genome.fa.s12.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  117  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37277805--37277887	31	2.7	31	88	3	125	27	16	26	28	1.97
37280657--37280934	48	5.8	48	75	5	215	30	18	26	24	1.98
37280744--37280926	96	1.9	96	86	2	260	27	18	28	24	1.98
37282549--37282691	47	3.0	47	95	0	259	44	15	17	23	1.86
37282838--37282911	35	2.1	34	95	4	139	40	12	12	35	1.80
37290042--37290354	40	7.8	40	91	2	448	24	21	29	24	1.99
37290042--37290341	162	1.9	160	91	1	492	24	22	29	24	1.99
37294333--37294482	42	3.5	42	81	8	169	28	26	20	25	1.99
37311532--37311566	11	3.0	12	91	4	54	37	8	28	25	1.85
37317996--37318157	43	3.8	42	73	11	125	33	22	16	27	1.96
37317996--37318157	86	1.9	85	81	6	193	33	22	16	27	1.96
37317988--37318144	44	3.6	44	69	12	128	32	23	17	26	1.96
37325670--37325815	43	3.4	42	73	15	138	31	22	18	27	1.97
37329445--37329583	6	22.8	6	78	13	142	47	13	18	20	1.82
37329445--37329583	67	2.1	67	94	0	242	47	13	18	20	1.82
37329701--37329766	27	2.5	26	82	7	78	37	21	22	18	1.94
37329720--37329772	27	2.0	27	85	7	72	35	16	26	20	1.94
37329725--37329782	27	2.1	27	81	6	64	36	25	20	17	1.94
37329907--37329965	22	2.7	22	81	0	64	32	22	25	20	1.98
37330053--37330134	27	3.1	26	85	5	101	36	20	23	19	1.95
37330334--37330530	27	7.3	27	78	4	110	25	19	17	37	1.94
37330334--37330529	54	3.6	54	85	0	257	26	19	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37330336--37330529	81	2.4	81	81	3	221	26	19	17	37	1.93
37330534--37331022	27	18.1	27	83	6	593	39	10	22	26	1.87
37336726--37336910	79	2.3	82	83	7	229	25	27	22	24	2.00
37336707--37336910	40	5.1	40	81	8	229	25	26	22	25	2.00
37341490--37341648	38	4.1	38	85	1	210	20	20	25	33	1.97
37341454--37341648	76	2.5	78	79	3	214	22	20	24	32	1.98
37343207--37343514	43	7.2	43	91	0	436	12	22	32	32	1.91
37346097--37346428	47	7.1	47	91	0	495	31	9	31	27	1.88
37346547--37346625	37	2.1	37	88	0	113	25	18	30	25	1.98
37352075--37352263	38	4.9	38	87	6	229	21	22	26	29	1.99
37360035--37360060	13	2.0	13	100	0	52	15	30	38	15	1.88
37361638--37361673	19	2.0	17	89	10	54	44	0	25	30	1.54
37392687--37392991	40	7.7	40	89	3	420	25	27	21	25	1.99
37401349--37401462	43	2.7	43	80	2	122	29	25	19	25	1.98
37403542--37403737	6	31.8	6	73	14	132	51	13	16	18	1.77
37403554--37403647	37	2.5	37	85	0	134	52	13	14	19	1.75
37403605--37403665	25	2.4	25	88	0	86	52	14	13	19	1.74
37403565--37403733	62	2.7	62	89	0	257	50	14	15	18	1.78
37403627--37403737	37	3.0	37	83	7	129	48	15	17	18	1.81
37403652--37403734	25	3.4	25	83	5	98	48	15	18	18	1.82
37404249--37404410	27	6.0	27	83	2	182	25	19	19	35	1.95
37404254--37404410	81	2.0	80	93	1	269	25	19	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37412660--37412831	46	3.7	46	75	13	172	22	27	20	29	1.98
37416112--37416190	37	2.1	37	90	0	122	25	31	18	24	1.98
37416309--37416694	47	8.1	47	94	1	610	27	30	9	32	1.88
37416531--37416606	22	3.3	22	64	10	62	27	30	11	30	1.92
37421033--37421251	46	4.7	46	84	9	277	22	19	26	30	1.98
37421033--37421249	93	2.4	91	83	9	271	22	19	27	30	1.98
37426967--37427144	27	6.6	27	84	3	205	29	28	15	26	1.96
37426988--37427143	82	1.9	81	88	3	233	29	28	15	26	1.96
37439570--37439672	52	2.0	52	94	0	179	38	9	30	21	1.85
37440102--37440964	46	18.7	46	91	4	1375	23	19	26	30	1.98
37446342--37446727	27	14.3	27	81	1	380	38	20	9	32	1.84
37446342--37446656	54	5.8	54	88	1	452	39	19	8	32	1.83
37446691--37446764	27	2.7	27	77	4	69	39	24	4	32	1.74
37446748--37446998	27	9.3	27	89	0	358	35	19	20	24	1.96
37447482--37447579	27	3.6	27	78	5	90	20	23	20	35	1.96
37447743--37447833	6	14.8	6	69	17	53	21	17	14	46	1.84
37447720--37447822	31	3.3	31	86	1	134	21	16	12	49	1.78
37453268--37453363	47	2.0	49	89	6	151	36	2	18	42	1.62
37453947--37454036	46	2.0	46	97	2	173	33	4	22	40	1.74
37454451--37454620	46	3.7	46	77	12	177	22	17	27	31	1.97
37454445--37454615	93	1.8	93	89	2	272	22	18	28	30	1.97
37457045--37457135	45	2.0	45	93	0	155	24	15	36	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37460542--37460686	40	3.6	40	85	4	193	25	24	26	23	2.00
37468570--37468714	40	3.6	40	85	4	193	25	24	26	23	2.00
37472915--37473062	46	3.2	46	77	12	167	22	20	27	29	1.99
37476690--37476992	40	7.6	40	89	3	389	27	28	20	23	1.99
37483326--37483588	40	6.6	39	86	4	278	25	27	21	25	1.99
37483326--37483588	120	2.2	119	82	4	307	25	27	21	25	1.99
37483520--37483597	40	1.9	41	82	10	97	26	28	20	24	1.99
37496821--37497043	48	4.7	47	73	7	166	24	19	26	29	1.98
37500604--37500775	40	4.3	40	96	1	310	24	20	27	27	1.99
37500604--37500808	80	2.6	80	89	3	272	25	20	27	26	1.99
37505901--37506072	54	3.2	53	81	6	202	36	18	20	23	1.95
37505897--37506072	81	2.2	81	85	1	237	36	18	21	23	1.94
37505900--37506051	27	5.6	27	92	0	241	36	18	22	23	1.95
37507941--37507992	19	2.8	19	82	8	63	65	0	3	30	1.10
37519192--37519360	46	3.7	45	75	15	175	23	18	27	29	1.98
37522138--37522193	15	3.7	15	83	7	78	14	16	8	60	1.57
37524586--37524761	46	3.8	45	81	10	212	21	21	29	28	1.98
37524582--37524753	93	1.8	93	94	0	308	20	21	30	27	1.98
37531559--37531621	25	2.5	25	92	0	99	15	15	23	44	1.86
37534414--37534479	34	1.9	34	96	0	123	46	9	18	25	1.78
37542808--37543025	40	5.5	40	92	2	343	24	27	23	23	2.00
37557882--37557927	24	1.9	24	86	0	65	17	17	19	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37562277--37562319	23	1.9	22	85	4	59	51	27	0	20	1.48
37563136--37563253	43	2.8	42	78	11	123	29	24	18	27	1.98
37565017--37565071	19	2.9	19	78	7	67	40	21	5	32	1.76
37565262--37565314	24	2.2	24	86	3	72	37	18	20	22	1.94
37567736--37567926	65	2.9	67	78	7	174	28	19	16	35	1.93
37567803--37567934	65	2.0	67	85	4	178	25	18	16	39	1.91
37567805--37567950	65	2.2	65	82	3	175	26	18	15	39	1.90
37567805--37567992	68	2.8	67	79	7	168	26	19	15	38	1.92
37569655--37569688	6	5.7	6	92	0	59	17	26	0	55	1.42
37569655--37569689	18	1.9	18	100	0	70	17	25	0	57	1.40
37574822--37574976	42	3.7	42	82	3	186	30	15	25	28	1.96
37581465--37581551	38	2.3	38	95	0	156	27	16	25	31	1.96
37583096--37583271	46	3.8	46	77	10	187	22	21	27	28	1.99
37583093--37583264	93	1.8	93	92	0	290	23	21	27	27	1.99
37585663--37585771	56	1.9	56	94	0	191	25	24	26	22	2.00
37590690--37590865	46	3.8	46	77	10	187	22	21	27	28	1.99
37590687--37590858	93	1.8	93	92	0	290	23	21	27	27	1.99
37598241--37598416	46	3.8	46	76	12	198	21	20	28	29	1.98
37598238--37598409	93	1.8	93	94	0	308	21	20	29	28	1.98
37600067--37600288	40	5.5	40	82	2	257	25	24	26	23	2.00
37600067--37600318	80	3.2	80	81	3	276	25	23	25	24	2.00
37600067--37600285	120	1.8	121	83	6	293	25	24	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37604357--37604509	28	5.5	28	91	1	227	33	26	12	27	1.92
37612515--37612724	28	7.5	28	94	0	350	33	28	11	26	1.92
37622072--37622339	135	2.0	135	96	0	491	27	15	29	28	1.96
37626917--37627101	79	2.3	81	83	7	227	24	22	27	24	2.00
37626918--37627101	40	4.6	40	82	9	207	25	22	27	24	2.00
37626970--37627134	79	2.1	79	83	6	201	26	21	27	24	1.99
37627214--37627614	200	2.0	200	97	0	757	27	13	22	36	1.92
37634045--37634096	16	3.3	16	83	2	61	48	21	21	9	1.78
37641804--37641850	16	2.9	16	84	6	60	46	19	21	12	1.82
37642072--37642170	29	3.4	29	87	6	139	26	17	29	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276