genome.fa.s12.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  142  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46278155--46278329	49	3.5	49	81	3	224	26	17	25	30	1.97
46278150--46278337	100	1.9	100	94	0	331	26	18	24	30	1.98
46280868--46280916	24	2.0	26	84	8	66	40	16	2	40	1.60
46280914--46280938	2	12.5	2	100	0	50	52	0	0	48	1.00
46283901--46283982	22	3.7	22	96	0	146	35	32	19	12	1.89
46285420--46285471	8	6.4	8	84	4	68	25	0	1	73	0.94
46285420--46285488	33	2.1	33	83	0	84	34	0	1	63	1.03
46285727--46285789	30	2.1	29	88	2	90	17	6	11	65	1.45
46286704--46286770	34	2.0	34	82	11	84	40	1	16	41	1.57
46286751--46286797	22	2.1	22	96	0	85	51	0	10	38	1.37
46286790--46286856	34	2.0	34	85	5	91	38	1	17	41	1.59
46286837--46286889	22	2.4	22	87	0	70	43	0	16	39	1.49
46286704--46286952	86	2.9	85	90	2	390	39	1	16	42	1.56
46286732--46287441	229	3.1	226	84	6	897	38	1	18	40	1.62
46286991--46287032	22	1.9	22	90	0	66	50	7	11	30	1.66
46286816--46287095	143	2.0	144	89	2	429	38	2	18	41	1.62
46287020--46287085	34	1.9	34	84	6	89	36	1	21	40	1.62
46286962--46287267	86	3.6	86	93	0	488	39	2	17	39	1.64
46287066--46287204	22	6.4	22	71	12	99	41	1	17	39	1.58
46287105--46287171	34	2.0	34	85	5	91	38	1	17	41	1.59
46287175--46287333	65	2.5	66	81	8	191	35	2	22	39	1.67
46287216--46287331	30	3.7	30	69	15	90	34	2	23	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46287089--46287423	150	2.2	148	87	6	478	36	2	20	40	1.64
46287332--46287406	34	2.2	34	78	4	80	40	1	17	41	1.58
46287366--46287441	30	2.6	28	79	4	80	35	2	22	39	1.68
46287325--46287441	28	3.9	30	69	14	89	36	1	20	41	1.63
46287558--46287752	94	2.1	94	92	0	318	41	13	15	28	1.86
46287662--46287954	125	2.3	126	92	0	489	37	18	15	29	1.91
46289228--46289261	15	2.4	14	90	9	52	29	8	11	50	1.69
46292035--46292074	18	2.2	18	86	8	55	47	0	15	37	1.45
46292421--46292467	24	2.0	22	84	8	58	44	4	14	36	1.65
46298668--46298939	47	5.7	47	77	4	219	24	29	18	28	1.98
46301359--46301417	30	2.0	30	89	0	91	11	11	44	32	1.78
46301923--46301953	14	2.2	14	94	0	53	61	12	0	25	1.32
46302893--46303004	54	2.1	54	87	0	161	58	2	6	32	1.37
46303162--46303205	21	2.1	21	82	0	52	38	2	25	34	1.68
46304583--46304645	32	2.0	32	84	6	83	47	1	4	46	1.33
46309432--46309561	60	2.2	60	83	2	154	35	11	21	31	1.89
46310938--46310976	17	2.4	17	83	8	55	51	0	2	46	1.14
46311057--46311097	22	2.0	22	90	9	68	48	4	4	41	1.46
46311224--46311347	3	41.3	3	100	0	248	0	33	0	66	0.92
46311781--46311810	14	2.1	14	93	0	51	50	3	0	46	1.18
46313140--46313236	42	2.3	42	89	0	140	30	11	25	31	1.91
46320411--46320504	42	2.2	42	90	3	145	31	12	23	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46322114--46322271	46	3.5	46	86	4	203	18	20	15	45	1.85
46322201--46322336	72	1.9	72	98	0	263	17	22	13	45	1.84
46322157--46322382	118	1.9	118	96	1	418	17	22	14	45	1.85
46322273--46322421	46	3.2	46	100	0	298	17	24	15	42	1.87
46328362--46328442	38	2.1	38	93	0	135	22	22	23	32	1.98
46335968--46336062	46	2.1	46	95	0	172	32	10	26	30	1.90
46339102--46339189	40	2.2	40	89	2	133	25	21	28	25	1.99
46339426--46339467	22	1.9	22	85	9	59	33	9	14	42	1.78
46342444--46342514	24	2.9	25	81	8	76	21	28	14	36	1.92
46342644--46342760	25	4.8	25	69	6	78	17	27	22	32	1.97
46345333--46345389	26	2.1	27	81	15	66	12	7	10	70	1.34
46350356--46350419	32	2.1	30	88	5	92	54	7	3	34	1.45
46351549--46351682	42	3.2	42	80	7	155	37	24	17	20	1.94
46352080--46352129	12	4.0	13	78	14	52	0	10	8	82	0.86
46364653--46364736	31	2.8	31	94	3	145	28	26	16	28	1.97
46364964--46365050	25	3.5	25	91	0	138	25	24	22	27	2.00
46364956--46365050	50	1.9	50	91	0	154	26	23	23	27	2.00
46365867--46365923	27	2.1	27	87	6	80	21	24	22	31	1.98
46365988--46366159	27	6.3	27	79	10	118	29	8	20	40	1.83
46365964--46366145	54	3.3	55	75	12	153	29	9	20	41	1.83
46366139--46366292	27	5.7	27	82	7	188	40	8	21	29	1.82
46366122--46366305	81	2.3	80	80	7	219	38	8	21	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46366137--46366292	54	2.9	54	86	1	233	40	8	22	28	1.83
46367492--46367545	3	17.7	3	84	3	54	55	0	5	38	1.23
46370896--46370920	13	1.9	13	100	0	50	32	4	24	40	1.73
46380843--46381012	85	2.0	84	89	1	259	43	14	21	20	1.86
46381973--46381999	13	2.1	13	100	0	54	14	37	33	14	1.88
46397960--46398125	46	3.6	46	75	13	180	28	28	20	22	1.98
46399561--46399652	48	1.9	48	88	0	139	29	26	21	22	1.99
46401093--46401180	46	2.0	43	84	8	115	36	12	11	39	1.79
46401969--46402007	20	2.0	20	94	0	69	5	17	25	51	1.66
46402526--46402891	91	4.0	91	98	0	696	32	7	20	39	1.81
46404528--46404584	17	3.6	17	66	24	52	40	5	5	49	1.48
46405561--46406174	116	5.3	116	95	0	1023	41	2	8	47	1.48
46416586--46416623	7	5.4	7	90	0	58	18	0	39	42	1.50
46416660--46416691	15	2.1	15	94	0	55	65	0	6	28	1.16
46419069--46419146	39	2.0	39	94	0	138	23	10	15	51	1.73
46419074--46419137	20	3.2	20	65	20	53	21	9	15	53	1.70
46422281--46422435	26	6.0	26	93	0	265	34	23	7	33	1.84
46422281--46422435	52	3.0	52	98	0	292	34	23	7	33	1.84
46427829--46427857	14	2.1	14	93	6	51	34	0	10	55	1.34
46432926--46432976	25	2.0	25	88	0	75	41	5	15	37	1.72
46435151--46435201	25	2.0	25	92	0	84	39	5	17	37	1.74
46435154--46435201	12	3.9	12	75	5	51	39	4	18	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46439344--46439485	75	1.9	74	85	7	198	22	9	14	54	1.68
46447610--46447650	20	2.0	20	85	4	55	60	4	4	29	1.38
46453548--46453596	22	2.2	22	96	0	89	38	34	8	18	1.80
46453824--46454042	27	8.1	27	83	12	290	33	22	25	18	1.97
46453829--46454045	54	4.0	54	99	0	427	33	22	25	18	1.97
46455666--46455773	26	4.2	26	93	0	189	36	24	7	32	1.83
46457774--46457831	29	2.0	29	96	0	107	24	20	15	39	1.91
46458225--46458272	20	2.4	20	75	0	51	31	6	37	25	1.81
46459281--46459320	9	4.4	9	84	12	55	20	0	2	77	0.88
46466854--46466909	26	2.2	26	100	0	112	48	14	7	30	1.70
46479189--46479296	26	4.2	26	91	0	180	32	7	23	37	1.82
46497760--46497798	18	2.2	19	86	9	55	23	25	30	20	1.98
46503887--46503912	2	13.0	2	100	0	52	50	0	0	50	1.00
46506787--46506916	42	3.1	43	81	6	131	26	13	26	33	1.94
46507496--46507534	20	1.9	20	84	5	51	25	2	17	53	1.56
46509872--46509993	42	3.0	41	76	9	140	16	24	18	40	1.91
46509882--46510022	42	3.4	41	75	15	121	17	24	19	38	1.93
46516246--46516298	26	2.0	26	82	7	63	26	15	20	37	1.92
46517784--46517891	26	4.2	26	87	2	155	37	23	7	32	1.82
46517784--46517891	52	2.1	52	91	0	171	37	23	7	32	1.82
46519367--46519440	37	2.0	37	100	0	148	48	8	16	27	1.74
46520470--46520501	14	2.4	13	90	10	55	62	12	6	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46522158--46522312	37	4.2	37	86	6	183	19	10	28	41	1.84
46530119--46530151	11	3.0	11	83	16	50	81	0	0	18	0.68
46530120--46530149	16	1.9	16	93	6	53	83	0	0	16	0.65
46530347--46530393	23	2.0	23	87	8	67	27	8	27	36	1.86
46531656--46531709	11	4.9	11	79	6	56	61	29	7	1	1.34
46531871--46531901	9	3.4	9	95	0	53	16	41	9	32	1.80
46537012--46537125	57	2.0	57	100	0	228	19	3	19	57	1.54
46542082--46542116	6	5.8	6	100	0	70	0	17	0	82	0.66
46542431--46542625	96	2.0	97	83	3	241	32	16	14	35	1.90
46548778--46549309	53	9.9	54	83	6	595	38	19	10	31	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276