	95	0	227	35	7	19	37	1.79
69354748--69354789	22	1.9	22	85	9	59	40	2	0	57	1.12
69357408--69357469	27	2.3	26	78	8	70	37	0	11	51	1.38
69363814--69363893	6	13.7	6	75	17	62	17	5	0	77	0.94
69363815--69363892	30	2.7	28	82	5	102	17	5	0	76	0.96
69365208--69365245	8	5.0	8	87	6	53	89	0	10	0	0.49
69365207--69365244	12	3.2	12	92	3	60	92	0	7	0	0.40
69370700--69370778	28	2.8	28	82	0	95	32	11	26	29	1.91
69374928--69374963	17	2.1	17	100	0	72	36	16	11	36	1.84
69374931--69374972	17	2.5	17	92	0	66	38	19	9	33	1.84
69375443--69375518	38	2.0	38	100	0	152	31	15	13	39	1.86
69376677--69376716	20	2.0	20	95	0	71	20	27	20	32	1.97
69379335--69379367	14	2.4	14	90	10	50	60	0	0	39	0.97
69381927--69382045	42	2.8	43	82	6	143	23	14	29	32	1.94
69388695--69388742	25	1.9	25	86	0	69	35	22	14	27	1.93
69388778--69388824	20	2.3	20	92	7	78	36	10	19	34	1.86
69388897--69388951	23	2.3	25	90	6	87	32	18	20	29	1.96
69395474--69395585	34	3.3	34	68	17	97	33	0	41	24	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69395480--69395615	67	2.0	67	95	0	245	30	2	42	25	1.67
69395512--69395619	35	3.2	35	70	17	109	27	2	45	24	1.67
69395888--69396033	73	2.0	73	94	0	256	17	26	10	45	1.81
69397182--69397297	50	2.4	47	81	11	137	28	22	13	35	1.92
69397269--69397400	66	2.0	65	95	1	237	22	26	13	36	1.92
69399522--69399566	20	2.2	20	92	7	74	35	11	20	33	1.88
69399614--69399685	25	2.9	25	87	6	101	29	26	19	25	1.99
69399616--69399698	25	3.4	24	85	8	87	31	22	20	25	1.98
69399907--69399993	38	2.6	31	77	22	111	35	17	24	22	1.95
69406773--69406816	15	2.9	15	72	0	52	13	13	13	59	1.62
69413291--69413417	44	2.9	44	80	10	145	25	19	28	26	1.99
69413304--69413417	42	2.7	43	82	5	124	24	20	28	26	1.99
69419817--69419922	42	2.5	42	76	1	122	26	18	22	32	1.97
69419776--69419934	43	3.7	42	73	10	117	26	18	23	30	1.98
69441393--69441608	46	4.7	46	78	12	230	30	16	30	23	1.96
69441388--69441608	92	2.4	93	82	8	274	29	16	29	23	1.96
69441388--69441639	46	5.4	48	74	16	201	30	16	29	23	1.96
69449916--69449992	24	3.2	24	81	1	82	37	2	42	16	1.62
69453471--69453651	67	2.8	64	75	12	172	28	16	30	23	1.96
69457964--69458141	27	6.6	27	85	3	214	26	14	28	30	1.95
69457965--69458120	82	1.9	81	89	3	242	26	14	28	30	1.95
69457961--69458141	82	2.2	81	84	2	238	27	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69465098--69465269	47	3.7	46	75	13	133	27	18	29	25	1.98
69469393--69469614	46	4.8	46	74	8	173	28	20	28	22	1.99
69475333--69475459	38	3.3	38	83	6	159	18	17	25	38	1.92
69475880--69475909	15	2.0	15	93	0	51	30	0	16	53	1.44
69477697--69477808	39	2.9	39	87	0	143	49	20	3	26	1.65
69479619--69479667	11	4.7	11	75	14	50	34	8	18	38	1.80
69479619--69479667	20	2.4	21	89	3	73	34	8	18	38	1.80
69479715--69479784	25	2.8	25	93	0	113	25	22	22	28	1.99
69479714--69479811	25	4.0	24	82	11	76	27	22	22	27	1.99
69487605--69487642	11	3.6	11	79	13	53	36	7	18	36	1.80
69487690--69487760	25	2.8	25	95	0	124	25	22	22	29	1.99
69487690--69487784	50	1.9	50	82	8	122	26	22	23	28	1.99
69488006--69488070	31	2.1	32	88	5	98	29	13	26	30	1.94
69490552--69490831	61	4.8	56	92	4	336	48	15	2	33	1.57
69490718--69490831	52	2.4	43	73	22	120	48	15	2	33	1.59
69490526--69490800	61	4.5	61	97	0	509	49	17	1	32	1.57
69494477--69494975	47	10.6	47	97	0	908	33	8	30	27	1.86
69501186--69501247	21	3.0	21	75	0	70	33	11	46	8	1.69
69501578--69501670	43	2.2	43	82	3	116	37	24	15	22	1.93
69501655--69501771	42	2.7	44	85	5	168	32	21	21	24	1.98
69505618--69505737	33	3.6	33	86	2	134	40	17	5	36	1.71
69508795--69508878	44	1.9	44	92	0	141	36	21	23	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69529524--69529565	21	2.0	21	90	0	66	30	23	14	30	1.94
69532704--69532789	42	2.0	42	88	0	127	39	30	8	22	1.83
69537572--69537661	35	2.6	36	87	5	114	26	22	22	28	1.99
69537583--69537661	35	2.3	35	90	0	122	25	21	21	31	1.98
69541215--69541399	79	2.3	81	83	7	227	24	22	27	25	2.00
69541215--69541399	40	4.7	40	84	6	225	24	22	27	25	2.00
69541268--69541432	79	2.1	79	83	6	201	26	21	26	25	1.99
69552810--69552839	11	2.7	11	94	0	51	23	0	6	70	1.11
69562606--69562741	69	2.0	69	98	0	263	27	32	13	26	1.93
69565755--69565841	45	1.9	45	83	4	113	26	21	12	39	1.89
69573156--69573181	9	2.9	9	100	0	52	88	0	0	11	0.52
69577585--69577628	5	9.6	5	80	14	51	84	0	0	15	0.63
69577590--69577628	13	3.1	13	89	10	55	84	0	0	15	0.62
69579247--69579469	46	4.9	45	77	1	158	34	19	19	26	1.96
69579212--69579466	92	2.8	93	77	2	280	33	19	19	27	1.96
69583904--69584079	46	3.8	45	75	10	176	22	20	27	29	1.98
69583900--69584071	93	1.8	93	89	0	272	22	20	28	28	1.99
69589776--69589827	27	2.0	26	84	3	68	34	21	26	17	1.95
69593295--69593400	55	1.9	55	94	3	187	23	17	19	38	1.93
69596680--69596735	28	2.0	28	100	0	112	42	28	3	25	1.71
69600559--69600602	16	2.6	17	79	13	56	63	0	0	36	0.95
69629284--69629409	47	2.7	46	81	7	137	23	28	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69637393--69637520	47	2.7	47	86	2	168	33	28	14	23	1.93
69640541--69640588	25	1.9	25	95	0	87	52	22	12	12	1.73
69641036--69641189	42	3.7	41	80	6	175	29	24	14	31	1.95
69649056--69649270	79	2.7	79	86	5	276	22	22	27	26	1.99
69649056--69649270	39	5.4	40	88	2	285	22	22	27	26	1.99
69656786--69656990	40	5.1	40	89	1	277	22	24	27	24	2.00
69668186--69668341	42	3.7	42	84	1	204	27	25	16	30	1.97
69670131--69670157	9	3.0	9	100	0	54	22	0	22	55	1.44
69672210--69672241	16	2.1	16	94	5	57	34	31	21	12	1.91
69672221--69672262	21	2.0	22	90	4	68	35	30	19	14	1.91
69680651--69680828	27	6.6	27	83	3	205	26	15	28	29	1.96
69680652--69680807	82	1.9	81	88	3	233	26	15	28	29	1.96
69680648--69680828	82	2.2	81	83	2	229	27	15	27	29	1.96
69688259--69688284	12	2.2	12	100	0	52	50	7	0	42	1.31
69688766--69688943	27	6.6	27	83	3	205	26	15	28	29	1.96
69688767--69688922	82	1.9	81	88	3	233	26	15	28	29	1.96
69688763--69688943	82	2.2	81	83	2	229	27	15	27	29	1.96
69691919--69691980	27	2.3	27	85	0	79	20	27	14	37	1.92
69692876--69693145	67	4.0	67	99	0	522	24	13	22	39	1.90
69695399--69695471	38	1.9	37	86	2	101	15	24	27	32	1.95
69698725--69698765	22	2.0	20	85	9	55	60	7	0	31	1.24
69706985--69707079	47	2.0	46	93	2	163	28	30	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69708434--69708465	15	2.0	17	88	11	50	43	31	0	25	1.55
69715416--69715522	26	4.2	26	90	2	171	31	8	24	35	1.85
69722436--69722543	26	4.2	26	93	0	180	34	7	22	36	1.82
69727221--69727257	18	2.1	18	94	0	65	13	35	5	45	1.66
69728889--69728921	15	2.2	15	100	0	66	21	36	30	12	1.90
69729662--69729731	36	1.9	36	83	11	90	34	14	24	27	1.94
69738648--69738684	18	2.1	18	100	0	74	27	10	5	56	1.55
69744786--69744819	9	3.6	9	92	8	50	85	0	2	11	0.71
69744804--69744841	11	3.5	11	89	3	51	73	0	15	10	1.09
69744786--69744891	10	10.8	10	74	18	57	73	1	12	12	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276