genome.fa.s12.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  135  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43761659--43761689	14	2.2	14	94	0	53	9	25	32	32	1.88
43766866--43766893	5	5.6	5	100	0	56	0	0	35	64	0.94
43773761--43773788	5	5.6	5	100	0	56	0	0	35	64	0.94
43778989--43779169	40	4.6	40	81	6	208	24	21	28	25	1.99
43779038--43779202	79	2.1	79	82	6	192	26	20	27	25	1.99
43781890--43782067	46	3.8	46	70	7	162	29	29	19	21	1.98
43781897--43782068	93	1.8	93	87	0	254	29	29	19	21	1.98
43784454--43784542	15	6.0	15	74	11	76	57	13	17	11	1.65
43786133--43786186	27	2.0	27	96	0	99	33	24	11	31	1.90
43787488--43787659	93	1.8	93	87	0	254	28	29	20	22	1.98
43790307--43790442	56	2.4	56	91	0	227	31	22	14	30	1.94
43791585--43791613	14	2.0	15	93	6	51	48	20	0	31	1.50
43795524--43795586	30	2.1	30	100	0	126	42	17	9	30	1.81
43799367--43799410	21	2.1	21	91	0	70	34	13	18	34	1.90
43799406--43799535	40	3.2	40	83	1	161	25	16	25	33	1.96
43802422--43802566	48	3.0	48	81	6	161	21	17	27	33	1.95
43810574--43810616	19	2.4	18	84	7	61	46	9	0	44	1.35
43812007--43812067	30	2.0	30	87	0	86	40	6	22	29	1.79
43812734--43812985	68	3.8	64	75	7	186	29	16	30	23	1.96
43819005--43819089	44	1.9	44	97	0	161	21	23	18	36	1.95
43828767--43828844	39	2.0	39	87	0	111	32	20	12	34	1.90
43831572--43831756	40	4.7	40	80	10	186	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43831625--43831789	79	2.1	79	81	8	185	26	20	27	24	1.99
43833864--43834023	51	3.2	50	90	1	248	29	23	14	32	1.94
43841674--43841827	51	3.0	50	91	1	245	29	22	14	32	1.94
43843312--43843490	89	2.0	89	90	2	279	18	30	12	38	1.88
43852927--43852978	25	2.0	26	96	3	97	15	23	0	61	1.33
43861776--43861808	16	2.1	16	94	0	57	39	15	6	39	1.72
43861968--43862090	41	2.9	42	79	9	135	26	25	20	27	1.99
43862783--43862812	15	2.0	15	93	0	51	56	16	0	26	1.40
43863332--43863360	14	2.0	15	93	6	51	51	20	0	27	1.47
43872573--43872618	12	4.1	12	72	16	53	34	0	32	32	1.58
43879153--43879190	19	2.0	20	85	15	53	39	23	0	36	1.55
43879419--43879589	93	1.8	93	88	0	261	30	27	19	22	1.98
43886781--43886810	15	2.0	15	93	0	51	10	13	26	50	1.73
43895528--43895565	19	2.0	20	85	15	53	39	23	0	36	1.55
43895736--43895875	69	2.0	69	95	0	253	36	25	14	23	1.93
43895861--43896028	46	3.6	45	75	7	167	30	26	19	23	1.98
43895863--43896032	93	1.8	93	90	0	277	30	27	19	22	1.98
43899608--43899638	16	1.9	16	93	0	53	35	16	6	41	1.74
43899793--43899962	43	4.0	42	81	10	204	30	27	18	22	1.98
43900267--43900303	16	2.4	16	90	4	58	45	13	0	40	1.43
43902829--43903008	48	3.8	48	82	2	227	20	18	28	32	1.96
43902832--43903008	96	1.8	96	89	2	275	19	18	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43912261--43912357	27	3.6	27	87	2	131	29	29	14	25	1.95
43914848--43915036	51	3.8	48	78	4	191	31	24	16	27	1.97
43914955--43915036	26	3.2	26	67	19	73	32	28	12	26	1.92
43914860--43915041	101	1.8	99	87	2	274	31	24	16	26	1.96
43914910--43915046	50	2.7	51	83	1	177	32	26	15	26	1.95
43914956--43915081	50	2.5	50	81	2	135	36	26	11	25	1.90
43915058--43915092	14	2.5	14	95	0	61	37	22	14	25	1.92
43916482--43916534	22	2.4	22	96	0	97	20	33	15	30	1.93
43922093--43922126	9	3.8	9	84	0	50	26	14	11	47	1.79
43922087--43922129	18	2.4	18	100	0	86	25	18	11	44	1.84
43925562--43925607	17	2.7	18	87	12	71	23	19	30	26	1.98
43926944--43927123	48	3.8	48	86	5	240	25	15	31	27	1.96
43929926--43929969	21	2.1	21	100	0	88	29	9	43	18	1.80
43934338--43934557	48	4.6	48	78	4	205	26	19	28	25	1.98
43934338--43934561	96	2.3	96	79	6	240	25	18	29	26	1.98
43935804--43935848	18	2.4	18	85	3	63	28	20	35	15	1.93
43935815--43935856	18	2.3	18	84	12	50	21	21	38	19	1.94
43937226--43937254	5	5.8	5	100	0	58	41	20	37	0	1.53
43937257--43937353	48	2.1	48	82	7	119	35	13	22	28	1.92
43937257--43937353	46	2.1	46	84	3	122	35	13	22	28	1.92
43940825--43940888	27	2.4	27	86	0	74	34	21	17	26	1.95
43945410--43945468	27	2.2	27	87	0	82	33	23	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43947735--43947790	21	2.5	22	72	16	53	19	16	10	53	1.71
43952903--43952943	17	2.3	19	80	16	52	51	0	14	34	1.43
43953326--43953480	43	3.6	43	78	5	143	26	16	24	32	1.96
43969100--43969352	68	3.9	64	75	10	174	23	29	16	30	1.97
43972971--43973129	43	3.7	43	77	8	135	27	15	24	32	1.96
43981847--43981946	42	2.4	42	88	3	139	33	17	22	28	1.96
43983359--43983587	48	4.8	48	80	0	242	27	27	16	27	1.97
43983360--43983581	96	2.3	96	89	0	336	28	27	16	27	1.97
43987939--43988110	48	3.6	48	90	0	281	26	18	27	27	1.98
43991729--43991851	45	2.7	45	89	2	185	28	27	22	21	1.99
43991844--43992155	38	8.2	38	90	0	437	31	25	21	20	1.98
43992425--43992559	43	3.1	44	80	6	166	27	29	17	25	1.98
43998053--43998083	13	2.5	12	94	5	53	83	3	6	6	0.88
44007525--44007628	38	2.7	38	77	0	109	24	20	24	31	1.98
44007621--44007731	42	2.6	43	91	2	188	11	26	31	30	1.92
44008063--44008183	45	2.7	45	94	2	208	25	19	24	30	1.98
44012472--44012534	21	3.0	21	83	2	72	33	31	4	30	1.78
44013431--44013526	30	3.2	29	75	7	86	29	14	26	30	1.95
44015451--44015594	28	5.1	27	83	7	164	28	35	13	22	1.92
44015451--44015594	57	2.6	54	81	8	164	28	35	13	22	1.92
44017692--44017799	26	4.2	26	91	0	180	33	7	24	35	1.83
44021239--44021321	30	2.7	30	78	9	80	14	21	1	62	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44021297--44021321	12	2.1	12	100	0	50	8	16	0	76	1.02
44021390--44021446	5	11.0	5	75	20	55	3	17	1	77	1.00
44021390--44021446	16	3.7	14	82	15	60	3	17	1	77	1.00
44021390--44021457	21	3.2	21	76	15	61	2	17	2	76	1.04
44023453--44023607	46	3.3	46	75	12	172	23	20	27	29	1.99
44024614--44024671	10	5.7	10	76	11	64	29	27	13	29	1.94
44024614--44024674	20	3.0	20	83	9	79	27	26	13	32	1.93
44034057--44035235	384	3.1	384	100	0	2358	20	20	20	39	1.92
44035290--44035316	11	2.5	11	100	0	54	18	14	25	40	1.89
44036782--44036819	11	3.4	11	88	3	58	18	5	7	68	1.34
44038484--44038581	30	3.3	30	76	0	97	30	16	25	27	1.96
44050076--44050120	21	2.1	22	91	4	74	37	20	4	37	1.73
44050224--44050277	25	2.2	25	83	6	65	33	22	22	22	1.97
44050257--44050321	24	2.7	24	90	2	94	30	20	33	15	1.93
44052453--44052517	23	2.8	23	88	0	94	43	4	27	24	1.74
44055794--44055831	19	2.0	19	100	0	76	31	31	26	10	1.90
44056948--44057016	23	3.0	23	86	0	93	46	4	26	23	1.71
44060061--44060206	43	3.4	43	73	5	152	32	21	15	29	1.95
44074126--44074159	17	2.0	17	94	0	59	44	50	0	5	1.26
44078765--44078798	17	2.0	17	94	0	59	44	50	0	5	1.26
44081045--44081095	25	2.1	24	92	7	93	41	19	15	21	1.88
44084980--44085076	38	2.6	38	83	3	115	42	30	13	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44085044--44085098	22	2.5	22	93	0	92	43	32	12	10	1.78
44085005--44085121	60	2.0	60	89	3	182	42	30	12	13	1.82
44085336--44085378	17	2.5	17	76	0	50	41	11	2	44	1.53
44089513--44089550	20	1.9	20	89	10	60	63	7	0	28	1.23
44089518--44089559	19	2.2	19	83	8	50	69	7	2	21	1.25
44090096--44090141	18	2.6	18	82	0	56	50	0	2	47	1.13
44100557--44100582	12	2.2	12	100	0	52	23	23	7	46	1.78
44100741--44100799	27	2.2	27	77	11	68	38	25	15	20	1.91
44100876--44100930	24	2.3	24	83	0	65	32	25	27	14	1.95
44102989--44103044	23	2.4	23	84	0	67	35	25	12	26	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276