genome.fa.s12.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  151  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49170736--49170773	6	6.3	6	87	0	58	23	15	13	47	1.81
49176277--49176349	23	3.2	22	65	7	56	52	12	21	13	1.74
49176276--49176369	46	2.0	46	95	0	170	48	12	22	15	1.79
49177240--49177285	20	2.4	19	85	7	67	71	0	4	23	1.03
49177252--49177294	19	2.3	18	80	11	50	76	0	9	13	1.01
49177323--49177363	11	3.5	12	83	12	50	78	0	21	0	0.76
49195023--49195111	6	14.8	6	93	0	133	22	15	12	49	1.78
49199046--49199085	11	3.6	11	86	0	62	17	0	32	50	1.47
49199451--49199528	30	2.6	28	86	11	95	30	24	17	26	1.97
49199464--49199528	30	2.2	30	97	0	121	27	27	16	27	1.97
49207219--49207259	22	1.9	21	85	5	55	19	24	41	14	1.89
49208400--49208491	47	2.0	47	82	4	114	22	29	19	28	1.98
49208455--49208665	46	4.5	46	76	10	164	23	27	19	28	1.98
49209911--49209943	17	1.9	17	100	0	66	30	24	18	27	1.98
49211709--49211927	40	5.5	40	86	4	275	25	28	23	22	1.99
49214991--49215036	23	2.0	23	86	0	65	45	13	6	34	1.69
49215102--49215207	55	1.9	55	100	0	212	30	3	18	47	1.67
49216227--49216405	89	2.0	88	93	1	304	27	13	17	40	1.88
49217523--49218040	126	4.1	126	84	4	636	39	16	16	27	1.90
49217523--49218040	251	2.1	251	83	5	638	39	16	16	27	1.90
49222703--49222756	24	2.2	24	84	12	67	29	37	16	16	1.91
49227240--49227423	40	4.6	40	83	6	205	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49227240--49227420	80	2.3	81	84	9	230	23	21	27	27	1.99
49230782--49230982	40	5.0	40	94	0	339	19	21	31	27	1.97
49230971--49231113	43	3.3	43	85	0	187	13	21	31	33	1.92
49231232--49231286	25	2.2	25	93	6	94	30	12	29	27	1.93
49234816--49235331	47	11.0	47	93	0	800	34	12	28	25	1.92
49242383--49242421	18	2.2	19	90	9	64	10	51	28	10	1.68
49246995--49247030	18	2.0	18	94	0	63	38	8	27	25	1.84
49248243--49248285	21	2.0	21	90	0	68	34	23	9	32	1.87
49250309--49250399	28	3.1	29	85	6	105	37	8	0	53	1.32
49250414--49250443	14	2.2	13	94	5	51	33	0	0	66	0.92
49251384--49251531	74	2.0	74	97	0	278	35	8	10	45	1.69
49255602--49255718	42	2.8	42	77	13	123	21	17	31	29	1.96
49263989--49264086	27	3.5	28	90	2	135	26	13	27	32	1.93
49264017--49264099	27	3.0	27	87	5	96	30	12	25	32	1.92
49263989--49264100	28	4.0	27	83	6	98	28	12	25	33	1.92
49272000--49272272	40	6.8	40	89	2	377	24	28	22	24	1.99
49271999--49272272	122	2.3	120	88	1	413	24	28	22	24	1.99
49277477--49277598	42	2.8	43	77	10	133	24	18	27	29	1.98
49277460--49277594	43	3.1	44	75	16	131	24	17	28	29	1.97
49288957--49289218	39	6.7	40	88	7	337	24	27	22	25	2.00
49297032--49297091	22	2.8	21	75	12	59	68	0	0	31	0.90
49297033--49297099	20	3.3	20	76	12	59	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49300528--49300571	13	3.5	13	75	12	56	70	0	13	15	1.17
49300528--49300583	25	2.3	25	93	3	96	69	1	12	16	1.27
49300528--49300586	12	4.8	12	74	16	50	71	1	11	15	1.23
49302335--49302586	40	6.3	40	84	3	303	27	27	21	23	1.99
49302335--49302586	80	3.2	80	86	1	337	27	27	21	23	1.99
49302326--49302585	120	2.2	120	90	2	407	27	27	21	23	1.99
49311254--49311366	42	2.7	43	76	5	113	28	19	23	28	1.98
49314096--49314300	103	2.0	103	99	0	401	31	12	23	32	1.91
49314425--49314668	122	2.0	122	99	0	479	28	15	22	32	1.95
49325257--49325408	40	3.8	40	88	2	207	25	28	21	23	1.99
49337559--49337689	48	2.7	48	90	0	208	33	31	17	17	1.93
49344524--49344587	29	2.2	29	88	0	92	21	26	34	17	1.95
49346830--49346887	13	4.5	13	82	0	80	29	22	3	44	1.69
49346931--49346998	25	2.8	25	88	2	93	32	20	22	25	1.98
49359471--49359577	37	2.9	37	94	0	178	27	31	18	22	1.97
49359728--49359910	48	3.8	48	89	5	296	31	26	6	35	1.82
49359729--49359910	98	1.9	98	94	2	321	31	26	6	35	1.82
49359880--49360120	47	5.1	47	91	0	374	26	27	11	34	1.90
49364052--49364324	29	9.5	29	95	2	462	28	11	26	33	1.91
49378749--49378875	47	2.6	48	88	5	184	7	22	5	63	1.42
49378881--49379013	44	2.9	45	81	8	146	10	28	6	54	1.58
49379917--49379941	12	2.1	12	100	0	50	68	8	0	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49382031--49382086	2	28.0	2	96	0	103	51	0	48	0	1.00
49384500--49384552	26	2.0	26	100	0	106	32	7	15	45	1.74
49387144--49387184	20	2.0	20	100	0	82	29	17	24	29	1.97
49387152--49387528	63	6.0	63	100	0	754	31	14	20	33	1.93
49387495--49387594	28	3.5	29	93	2	168	30	12	25	33	1.92
49388046--49388150	52	2.0	52	98	0	201	6	20	23	48	1.73
49394223--49394271	23	2.2	22	82	10	55	28	16	16	38	1.90
49402676--49402884	28	7.6	27	91	4	310	27	12	28	30	1.93
49402676--49402884	55	3.8	55	94	1	337	27	12	28	30	1.93
49410909--49411088	28	6.5	28	94	2	294	26	13	28	31	1.94
49410909--49411088	55	3.3	55	94	1	299	26	13	28	31	1.94
49410909--49411088	83	2.2	82	93	1	306	26	13	28	31	1.94
49414231--49414279	25	2.0	25	83	0	62	36	6	14	42	1.70
49417595--49417648	28	2.0	28	85	3	74	42	9	1	46	1.46
49422680--49422787	43	2.5	43	77	11	114	33	27	18	20	1.96
49425238--49425321	27	3.1	27	86	8	109	36	23	22	16	1.94
49426145--49426498	177	2.0	177	93	1	611	27	23	18	30	1.98
49426916--49426986	24	3.0	24	95	0	124	25	38	1	35	1.65
49431190--49431229	21	1.9	21	85	10	55	55	15	25	5	1.60
49432841--49433024	40	4.6	40	77	10	189	26	27	21	24	1.99
49432841--49433022	79	2.3	80	79	10	194	26	28	20	24	1.99
49440593--49440668	38	2.0	38	94	0	134	39	9	14	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49440948--49440990	20	2.2	20	100	0	86	37	11	18	32	1.87
49440955--49440998	20	2.2	20	91	0	70	34	11	22	31	1.90
49441043--49441186	24	6.0	24	86	8	195	29	19	21	29	1.98
49441379--49441442	31	2.1	31	90	0	101	35	15	23	25	1.94
49448965--49449012	25	1.9	25	91	0	78	35	25	14	25	1.94
49449056--49449111	20	2.8	20	94	0	94	35	10	21	32	1.88
49449164--49449317	24	6.4	24	88	5	231	31	18	20	29	1.96
49452498--49452582	28	3.0	28	91	3	134	24	30	14	30	1.94
49456015--49456178	43	3.8	42	74	13	136	29	26	18	25	1.98
49457836--49457864	14	2.0	15	93	6	51	55	0	44	0	0.99
49461116--49461169	18	3.1	18	91	2	83	29	16	11	42	1.83
49462389--49462450	28	2.2	28	91	5	99	30	29	11	29	1.91
49463489--49463541	22	2.4	22	83	3	61	35	15	16	32	1.90
49463942--49463975	17	2.0	17	94	0	59	35	32	5	26	1.81
49465660--49465695	18	2.1	18	89	5	56	27	16	11	44	1.82
49466781--49466869	28	3.1	28	87	3	133	28	32	14	24	1.95
49467093--49467123	16	1.9	16	93	0	53	9	19	16	54	1.68
49467377--49467415	20	1.9	21	84	5	53	33	23	10	33	1.88
49483747--49484868	47	23.6	47	94	2	1535	26	28	10	34	1.89
49486121--49486299	85	2.1	85	96	0	331	25	27	8	38	1.85
49487554--49487840	40	7.4	40	75	12	253	27	27	20	24	1.99
49487657--49487875	109	2.0	109	99	0	429	31	26	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49487953--49488027	38	2.0	38	86	5	107	24	26	18	30	1.98
49490478--49491584	96	11.6	95	97	1	1913	28	29	9	33	1.88
49491703--49491791	44	2.0	44	97	0	169	38	16	11	33	1.85
49492946--49493294	85	4.1	85	99	0	689	26	26	8	38	1.85
49494548--49494748	40	5.1	40	89	0	287	24	27	22	24	2.00
49494802--49494876	38	2.0	38	86	5	107	24	26	18	30	1.98
49497306--49497475	47	3.6	47	85	6	234	28	30	7	33	1.85
49498741--49499089	85	4.1	85	98	0	673	26	26	8	38	1.85
49505045--49505102	19	3.4	19	65	30	58	18	17	17	46	1.84
49505034--49505153	6	19.3	6	69	19	77	20	17	14	48	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276