genome.fa.s12.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  207  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68788128--68788162	18	1.9	18	88	11	54	57	0	20	22	1.41
68790525--68790576	27	2.0	26	84	3	68	34	21	26	17	1.95
68791226--68791423	27	7.4	27	84	2	247	24	20	19	36	1.95
68791230--68791423	53	3.6	54	90	2	277	24	20	18	36	1.95
68791226--68791423	80	2.5	80	86	1	272	24	20	19	36	1.95
68792368--68792475	54	2.0	54	90	0	171	31	31	8	28	1.87
68799491--68799530	8	5.0	8	84	0	53	7	35	30	27	1.84
68799491--68799527	16	2.3	16	95	0	65	5	37	32	24	1.78
68806496--68806533	16	2.4	16	90	0	58	55	21	15	7	1.66
68806762--68806896	29	4.7	29	79	8	136	25	14	35	24	1.94
68813181--68813364	81	2.3	82	85	1	246	33	27	14	25	1.95
68813181--68813370	41	4.7	41	84	3	233	32	26	15	25	1.95
68831925--68831956	16	2.0	16	93	0	55	43	28	12	15	1.83
68832571--68832652	35	2.4	34	85	4	112	13	25	3	57	1.53
68833227--68833277	24	2.1	24	92	0	84	50	17	19	11	1.76
68833239--68833271	16	2.1	16	94	0	57	45	18	24	12	1.83
68833488--68833611	29	4.4	28	75	4	104	29	15	27	28	1.96
68833488--68833577	29	3.1	29	85	1	110	27	16	27	27	1.97
68836804--68836854	25	2.0	25	92	0	84	49	19	5	25	1.71
68837928--68837988	27	2.2	28	80	8	81	32	16	21	29	1.95
68840730--68840797	32	2.2	31	89	2	100	16	32	32	19	1.93
68842469--68842534	27	2.4	28	84	5	89	33	28	10	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68842518--68842706	40	4.4	40	81	11	216	33	28	15	22	1.95
68842518--68842706	86	2.2	86	100	0	378	33	28	15	22	1.95
68846473--68846577	42	2.5	42	76	0	111	32	29	15	22	1.95
68846686--68846779	37	2.6	36	84	5	134	26	27	17	28	1.97
68849424--68849500	28	2.8	28	79	0	82	29	28	10	31	1.90
68855611--68855707	42	2.3	43	85	8	146	31	17	15	35	1.91
68858925--68859035	29	3.9	29	76	3	109	24	29	17	28	1.97
68859117--68859156	9	4.3	9	84	6	53	15	37	20	27	1.92
68859116--68859162	19	2.5	19	86	3	60	19	34	17	29	1.94
68860346--68860378	16	2.1	16	94	0	57	15	6	30	48	1.69
68862401--68862434	18	1.9	18	94	5	61	20	44	23	11	1.84
68869216--68869258	22	2.0	22	90	0	68	46	16	2	34	1.60
68875934--68875976	22	2.0	22	90	0	68	46	16	2	34	1.60
68885410--68885595	75	2.5	74	86	7	247	53	12	6	27	1.63
68885765--68885838	33	2.2	33	83	9	89	28	9	43	18	1.81
68885778--68885850	33	2.2	33	82	4	85	28	9	43	17	1.81
68887113--68887168	28	2.0	29	82	3	69	21	42	19	16	1.89
68890873--68891582	104	6.9	102	88	7	792	53	15	1	30	1.49
68892472--68892521	19	2.6	19	81	12	66	44	2	0	54	1.11
68892473--68892522	20	2.5	19	83	6	64	44	2	0	54	1.11
68892594--68892631	12	3.0	13	84	7	60	23	2	0	73	0.95
68900986--68901035	22	2.3	22	85	0	73	48	24	14	14	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68903749--68903773	13	1.9	13	100	0	50	32	16	20	32	1.94
68904749--68904871	41	3.0	41	90	0	183	26	27	21	23	1.99
68905136--68905390	27	9.4	27	78	10	148	30	9	20	39	1.84
68905167--68905309	54	2.6	54	84	7	166	30	9	18	40	1.83
68905275--68905535	54	4.8	53	77	7	222	29	7	22	40	1.81
68905303--68905430	53	2.4	54	86	1	168	28	10	22	38	1.87
68905276--68905535	27	9.6	27	81	4	150	29	7	21	40	1.81
68905542--68905591	26	2.0	25	92	4	82	30	26	16	28	1.96
68908352--68908404	22	2.4	22	83	0	79	45	26	16	11	1.82
68908813--68908935	41	3.0	39	83	7	147	28	26	21	23	1.99
68909199--68909319	27	4.4	27	76	10	95	27	9	16	47	1.77
68909202--68909381	27	6.7	27	75	8	93	27	8	17	46	1.76
68909336--68909398	27	2.3	27	91	0	99	28	4	22	44	1.73
68909397--68909462	27	2.5	27	85	2	80	28	22	15	33	1.94
68912010--68912069	13	4.1	14	71	23	52	65	1	1	31	1.13
68913170--68913270	9	10.7	9	70	17	62	63	2	3	29	1.27
68913247--68913303	20	2.7	22	76	13	66	66	0	5	28	1.13
68913204--68913338	58	2.4	56	78	10	132	62	1	7	28	1.30
68921232--68921269	20	1.9	20	88	0	58	36	15	0	47	1.46
68926270--68926454	39	4.7	39	91	0	289	20	20	28	30	1.98
68929676--68929714	13	3.1	12	85	7	51	30	2	5	61	1.31
68929676--68929714	19	2.1	19	90	9	62	30	2	5	61	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68929676--68929714	6	6.2	6	82	11	51	30	2	5	61	1.31
68929856--68929924	24	3.0	24	75	21	67	31	4	4	59	1.37
68929886--68929952	18	3.3	21	78	14	61	25	4	4	65	1.30
68929975--68930009	17	1.9	17	88	11	52	22	8	8	60	1.54
68931844--68931900	26	2.3	25	91	8	91	19	24	28	28	1.98
68945324--68945825	96	5.3	95	91	3	739	33	8	29	27	1.87
68945324--68945825	47	10.6	47	89	4	715	33	8	29	27	1.87
68945324--68945825	143	3.5	141	88	5	715	33	8	29	27	1.87
68954163--68954307	27	5.4	27	81	3	166	33	17	21	27	1.95
68954163--68954308	54	2.7	54	82	4	186	33	17	21	28	1.95
68954163--68954320	81	2.0	81	85	2	219	32	17	20	29	1.96
68956932--68957055	46	2.8	45	80	12	148	22	29	19	28	1.98
68959074--68959177	27	3.9	27	89	0	163	28	19	8	43	1.80
68959060--68959196	54	2.5	54	78	0	166	32	18	8	39	1.82
68959035--68959238	27	7.6	27	81	3	124	36	20	8	34	1.82
68959295--68959420	27	4.7	27	86	3	173	39	22	8	29	1.84
68959295--68959523	27	8.4	27	75	8	153	40	19	9	31	1.83
68959295--68959444	81	1.9	81	84	8	207	40	21	9	28	1.84
68959562--68959648	27	3.2	27	91	3	131	33	21	26	18	1.96
68960354--68960430	9	7.8	10	69	16	54	38	9	19	32	1.83
68960361--68960447	20	4.3	20	95	2	149	39	10	19	31	1.85
68960372--68960447	11	7.5	11	66	16	56	39	10	19	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68960497--68960671	26	6.8	26	92	0	282	26	23	23	26	2.00
68960497--68960671	52	3.4	52	98	1	336	26	23	23	26	2.00
68960816--68960907	42	2.2	42	92	0	148	29	14	21	34	1.93
68960931--68961009	31	2.5	31	100	0	158	27	18	26	26	1.98
68962439--68962537	38	2.6	38	85	0	126	35	4	11	49	1.57
68964008--68964060	12	4.4	12	73	17	56	52	3	0	43	1.19
68965609--68965644	17	2.1	17	94	0	63	19	11	19	50	1.77
68967978--68968095	51	2.3	52	86	5	170	28	21	7	42	1.80
68982139--68982169	16	1.9	16	93	0	53	35	22	0	41	1.54
68982136--68982175	20	2.0	20	85	0	53	37	22	0	40	1.54
68982831--68982866	18	2.0	18	88	0	54	27	16	5	50	1.68
68988922--68988952	16	1.9	16	93	0	53	35	22	0	41	1.54
68988919--68988958	20	2.0	20	85	0	53	37	22	0	40	1.54
68989144--68989398	55	4.8	53	80	9	245	21	25	17	36	1.95
68989191--68989391	108	1.8	110	90	4	327	22	25	17	34	1.96
68995235--68995367	48	2.8	48	82	2	160	21	13	27	36	1.91
68999524--68999784	40	6.6	40	94	1	411	23	21	26	28	1.99
69009521--69009622	40	2.6	40	92	4	163	23	23	27	25	2.00
69011160--69011224	31	2.1	30	86	8	87	38	20	18	23	1.93
69014235--69014336	6	16.8	6	78	13	111	48	14	17	19	1.82
69014235--69014336	30	3.4	30	93	1	168	48	14	17	19	1.82
69014454--69014519	27	2.5	26	85	7	87	37	22	22	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69014454--69014527	27	2.8	27	78	13	82	36	21	24	17	1.95
69014478--69014535	27	2.1	27	84	6	73	36	27	20	15	1.93
69014838--69014920	27	3.1	26	81	5	94	37	19	22	20	1.94
69015120--69015368	27	9.2	27	82	3	261	27	18	17	36	1.93
69015118--69015361	54	4.5	54	88	3	305	26	19	17	36	1.94
69015411--69015683	27	10.1	27	88	5	331	41	9	22	27	1.84
69015415--69015717	81	3.7	81	83	3	335	38	9	23	28	1.85
69022325--69022430	53	2.0	53	100	0	212	47	7	11	33	1.68
69028970--69029038	30	2.3	31	87	7	97	37	18	20	23	1.94
69029107--69029173	33	2.0	33	94	0	116	20	20	23	34	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276