genome.fa.s12.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  192  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63478920--63479293	193	1.9	193	87	0	541	35	22	14	28	1.93
63481054--63481078	13	1.9	13	100	0	50	32	4	24	40	1.73
63482192--63482355	43	3.8	44	75	12	171	25	16	27	30	1.97
63490333--63490648	157	2.0	157	99	0	623	31	5	20	42	1.75
63495937--63496199	47	5.6	44	72	15	183	28	19	29	22	1.98
63502515--63502543	15	1.9	15	100	0	58	65	0	0	34	0.93
63513279--63513310	16	2.0	16	93	0	55	25	3	12	59	1.48
63514299--63514358	27	2.2	28	84	3	77	38	25	20	16	1.93
63521424--63521463	19	2.1	19	90	0	62	45	12	7	35	1.70
63532907--63533096	46	4.1	45	73	13	156	30	20	26	22	1.98
63540585--63540804	46	4.8	45	78	10	182	28	20	29	21	1.98
63544756--63544795	21	2.0	20	85	5	53	12	37	27	22	1.90
63552375--63552552	27	6.6	27	83	3	205	26	15	28	29	1.96
63552376--63552531	82	1.9	81	88	3	233	26	15	28	29	1.96
63552372--63552552	82	2.2	81	83	2	229	27	15	27	29	1.96
63560564--63560741	27	6.6	27	83	3	205	26	15	28	29	1.96
63560565--63560720	82	1.9	81	88	3	233	26	15	28	29	1.96
63560561--63560741	82	2.2	81	83	2	229	27	15	27	29	1.96
63563375--63563467	45	2.1	45	85	0	123	26	9	12	50	1.71
63566045--63566193	44	3.5	42	82	9	135	24	17	26	30	1.97
63566045--63566201	43	3.7	42	77	13	160	24	17	27	31	1.97
63566921--63566961	20	1.9	22	85	14	59	26	2	26	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63570265--63570630	47	7.7	47	92	1	563	32	8	29	28	1.87
63570286--63570630	190	1.8	190	91	0	573	33	8	29	28	1.87
63571323--63571699	40	9.3	40	89	2	538	25	19	27	27	1.99
63571323--63571699	205	1.8	205	91	1	621	25	19	27	27	1.99
63571727--63571894	57	2.9	57	88	0	237	22	17	29	30	1.97
63571759--63571860	29	3.6	29	77	7	100	22	16	31	29	1.96
63571731--63571887	28	5.5	28	75	6	127	21	18	29	30	1.97
63586054--63586182	43	3.0	43	83	1	143	25	20	30	24	1.98
63586116--63586262	40	3.6	41	75	5	136	27	21	27	23	1.99
63590743--63590905	46	3.5	46	85	7	199	28	18	30	22	1.97
63593303--63593336	10	3.5	10	88	8	52	76	0	0	23	0.79
63593901--63593943	21	2.0	21	100	0	86	32	9	13	44	1.76
63594221--63594305	31	2.8	30	73	5	91	43	11	10	34	1.76
63594489--63594533	23	2.0	23	95	0	81	35	6	8	48	1.61
63595295--63595356	31	2.0	32	87	3	90	29	12	14	43	1.83
63597951--63598173	40	5.6	39	81	8	218	26	21	27	24	2.00
63598031--63598208	79	2.2	80	82	3	200	25	22	28	23	1.99
63600348--63600402	28	2.0	28	85	7	76	20	38	21	20	1.94
63618942--63619057	45	2.6	45	81	2	153	33	27	13	25	1.94
63621733--63621841	43	2.6	41	80	13	116	28	24	21	25	1.99
63635774--63635844	21	3.4	21	92	0	124	14	28	36	21	1.92
63636384--63636424	21	2.0	21	100	0	82	29	19	9	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63644807--63645135	47	6.9	47	95	0	532	32	7	30	29	1.86
63645254--63645332	37	2.1	37	90	0	122	24	18	31	25	1.98
63650534--63650659	39	3.2	39	85	0	144	23	26	22	27	1.99
63652309--63652390	41	2.0	41	97	0	155	32	26	18	21	1.97
63662936--63663065	39	3.3	39	91	0	197	22	28	22	26	1.99
63688959--63688995	18	2.1	18	100	0	74	35	5	32	27	1.79
63689588--63689614	11	2.5	11	100	0	54	29	0	18	51	1.46
63690831--63690898	21	3.2	21	70	25	61	20	11	26	41	1.87
63702821--63702880	27	2.3	26	85	2	75	38	18	21	21	1.94
63702895--63703054	66	2.4	66	100	0	320	29	24	29	16	1.97
63706541--63706572	14	2.4	13	90	10	55	18	6	12	62	1.50
63721542--63721687	27	5.4	27	87	0	202	25	21	19	34	1.96
63725540--63725627	45	1.9	46	83	2	115	23	23	14	37	1.92
63726656--63726687	15	2.0	17	88	11	50	43	31	0	25	1.55
63732180--63732211	11	2.9	11	90	0	55	18	6	3	71	1.20
63735626--63735677	19	2.8	17	78	16	59	11	19	3	65	1.40
63735626--63735684	19	3.1	18	75	18	57	11	18	3	66	1.38
63739440--63739593	42	3.6	42	75	6	150	28	24	15	31	1.95
63740846--63741008	42	3.9	42	88	4	233	20	16	26	36	1.94
63740846--63740999	83	1.8	84	88	4	240	21	16	25	35	1.95
63742188--63742243	21	2.7	21	76	13	62	35	0	14	50	1.43
63746936--63747000	32	2.0	32	100	0	130	38	18	21	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63748678--63748827	41	3.6	42	83	7	191	20	18	26	35	1.95
63749832--63749857	12	2.2	12	100	0	52	42	0	7	50	1.31
63755950--63756103	42	3.6	42	79	5	159	29	23	16	31	1.96
63768240--63768279	16	2.5	16	95	0	71	40	22	30	7	1.81
63768498--63768667	29	5.9	29	83	2	173	28	13	30	27	1.94
63768503--63768667	87	1.9	86	82	6	208	29	13	29	27	1.95
63773437--63773469	17	2.1	17	88	11	52	45	36	0	18	1.49
63778782--63778813	16	2.0	16	93	0	55	34	18	0	46	1.49
63779026--63779554	50	10.5	50	72	7	363	31	25	16	26	1.97
63779069--63779555	101	4.8	100	73	8	378	31	25	17	26	1.97
63779018--63779561	151	3.6	151	89	1	820	31	25	17	26	1.97
63779910--63779956	19	2.3	20	82	10	60	48	14	0	36	1.44
63783235--63783296	28	2.2	28	85	0	79	35	22	16	25	1.94
63783498--63783524	12	2.2	12	100	0	54	59	7	7	25	1.51
63787765--63787789	13	1.9	13	100	0	50	32	0	4	64	1.12
63791154--63791303	67	2.2	67	81	8	171	32	17	28	21	1.96
63791178--63791361	67	2.8	64	77	8	194	29	17	29	22	1.97
63793784--63793890	35	3.1	35	90	0	124	29	11	23	35	1.90
63793796--63793971	35	5.1	35	86	3	230	28	13	22	35	1.92
63796464--63796514	24	2.1	25	92	3	86	43	0	13	43	1.44
63796468--63796523	25	2.2	25	84	6	69	41	0	12	46	1.42
63796524--63796578	14	3.9	14	82	0	65	25	0	30	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63796644--63796697	21	2.5	22	78	3	65	22	0	40	37	1.54
63796644--63796754	14	7.6	14	70	9	53	23	1	38	36	1.66
63796732--63796800	7	9.7	7	76	9	59	20	0	36	43	1.52
63797198--63797315	62	1.9	62	82	3	148	39	11	22	26	1.88
63797119--63797396	135	2.0	137	86	5	380	37	12	21	28	1.91
63797257--63797503	81	3.0	81	82	6	327	34	11	23	30	1.90
63798474--63798542	35	2.0	35	97	0	129	26	17	27	28	1.97
63801715--63801980	9	30.1	9	71	10	106	46	17	1	35	1.56
63801715--63801886	33	5.3	33	72	10	131	48	15	1	34	1.56
63801758--63801972	50	4.4	51	75	14	200	46	16	1	36	1.56
63801715--63801962	94	2.6	94	88	3	358	45	16	1	35	1.56
63801699--63801963	43	6.0	44	73	14	219	46	16	1	36	1.54
63807192--63807267	21	3.6	21	87	0	107	28	14	50	6	1.68
63807510--63807575	31	2.1	31	88	0	96	16	10	19	53	1.72
63816154--63816315	41	3.9	41	77	9	159	22	22	27	27	1.99
63821403--63821568	42	3.9	42	79	3	172	30	24	15	30	1.95
63828874--63828985	43	2.6	42	79	10	129	27	17	26	27	1.98
63830968--63831119	42	3.5	42	80	6	162	30	25	17	25	1.97
63832470--63832514	22	2.0	22	95	0	81	44	0	20	35	1.51
63847442--63847484	16	2.7	16	88	0	68	48	18	23	9	1.76
63847442--63847484	8	5.4	8	80	0	50	48	18	23	9	1.76
63847695--63847755	29	2.1	29	93	3	106	27	14	29	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63847710--63847786	29	2.7	29	83	0	91	29	16	28	24	1.97
63849158--63849335	27	6.6	27	84	3	205	29	28	15	26	1.96
63849179--63849334	82	1.9	81	88	3	233	29	28	15	26	1.96
63857222--63857453	27	8.6	27	87	2	304	29	28	15	26	1.96
63857222--63857453	109	2.1	108	86	2	313	29	28	15	26	1.96
63863866--63863947	42	1.9	43	87	2	121	26	13	28	31	1.94
63863867--63863985	43	2.8	42	79	2	121	28	15	25	30	1.96
63866881--63866971	46	2.0	46	86	0	128	34	6	31	27	1.83
63880656--63880793	51	2.7	50	78	6	161	23	14	23	38	1.92
63880651--63880810	25	6.4	23	70	13	88	24	13	24	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276