genome.fa.s12.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  141  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45969571--45969666	42	2.3	42	88	0	147	32	15	23	28	1.95
45971497--45971539	20	2.2	20	100	0	86	46	18	4	30	1.69
45972918--45972957	15	2.6	15	84	4	53	77	0	7	15	0.98
45975602--45975634	16	2.1	16	94	0	57	51	33	3	12	1.54
45976858--45976900	8	5.4	8	91	0	68	51	20	23	4	1.66
45977133--45977243	29	3.9	29	78	4	120	25	15	33	26	1.95
45979869--45979899	16	1.9	16	93	0	53	51	19	6	22	1.69
45981360--45981499	29	4.9	29	84	5	162	26	15	32	26	1.95
45990076--45990169	40	2.3	40	87	0	125	23	18	25	32	1.97
45991484--45991522	20	1.9	21	89	5	62	69	10	2	17	1.28
45996071--45996274	28	7.3	28	88	0	255	24	16	33	25	1.95
45996590--45996770	27	6.7	27	88	1	229	38	19	10	31	1.86
45996612--45996768	81	1.9	81	92	0	260	37	19	10	32	1.86
45996642--45996810	81	2.1	81	82	4	198	37	20	13	29	1.90
45998865--45999784	458	2.0	458	99	0	1813	28	11	26	33	1.91
46000080--46000211	55	2.4	56	87	2	185	23	15	34	26	1.94
46000080--46000211	28	4.8	28	86	1	176	23	15	34	26	1.94
46000078--46000224	28	5.3	28	85	1	170	22	15	34	27	1.94
46000541--46000760	27	8.1	27	82	1	235	40	19	8	32	1.82
46000739--46000782	22	2.0	22	90	0	70	43	20	6	29	1.78
46001350--46001417	27	2.6	27	76	6	68	23	17	26	32	1.97
46002656--46002707	25	2.1	25	85	0	68	38	15	9	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46006984--46007141	72	2.2	72	93	5	284	20	18	29	30	1.97
46006946--46007313	176	2.1	176	95	1	666	19	19	30	30	1.96
46007160--46007383	72	3.1	72	95	0	387	22	17	29	30	1.97
46007343--46007395	27	2.0	26	88	3	79	15	20	33	30	1.93
46008852--46008896	23	2.0	24	86	8	67	60	2	15	22	1.46
46013281--46013613	168	2.0	168	92	0	549	30	24	17	27	1.97
46017937--46017970	17	1.9	18	94	5	61	64	0	2	32	1.08
46023602--46023641	21	1.9	21	84	0	53	57	2	5	35	1.34
46027761--46027888	29	4.3	29	75	5	103	44	24	11	19	1.84
46028015--46028158	54	2.7	54	84	0	189	26	26	14	32	1.95
46032144--46032441	62	4.9	59	73	10	226	47	23	9	19	1.79
46032100--46032458	91	3.9	91	96	1	632	47	22	10	19	1.80
46032144--46032442	29	9.9	28	72	12	220	47	23	10	19	1.79
46036923--46036960	19	2.0	19	90	10	60	26	0	0	73	0.83
46045457--46045553	49	2.0	48	91	0	149	45	14	14	24	1.82
46046604--46046638	18	1.9	18	88	0	52	40	5	25	28	1.78
46049034--46049078	18	2.5	18	85	0	63	22	6	20	51	1.70
46049975--46050031	18	3.3	18	80	7	66	22	10	45	21	1.82
46051481--46051530	26	1.9	26	91	0	82	32	10	24	34	1.88
46053405--46053459	18	3.1	18	83	0	65	27	5	18	49	1.69
46062831--46062870	20	2.0	20	90	0	62	45	5	35	15	1.68
46070435--46070552	45	2.6	45	79	2	121	30	19	26	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46073247--46074289	52	20.2	52	96	2	1876	34	15	22	27	1.94
46074185--46074289	46	2.3	46	94	0	183	37	13	21	27	1.91
46074253--46074358	37	2.9	37	90	2	171	36	16	21	24	1.94
46075286--46075352	34	2.0	34	96	0	125	23	40	23	11	1.88
46079447--46079513	34	2.0	34	93	0	116	40	20	14	23	1.90
46089279--46089440	43	3.8	42	74	5	128	28	14	24	32	1.95
46097310--46097374	9	7.2	9	77	6	69	44	20	9	26	1.81
46097309--46097374	27	2.4	27	80	5	80	45	19	9	25	1.80
46097523--46097566	18	2.4	18	92	0	70	11	2	45	40	1.53
46098028--46098058	14	2.1	15	94	5	55	32	0	6	61	1.21
46100957--46101151	96	2.0	96	95	0	354	37	17	7	36	1.79
46102147--46102423	76	3.7	75	77	2	250	34	19	19	27	1.96
46103394--46103437	21	2.0	22	86	4	63	47	4	4	43	1.44
46106554--46106586	16	2.1	16	88	5	50	63	12	0	24	1.28
46108279--46108457	62	2.9	62	94	0	322	40	19	5	34	1.75
46109724--46109787	7	8.9	7	79	6	65	81	15	3	0	0.82
46110223--46110280	20	2.9	18	80	14	62	79	1	12	6	1.00
46110214--46110280	7	9.7	7	69	15	50	79	2	11	5	1.03
46110214--46110280	13	4.9	14	76	12	50	79	2	11	5	1.03
46110238--46110279	12	3.3	12	87	12	50	80	2	11	4	0.95
46110621--46110816	108	1.8	108	89	2	313	25	18	10	45	1.80
46111294--46111552	44	6.0	44	77	4	224	25	16	28	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46111296--46111561	132	2.0	129	91	2	424	27	15	27	29	1.96
46111573--46111829	50	5.2	49	68	3	165	28	22	24	24	2.00
46111573--46111853	100	2.8	100	88	1	395	29	22	23	24	1.99
46111933--46112292	44	8.2	44	66	14	136	30	20	23	25	1.98
46112124--46112550	130	3.2	130	81	5	383	28	20	23	27	1.99
46111946--46112283	173	1.9	174	89	3	482	30	21	23	25	1.99
46112513--46112634	40	2.9	41	83	8	158	34	23	20	21	1.97
46112602--46113024	130	3.3	130	91	0	657	29	20	24	25	1.99
46114995--46115027	16	2.1	16	88	5	50	63	12	0	24	1.28
46117057--46117498	144	3.1	143	85	4	559	33	15	22	28	1.95
46146016--46146834	72	11.4	72	100	0	1638	38	11	25	24	1.88
46163113--46163157	18	2.5	19	78	10	58	24	26	13	35	1.92
46166690--46166736	19	2.5	18	83	13	51	65	2	4	27	1.22
46166683--46166737	20	2.6	21	78	18	53	65	1	3	29	1.20
46166798--46166873	31	2.5	29	85	6	89	36	2	1	59	1.20
46170934--46170975	17	2.5	17	92	0	66	50	23	21	4	1.68
46174091--46174390	72	4.2	72	81	5	381	24	19	25	30	1.98
46174054--46174354	144	2.1	144	98	0	584	25	18	25	30	1.98
46174054--46174388	144	2.3	144	92	3	496	25	19	24	30	1.98
46175166--46175195	15	2.0	15	93	0	51	46	3	0	50	1.18
46176015--46176314	150	2.0	150	99	0	591	24	24	16	35	1.94
46176814--46176856	23	2.0	21	90	9	68	46	4	0	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46183321--46183384	32	2.0	32	100	0	128	31	15	15	37	1.89
46183327--46183395	32	2.2	32	89	5	104	31	15	13	39	1.86
46186406--46186564	80	2.0	80	97	0	300	41	16	13	28	1.86
46192498--46192610	23	5.0	23	87	1	156	43	4	28	23	1.73
46196910--46197000	23	4.0	23	89	0	137	45	4	26	24	1.72
46205933--46205977	18	2.5	19	78	10	58	24	26	13	35	1.92
46218117--46218161	18	2.5	19	78	10	58	24	26	13	35	1.92
46221752--46221798	19	2.5	18	83	13	51	65	2	4	27	1.22
46221745--46221799	20	2.6	21	78	18	53	65	1	3	29	1.20
46221860--46221937	32	2.5	32	81	8	99	38	2	0	58	1.12
46221860--46221940	31	2.6	32	82	9	105	39	2	0	58	1.12
46226032--46226073	17	2.5	17	92	0	66	50	23	21	4	1.68
46229192--46229563	72	5.2	73	80	8	465	26	17	26	29	1.98
46229155--46229563	144	2.8	144	99	0	800	26	17	25	29	1.98
46230339--46230368	15	2.0	15	93	0	51	46	3	0	50	1.18
46230462--46230491	15	2.0	15	93	0	51	46	3	0	50	1.18
46230332--46230575	122	2.0	123	98	0	472	41	12	6	39	1.69
46231959--46232001	23	2.0	21	90	9	68	46	4	0	48	1.22
46247530--46247617	23	3.8	23	83	4	106	43	4	30	21	1.73
46247534--46247624	46	2.0	46	84	4	121	42	4	29	23	1.73
46251924--46252014	23	4.0	23	89	0	137	45	4	26	24	1.72
46260947--46260991	18	2.5	19	78	10	58	24	26	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46267128--46267174	21	2.2	22	92	3	78	21	19	38	21	1.94
46271785--46271818	10	3.5	10	88	8	52	32	0	5	61	1.20
46271755--46271876	9	13.4	9	71	16	74	42	1	2	53	1.24
46271763--46271884	19	6.5	19	75	13	85	40	1	2	55	1.23
46271788--46271884	19	5.2	19	78	13	96	41	0	3	55	1.15
46271828--46271891	20	3.4	19	85	6	85	40	0	1	57	1.08
46272208--46272284	13	5.9	13	79	0	82	31	6	25	36	1.82
46272210--46272284	26	2.9	26	79	0	96	32	6	25	36	1.82
46273169--46273212	20	2.3	19	84	11	54	70	2	0	27	0.99
46273171--46273217	19	2.5	19	76	13	51	68	4	0	27	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276