genome.fa.s12.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  115  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36557500--36557551	21	2.4	22	87	3	70	15	26	44	13	1.84
36561841--36562370	42	12.6	42	86	0	630	21	17	23	37	1.94
36567049--36567074	3	8.7	3	100	0	52	69	0	0	30	0.89
36570764--36570794	15	2.1	15	93	0	53	19	0	3	77	0.90
36572571--36572641	25	2.8	25	95	0	124	26	22	25	25	2.00
36572688--36572726	10	3.8	10	93	6	69	30	17	17	33	1.94
36572688--36572727	21	1.9	21	100	0	80	30	17	17	35	1.93
36576346--36576416	25	2.9	25	91	2	117	28	19	23	28	1.99
36576462--36576502	21	2.0	21	90	0	64	34	12	17	36	1.87
36578508--36578563	18	3.2	18	79	20	73	7	30	0	62	1.22
36579864--36580127	85	3.1	85	98	0	510	37	8	27	27	1.85
36581392--36581559	47	3.6	47	91	3	266	33	7	29	29	1.85
36583459--36583517	26	2.3	25	80	13	66	35	25	10	28	1.89
36583624--36583712	28	3.2	28	91	1	144	16	25	21	35	1.94
36587108--36587178	35	2.0	35	100	0	142	30	22	5	40	1.77
36597324--36597394	33	2.2	33	84	5	90	33	9	11	45	1.73
36598924--36599081	70	2.2	70	79	3	174	42	17	9	31	1.81
36599026--36599124	35	2.8	35	78	0	108	43	22	10	24	1.83
36606446--36606473	13	2.2	13	100	0	56	46	25	21	7	1.76
36606714--36606849	70	1.9	70	81	0	164	41	18	10	29	1.83
36615784--36615981	39	5.1	39	92	0	315	26	20	23	29	1.99
36624924--36624981	30	1.9	30	100	0	116	20	39	27	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36625617--36625681	31	2.0	33	82	5	80	38	0	3	58	1.14
36625657--36625684	10	2.8	10	100	0	56	28	0	0	71	0.86
36627341--36627444	33	3.2	32	85	6	138	37	13	23	25	1.91
36627449--36627554	31	3.5	31	85	2	142	28	16	25	29	1.97
36627651--36627702	27	1.9	27	88	0	77	38	11	25	25	1.89
36630226--36630278	27	2.0	27	85	3	72	28	11	20	39	1.87
36631551--36631696	48	3.0	49	84	8	194	38	6	23	30	1.81
36634018--36634116	47	2.1	49	96	3	184	45	6	22	26	1.75
36634740--36634782	23	1.9	22	86	13	61	53	0	6	39	1.28
36635902--36635981	33	2.5	32	79	2	97	38	12	22	26	1.90
36635999--36636145	31	4.7	31	84	3	188	30	16	23	29	1.96
36635998--36636145	62	2.4	62	87	2	208	30	16	24	29	1.96
36636235--36636286	27	1.9	27	92	0	86	38	13	25	23	1.91
36636238--36636296	27	2.2	27	84	6	75	42	15	22	20	1.89
36638102--36638223	46	2.7	45	83	6	140	22	28	19	28	1.98
36639086--36639193	56	1.9	56	90	0	171	31	19	11	37	1.87
36648770--36649770	48	20.9	48	95	0	1750	36	6	26	30	1.82
36649911--36650013	37	2.8	37	93	0	179	24	20	31	24	1.98
36655983--36656018	18	2.0	18	89	10	56	38	27	5	27	1.79
36658264--36658340	38	2.0	38	97	0	145	32	27	5	35	1.79
36663615--36663737	47	2.6	47	81	11	137	24	31	17	26	1.97
36665323--36665472	67	2.2	67	81	8	171	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36665347--36665530	67	2.8	64	77	8	194	29	17	29	22	1.97
36669794--36669977	67	2.8	64	76	8	185	29	16	29	23	1.97
36671768--36671899	47	2.8	46	84	4	174	23	31	18	25	1.98
36686155--36686231	40	1.9	40	82	10	95	11	10	12	64	1.49
36688047--36688185	41	3.4	41	85	3	181	41	18	17	22	1.90
36692984--36693071	40	2.2	40	88	6	126	25	23	28	22	1.99
36704203--36704272	27	2.6	27	95	2	113	31	28	12	27	1.93
36704203--36704300	28	3.5	28	90	2	135	31	28	13	26	1.94
36716908--36717084	40	4.4	40	85	4	234	25	27	22	23	2.00
36724943--36725079	40	3.5	40	81	6	163	26	27	22	24	2.00
36727272--36727449	27	6.6	27	84	3	205	29	28	15	26	1.96
36727293--36727448	82	1.9	81	88	3	233	29	28	15	26	1.96
36729224--36729304	41	2.0	41	97	0	153	28	24	13	33	1.93
36729724--36729816	47	2.0	47	97	0	177	19	22	9	48	1.78
36732751--36732947	27	7.3	27	88	0	268	29	24	6	38	1.81
36732751--36732947	54	3.6	54	92	0	295	29	24	6	38	1.81
36732978--36733101	27	4.6	26	87	6	176	43	20	6	29	1.77
36732978--36733128	27	5.6	27	82	6	173	43	21	6	28	1.77
36732978--36733127	81	1.9	81	84	8	207	44	20	6	28	1.77
36733084--36733191	27	3.9	27	77	13	103	41	18	8	31	1.80
36733232--36733309	27	2.9	27	77	11	88	35	21	20	21	1.96
36734111--36734284	52	3.4	52	88	3	273	27	21	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36734111--36734284	26	6.8	26	85	2	219	27	21	22	28	1.99
36734429--36734520	42	2.2	42	92	0	148	29	14	21	34	1.93
36734544--36734622	31	2.5	31	100	0	158	27	18	26	26	1.98
36749698--36749849	43	3.5	43	76	15	152	34	25	15	24	1.95
36752417--36752573	39	4.0	39	93	0	260	26	30	22	21	1.98
36767041--36767081	20	2.0	21	90	4	66	12	14	2	70	1.26
36769130--36769187	30	1.9	30	89	0	89	22	34	27	15	1.94
36769461--36769502	11	3.9	11	87	3	59	23	9	11	54	1.66
36771699--36771773	28	2.7	26	79	8	78	36	17	22	24	1.95
36772699--36772741	9	4.8	9	91	0	68	25	9	27	37	1.87
36772901--36772925	12	2.1	12	100	0	50	16	24	36	24	1.94
36776667--36776707	19	2.2	19	86	4	57	26	21	36	14	1.93
36776776--36776886	56	2.0	56	82	3	134	30	15	29	24	1.95
36780481--36780564	31	2.7	31	96	1	152	27	27	17	27	1.98
36780588--36780679	42	2.2	42	94	0	157	34	20	14	30	1.92
36780827--36780896	25	2.8	26	82	4	81	24	24	27	24	2.00
36781818--36781869	27	1.9	27	88	7	79	34	11	13	40	1.81
36781909--36782064	54	2.9	54	82	3	172	29	11	19	39	1.87
36781909--36782064	81	1.9	81	82	7	192	29	11	19	39	1.87
36781909--36782064	27	5.8	27	81	6	147	29	11	19	39	1.87
36782063--36782260	27	7.3	27	91	0	297	37	8	25	27	1.85
36782063--36782260	81	2.4	81	94	0	333	37	8	25	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36809927--36810083	43	3.7	43	80	12	153	31	25	18	24	1.97
36812075--36812138	13	4.5	14	70	16	51	59	4	1	34	1.28
36816419--36816468	25	2.0	25	96	0	91	32	18	4	46	1.67
36827745--36827774	12	2.5	12	94	0	51	30	16	40	13	1.87
36831843--36831997	85	1.8	84	87	1	229	32	13	25	29	1.94
36831832--36831991	42	3.8	42	80	4	169	31	13	25	29	1.93
36835870--36835956	43	2.0	43	93	0	147	28	16	24	31	1.96
36835870--36836020	43	3.5	43	81	7	146	30	15	22	31	1.95
36847568--36847852	48	5.9	48	76	5	256	27	26	17	28	1.98
36847588--36847854	143	1.9	145	86	4	389	28	26	16	28	1.97
36855392--36855618	48	4.7	47	76	5	204	29	26	17	26	1.98
36855392--36855620	96	2.4	96	79	4	239	29	26	17	26	1.98
36859276--36859439	42	3.9	42	84	6	206	31	16	25	26	1.96
36859276--36859439	85	1.9	84	86	1	229	31	16	25	26	1.96
36871902--36871961	26	2.3	27	83	11	79	38	21	21	18	1.94
36871951--36872146	40	4.9	40	85	0	266	39	26	20	13	1.90
36871978--36872146	20	8.4	20	89	0	257	40	26	19	14	1.89
36872148--36872218	36	2.0	36	91	0	115	18	32	22	26	1.97
36880148--36880250	53	1.9	53	94	0	179	27	20	18	33	1.96
36891458--36891635	27	6.6	27	83	3	205	26	15	28	29	1.96
36891459--36891614	82	1.9	81	88	3	233	26	15	28	29	1.96
36891455--36891635	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36894321--36894356	9	4.0	9	86	13	56	77	0	22	0	0.76
36894321--36894361	5	8.6	5	86	13	52	75	0	24	0	0.80
36894324--36894361	18	2.1	19	95	5	69	76	0	23	0	0.79
36894321--36894356	13	2.7	13	95	4	63	77	0	22	0	0.76
36896035--36896079	23	1.9	22	86	13	63	20	13	28	37	1.90
36902306--36902344	20	2.0	20	89	0	60	25	25	0	48	1.51
36906068--36906432	27	13.6	27	82	7	422	39	19	9	31	1.83
36906068--36906496	81	5.3	80	81	4	470	38	20	8	31	1.84
36906481--36906820	27	12.2	27	73	9	191	37	19	17	25	1.93
36906488--36906803	54	5.7	54	81	7	299	37	20	17	24	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276