genome.fa.s12.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  102  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32242395--32242495	23	4.3	23	76	8	87	39	20	18	20	1.92
32242807--32242851	22	2.0	22	100	0	90	44	8	6	40	1.62
32244341--32244374	17	1.9	18	94	5	61	38	0	41	20	1.53
32247164--32247224	30	2.0	31	93	3	106	37	24	9	27	1.87
32251470--32251582	27	4.2	28	87	5	162	33	21	24	20	1.97
32251470--32251583	55	2.1	54	87	6	169	34	21	24	20	1.97
32251697--32251760	26	2.4	27	92	2	103	26	9	26	37	1.87
32254408--32254464	28	2.0	28	100	0	114	17	14	29	38	1.89
32259302--32259386	42	2.0	42	100	0	170	36	4	18	40	1.72
32271546--32271579	16	2.2	15	89	5	50	38	0	26	35	1.57
32275221--32275263	23	1.9	22	85	4	59	46	13	20	18	1.83
32276984--32277223	48	5.0	48	71	4	160	27	16	28	27	1.97
32276983--32277224	96	2.5	98	84	3	310	26	16	28	28	1.97
32282855--32283039	40	4.7	40	81	5	178	27	28	20	24	1.99
32282822--32283039	40	5.5	39	77	7	165	25	27	20	25	1.99
32309007--32309176	43	4.0	43	73	9	141	27	14	24	33	1.94
32323177--32323256	27	2.9	28	75	5	92	32	22	22	22	1.98
32324488--32324527	13	3.1	13	96	0	71	17	32	35	15	1.91
32325825--32325850	11	2.4	11	100	0	52	57	7	0	34	1.27
32329684--32329733	20	2.5	20	83	0	64	10	34	38	18	1.84
32331241--32331447	43	4.9	42	82	7	274	27	24	16	30	1.97
32331245--32331446	85	2.4	85	100	0	404	27	24	16	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32338036--32338092	27	2.1	27	86	0	78	38	17	12	31	1.87
32338338--32338443	41	2.6	41	89	0	158	22	21	27	28	1.99
32338607--32338666	22	2.7	22	82	5	68	18	25	25	31	1.97
32338869--32338915	22	2.1	22	92	0	76	10	23	25	40	1.87
32339908--32339954	23	2.0	23	100	0	94	25	8	25	40	1.84
32341630--32341710	27	3.0	27	85	0	108	29	20	23	25	1.99
32341695--32342097	27	15.0	26	78	4	257	40	18	9	30	1.83
32341703--32342088	81	4.8	81	79	4	298	41	19	8	30	1.81
32342333--32342370	18	2.1	18	90	0	58	47	2	31	18	1.62
32342372--32342494	41	3.0	41	92	0	201	20	19	30	29	1.97
32342636--32342700	22	3.0	22	82	8	78	21	24	21	32	1.98
32349003--32349187	40	4.7	40	81	5	178	27	28	20	24	1.99
32348970--32349187	40	5.5	39	77	7	165	25	27	20	25	1.99
32355614--32355876	40	6.6	40	87	3	309	26	28	20	23	1.99
32363194--32363222	14	2.0	15	93	6	51	62	20	0	17	1.33
32367920--32368138	92	2.4	92	89	3	316	26	27	23	22	1.99
32367919--32368093	46	3.8	46	98	0	332	26	27	24	21	1.99
32370534--32370612	15	5.3	15	79	8	81	55	15	17	11	1.68
32370535--32370612	30	2.6	30	82	8	95	56	15	16	11	1.67
32372966--32373959	28	35.5	28	99	0	1909	32	28	13	25	1.94
32382194--32382413	46	4.8	46	84	4	282	28	29	21	20	1.98
32382291--32382433	46	3.1	45	69	21	116	30	27	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32388615--32388641	13	2.1	13	100	0	54	29	14	18	37	1.91
32392379--32392421	15	3.2	15	69	30	51	65	0	6	27	1.18
32392372--32392421	25	2.0	25	100	0	100	64	0	8	28	1.22
32392688--32392732	20	2.3	18	81	11	54	66	0	4	28	1.11
32394758--32395012	55	4.8	53	77	10	236	37	16	24	20	1.93
32394765--32394965	108	1.8	109	89	4	316	35	17	25	21	1.95
32395204--32395234	16	1.9	16	93	0	53	41	0	22	35	1.54
32400266--32400410	40	3.6	40	85	4	184	22	26	24	26	2.00
32404807--32404863	27	2.1	27	93	0	96	35	21	15	28	1.94
32407284--32407459	50	3.5	49	81	7	194	25	18	27	28	1.98
32407277--32407470	49	3.9	48	76	10	176	25	19	27	27	1.98
32408867--32408900	12	3.0	12	87	12	54	41	0	17	41	1.50
32408867--32408909	22	2.0	22	86	9	61	44	0	18	37	1.50
32410768--32410804	13	2.8	13	95	0	65	24	40	29	5	1.77
32412892--32413054	43	3.8	43	74	11	145	24	17	25	32	1.97
32415778--32415810	14	2.4	14	100	0	66	51	21	6	21	1.69
32420152--32420367	46	4.6	47	76	8	172	22	28	18	30	1.98
32420055--32420316	98	2.7	94	79	5	256	25	27	17	30	1.97
32420053--32420367	49	6.6	48	74	8	193	25	27	18	29	1.98
32426501--32426576	37	2.1	37	97	0	143	39	18	5	36	1.73
32428667--32428725	24	2.4	25	78	15	79	30	20	22	27	1.98
32438996--32439021	13	2.0	13	100	0	52	61	30	0	7	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32441179--32441236	28	2.1	28	96	0	107	20	17	18	43	1.89
32444561--32444717	68	2.4	64	81	9	174	26	29	16	27	1.97
32445182--32445241	30	2.0	30	87	3	86	30	25	3	41	1.71
32450466--32450609	46	3.1	46	70	14	125	29	27	20	23	1.99
32457677--32457732	15	3.7	15	79	9	60	17	10	16	55	1.69
32459573--32459651	32	2.5	32	83	8	106	26	25	20	27	1.99
32471880--32471977	28	3.5	28	90	2	135	33	28	12	25	1.92
32473770--32473843	29	2.6	29	89	4	105	25	29	14	29	1.95
32478737--32478858	49	2.5	49	82	2	147	28	23	27	19	1.98
32478631--32478858	98	2.4	95	78	8	230	28	22	26	21	1.99
32479647--32479678	12	2.6	13	90	9	50	50	25	6	18	1.70
32480199--32480428	43	5.4	43	68	9	175	25	24	20	30	1.99
32480182--32480483	85	3.6	85	91	0	460	27	24	19	28	1.99
32480241--32480470	42	5.4	42	68	10	144	26	23	20	29	1.99
32484155--32484226	24	3.2	24	66	22	73	55	29	2	12	1.51
32484143--32484226	44	2.0	41	90	9	134	54	30	2	11	1.49
32484599--32484636	13	2.9	14	88	11	62	21	7	0	71	1.11
32484605--32484657	11	4.7	11	88	9	63	13	7	3	75	1.15
32484599--32484636	12	2.9	13	92	7	60	21	7	0	71	1.11
32484619--32484656	10	3.7	10	92	3	58	10	7	5	76	1.15
32484618--32484657	11	3.7	11	90	6	64	10	7	5	77	1.11
32487044--32487271	113	2.0	113	99	0	447	24	23	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32490024--32490077	24	2.2	25	78	15	60	11	22	3	62	1.43
32497966--32498189	47	4.8	45	82	8	186	23	20	28	28	1.99
32498013--32498135	47	2.6	47	97	0	228	22	20	30	26	1.98
32503523--32503576	20	2.7	20	82	0	63	24	20	18	37	1.94
32503523--32503596	30	2.5	30	86	8	98	21	20	18	39	1.93
32503523--32503587	20	3.2	20	71	16	53	23	21	16	38	1.93
32506976--32507198	45	5.0	45	81	4	236	24	16	24	34	1.95
32507237--32507275	16	2.4	17	86	4	53	48	33	5	12	1.63
32508829--32508915	29	3.0	29	77	8	106	26	13	29	29	1.94
32520289--32520662	192	2.0	190	84	3	500	27	30	16	25	1.97
32520293--32520662	48	7.7	48	83	3	433	27	30	16	25	1.97
32523679--32523739	30	2.0	30	83	0	77	39	6	26	27	1.81
32524249--32524456	67	3.2	66	73	12	187	31	16	29	22	1.96
32525870--32525973	27	3.8	26	82	7	118	17	23	22	37	1.94
32525870--32525981	54	2.1	54	84	3	145	16	23	23	37	1.93
32526939--32527027	30	3.0	30	79	11	94	56	15	17	10	1.67
32526939--32527021	15	5.6	14	73	10	58	55	16	18	9	1.68
32526950--32527027	15	5.2	15	75	9	70	55	15	17	11	1.69
32529951--32530074	47	2.6	47	98	0	239	26	31	20	21	1.98
32529951--32530123	47	3.7	45	87	6	206	27	30	20	21	1.98
32531509--32531661	42	3.7	40	76	13	139	30	18	24	27	1.98
32533564--32533694	68	1.9	69	87	1	192	49	8	3	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32536669--32536719	22	2.4	22	86	3	68	9	31	41	17	1.82
32538488--32538672	79	2.3	82	83	7	229	25	27	22	24	2.00
32538488--32538672	40	4.7	40	83	6	225	25	27	22	24	2.00
32546458--32546642	40	4.7	40	82	6	216	25	26	23	24	2.00
32546458--32546642	79	2.3	82	82	7	220	25	26	23	24	2.00
32554424--32554515	39	2.3	39	88	5	132	25	28	22	23	2.00
32554405--32554568	40	4.1	40	80	10	176	24	27	23	25	2.00
32556038--32556237	100	2.0	100	100	0	400	37	15	17	31	1.90
32565488--32565551	33	2.0	32	87	3	92	21	25	18	34	1.96
32574443--32574500	27	2.1	27	83	0	71	43	18	15	22	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276