genome.fa.s12.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  116  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36906488--36906817	81	4.0	81	78	10	315	37	19	17	24	1.93
36906538--36906767	118	1.9	118	86	1	327	37	20	16	24	1.94
36906530--36906793	145	1.8	145	85	3	379	38	20	17	24	1.93
36906656--36906821	27	6.1	27	85	5	210	39	21	15	24	1.91
36907045--36907127	27	3.1	27	92	1	141	18	22	22	36	1.95
36907218--36907336	58	2.1	58	88	0	175	21	17	28	31	1.96
36907425--36907505	27	3.0	27	82	5	85	17	20	22	39	1.92
36908774--36908893	20	6.0	20	70	7	91	38	19	31	10	1.86
36909970--36910008	20	2.0	20	85	5	53	17	10	0	71	1.12
36911766--36911835	35	2.0	35	85	2	95	37	20	12	30	1.90
36912434--36912677	125	2.0	125	92	1	409	24	28	19	27	1.99
36913543--36913742	57	3.5	57	86	5	244	32	18	18	31	1.95
36914283--36914326	20	2.2	20	84	4	54	34	11	0	54	1.36
36923667--36923804	57	2.4	57	92	0	222	31	17	20	30	1.95
36924656--36924955	159	1.9	159	98	0	582	29	23	16	30	1.96
36929330--36929486	40	3.9	40	84	6	203	23	28	20	28	1.99
36929299--36929486	80	2.3	80	86	4	254	22	27	20	28	1.99
36929782--36929853	29	2.5	29	86	4	92	27	31	13	26	1.94
36929835--36930711	43	20.4	43	99	0	1709	27	34	14	23	1.94
36930903--36931003	50	2.0	50	96	0	184	36	27	3	31	1.75
36931665--36931865	100	2.0	100	99	0	393	30	22	16	29	1.96
36932710--36932973	40	6.7	40	89	5	360	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36945167--36945196	16	1.9	16	93	6	53	36	20	6	36	1.79
36947209--36947388	48	3.8	48	87	0	261	27	29	16	26	1.97
36947537--36947598	30	2.1	29	96	3	115	54	9	8	27	1.61
36949751--36949808	28	2.2	26	84	6	71	43	1	3	51	1.28
36951397--36951525	40	3.2	40	87	3	181	27	27	20	24	1.99
36967732--36967888	43	3.7	43	73	15	153	26	18	27	27	1.98
36982187--36982264	39	2.0	39	97	0	147	30	16	25	26	1.97
36988012--36988115	27	3.9	26	87	5	136	19	23	22	35	1.96
36991482--36991534	25	2.1	25	96	0	97	47	22	1	28	1.62
36998692--36998813	48	2.5	48	82	2	129	27	18	27	26	1.98
37005492--37005556	4	15.8	4	73	23	55	69	0	30	0	0.89
37005492--37005561	24	2.9	23	85	14	88	68	0	31	0	0.90
37005491--37005556	9	7.9	9	74	20	63	68	0	31	0	0.90
37007621--37007686	33	2.0	33	87	0	96	33	15	15	36	1.88
37008181--37008214	17	2.0	17	94	0	59	14	23	35	26	1.94
37019066--37019165	29	3.5	27	77	9	85	26	33	15	26	1.95
37019246--37019292	19	2.5	19	86	3	60	19	34	14	31	1.92
37020733--37020811	37	2.1	37	88	4	115	25	30	18	25	1.98
37020930--37021445	47	10.9	47	95	0	888	27	30	10	31	1.89
37021785--37021930	74	2.0	74	94	2	258	30	16	11	41	1.84
37024390--37024442	16	3.4	16	75	15	56	9	26	16	47	1.77
37025652--37025682	16	1.9	16	93	0	53	16	6	25	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37026186--37026218	17	2.0	17	88	5	50	33	18	15	33	1.92
37027451--37027536	34	2.5	35	75	7	97	27	23	22	26	1.99
37032185--37032222	7	5.9	7	82	17	55	44	0	0	55	0.99
37032191--37032224	9	3.8	9	85	14	52	44	0	0	55	0.99
37033756--37033797	16	2.5	17	81	14	52	45	0	4	50	1.23
37035563--37035609	24	2.0	24	92	8	80	59	0	0	40	0.97
37041096--37041215	58	2.1	57	80	3	132	29	16	5	48	1.70
37042667--37042778	37	3.0	37	82	0	134	29	16	15	38	1.90
37042826--37042854	13	2.2	13	100	0	58	31	6	37	24	1.82
37069541--37069616	39	1.9	39	91	0	125	25	9	26	39	1.85
37069718--37069804	29	3.0	29	81	8	104	22	13	11	51	1.73
37069720--37069823	29	3.6	29	76	7	95	24	12	12	50	1.74
37073897--37073962	28	2.3	29	81	2	71	31	21	3	43	1.67
37076824--37076923	30	3.3	30	78	8	121	49	4	2	45	1.32
37076853--37076969	31	3.8	30	73	13	112	51	5	2	41	1.38
37076824--37076967	61	2.4	60	91	2	225	50	4	2	43	1.35
37078003--37078075	35	2.1	35	92	5	121	34	16	15	34	1.90
37081904--37081970	20	3.3	20	85	4	91	34	13	19	32	1.91
37082019--37082091	26	2.8	26	89	8	121	26	24	23	26	2.00
37082318--37082381	31	2.1	31	93	0	110	39	17	20	23	1.92
37089993--37090059	20	3.3	20	89	4	100	34	11	19	34	1.88
37090109--37090182	27	2.8	27	95	2	132	28	24	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37090409--37090472	31	2.1	31	96	0	119	39	15	21	23	1.92
37105621--37105663	19	2.3	19	79	0	50	13	32	23	30	1.93
37110283--37110430	48	3.1	48	88	0	224	29	24	7	38	1.83
37111701--37111753	27	2.0	27	85	3	72	39	20	11	28	1.87
37122946--37123128	40	4.6	39	80	9	192	25	22	27	24	2.00
37122997--37123161	79	2.1	79	83	6	201	26	21	27	24	1.99
37141898--37141944	23	2.0	23	95	0	85	36	23	10	29	1.89
37147126--37147180	27	2.0	27	96	0	101	36	9	25	29	1.87
37147195--37147279	27	3.2	25	77	12	80	30	8	21	40	1.82
37150197--37150563	49	7.7	49	90	3	570	34	8	28	29	1.86
37150197--37150563	96	3.8	96	91	2	560	34	8	28	29	1.86
37150197--37150563	145	2.6	146	91	3	568	34	8	28	29	1.86
37150682--37150760	37	2.1	37	90	0	122	24	18	31	25	1.98
37152046--37152160	42	2.7	44	76	10	121	30	26	17	26	1.97
37158127--37158709	40	14.6	40	94	1	913	27	28	20	23	1.99
37166391--37166778	40	9.7	40	97	0	722	22	28	19	29	1.98
37177725--37177754	16	1.9	16	93	6	53	50	20	0	30	1.49
37186367--37186464	25	3.9	25	75	12	85	31	21	22	24	1.98
37186352--37186466	50	2.3	50	84	3	151	31	21	22	24	1.98
37195971--37196030	28	2.1	28	87	0	84	21	23	25	30	1.99
37196379--37196443	27	2.4	27	84	0	85	26	16	16	40	1.90
37196379--37196453	27	2.8	26	75	15	64	26	16	18	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37212227--37212312	43	2.0	43	82	13	106	26	27	18	26	1.98
37217292--37217514	39	5.7	40	85	8	266	25	22	27	24	2.00
37217292--37217514	79	2.8	81	84	9	282	25	22	27	24	2.00
37217292--37217547	79	3.3	79	81	10	217	26	21	27	24	1.99
37218907--37219019	40	2.8	40	84	0	118	35	26	15	22	1.94
37218926--37219042	40	2.9	40	85	0	153	33	26	17	23	1.96
37223537--37223571	18	1.9	18	94	0	61	31	14	8	45	1.75
37225654--37225895	40	6.1	40	89	5	350	24	21	27	26	1.99
37229702--37229809	43	2.5	43	82	7	130	26	13	26	32	1.94
37229702--37229827	43	2.9	43	75	12	114	24	15	28	30	1.96
37234862--37234909	24	2.0	24	84	11	64	39	6	12	41	1.68
37248123--37248209	29	3.0	28	88	8	131	26	13	29	29	1.94
37248490--37248545	26	2.1	27	80	6	69	53	21	12	12	1.71
37251002--37251112	43	2.6	43	83	8	145	27	18	25	29	1.98
37255377--37255559	79	2.3	81	84	7	232	24	22	27	25	2.00
37255378--37255561	40	4.6	40	83	9	216	23	22	28	25	2.00
37255430--37255594	79	2.1	79	84	6	210	25	21	27	25	1.99
37259882--37260200	48	6.6	48	75	5	214	26	20	30	22	1.98
37259878--37260199	96	3.4	95	78	5	290	26	19	30	22	1.98
37259876--37260150	144	1.9	144	84	1	372	27	19	29	23	1.98
37259869--37260190	144	2.2	144	80	3	369	26	19	30	23	1.98
37263555--37263817	40	6.6	40	88	3	325	24	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37263594--37263852	80	3.3	80	85	3	256	25	20	27	25	1.99
37271507--37271769	40	6.6	40	88	3	325	24	20	27	26	1.99
37271546--37271804	80	3.3	80	85	3	256	25	20	27	25	1.99
37276280--37276371	27	3.4	27	92	0	148	26	22	9	41	1.85
37276403--37276526	27	4.6	27	87	6	162	44	22	5	27	1.75
37276384--37276502	54	2.2	54	83	8	154	42	22	7	26	1.80
37276403--37276583	54	3.3	55	80	9	174	43	20	6	29	1.76
37276538--37276589	27	1.9	28	88	7	81	42	13	9	34	1.77
37276643--37276707	27	2.4	27	87	5	87	36	16	23	23	1.94
37277516--37277592	25	3.1	24	83	5	82	32	24	16	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276