genome.fa.s12.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  133  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43101776--43101834	11	5.7	11	69	15	54	40	10	16	32	1.82
43101775--43101851	40	1.9	40	94	0	136	38	10	18	32	1.84
43101901--43101976	26	2.9	26	96	0	134	31	25	18	25	1.97
43101901--43102011	26	4.4	25	87	3	89	32	22	18	26	1.97
43104842--43106381	768	2.0	768	99	0	3026	36	13	15	33	1.88
43109685--43109752	29	2.3	29	82	5	84	27	29	13	29	1.94
43109574--43109901	174	1.9	174	96	0	602	31	24	14	30	1.94
43109854--43109932	29	2.7	30	82	13	110	30	30	13	25	1.94
43113286--43113463	27	6.6	27	84	3	205	29	28	15	26	1.96
43113307--43113462	82	1.9	81	88	3	233	29	28	15	26	1.96
43116609--43116973	141	2.6	145	78	10	387	25	19	29	25	1.99
43116607--43116972	48	7.7	48	74	11	249	25	19	29	25	1.99
43125893--43126224	166	2.0	166	96	0	619	26	12	23	37	1.91
43135349--43135398	24	2.0	25	96	3	93	32	20	20	28	1.97
43135629--43135812	42	4.4	42	81	9	194	27	15	24	32	1.95
43135717--43135852	42	3.3	43	79	13	151	27	13	26	31	1.94
43153911--43154089	48	3.7	48	98	0	340	35	7	26	31	1.84
43154063--43154111	22	2.2	22	96	0	89	30	14	30	24	1.94
43154015--43154159	70	2.1	70	97	0	272	34	8	27	28	1.87
43154315--43154417	37	2.8	37	96	0	188	23	20	32	24	1.98
43157146--43157246	48	2.1	48	96	0	184	28	27	19	23	1.99
43157146--43157272	48	2.6	48	91	0	164	29	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43174422--43174515	40	2.3	40	87	0	125	30	17	24	27	1.97
43179351--43179432	40	2.0	40	95	0	146	42	3	15	37	1.65
43179658--43179769	40	2.8	40	79	6	118	31	12	24	32	1.92
43179699--43179813	44	2.8	41	74	11	101	28	13	24	33	1.93
43183976--43184111	5	27.4	5	77	12	138	37	2	19	39	1.67
43184035--43184109	39	1.9	39	94	0	132	34	5	21	38	1.76
43185942--43186031	20	4.5	20	68	15	69	11	27	20	41	1.86
43185949--43186124	60	2.9	60	82	0	217	11	28	19	39	1.87
43186056--43186124	20	3.5	19	75	15	68	8	30	23	37	1.85
43191725--43191845	44	2.8	44	78	10	142	31	28	17	22	1.96
43203603--43203628	12	2.2	12	100	0	52	19	23	7	50	1.73
43205655--43205706	26	2.0	26	96	0	95	34	19	17	28	1.94
43207064--43207146	40	2.1	40	100	0	166	36	25	4	33	1.77
43217384--43217430	23	2.0	23	95	0	85	12	19	17	51	1.77
43222516--43222551	18	2.0	18	100	0	72	11	50	16	22	1.77
43229821--43229875	24	2.2	26	80	9	69	34	23	21	20	1.97
43229823--43229917	25	3.8	25	82	6	104	27	24	21	27	1.99
43229847--43229930	25	3.4	25	83	6	91	28	20	21	29	1.98
43230137--43230220	31	2.7	31	88	1	125	32	17	25	25	1.97
43234428--43234534	53	2.0	53	83	3	135	19	25	19	35	1.95
43234510--43234560	26	2.0	26	96	0	93	17	25	19	37	1.94
43234642--43234936	47	6.3	47	74	9	192	25	25	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43234817--43234934	45	2.6	46	86	2	148	24	26	16	33	1.96
43234691--43234934	92	2.6	93	74	9	262	24	25	16	33	1.96
43241830--43242007	27	6.6	27	83	3	205	26	15	28	29	1.96
43241831--43241986	82	1.9	81	88	3	233	26	15	28	29	1.96
43241827--43242007	82	2.2	81	83	2	229	27	15	27	29	1.96
43244123--43244311	55	3.5	53	85	5	245	21	25	18	34	1.96
43244298--43244599	47	6.4	47	75	8	215	24	24	17	34	1.96
43244282--43244696	187	2.2	186	81	5	460	23	24	18	33	1.96
43246853--43247139	48	5.9	48	79	4	299	28	15	28	27	1.96
43246853--43247134	96	2.9	96	88	3	379	29	15	28	27	1.96
43251796--43251980	79	2.3	81	84	7	236	24	22	27	25	2.00
43251797--43251980	40	4.6	40	83	9	216	24	22	27	25	2.00
43251797--43252013	79	2.7	79	81	7	201	25	22	27	24	2.00
43259740--43259962	39	5.7	40	85	8	266	25	22	27	24	2.00
43259740--43259962	79	2.8	81	84	9	282	25	22	27	24	2.00
43259740--43259995	79	3.3	79	81	10	217	26	21	27	24	1.99
43262814--43262845	15	2.1	15	100	0	64	43	12	6	37	1.68
43264520--43264552	14	2.2	16	89	10	52	24	3	18	54	1.57
43265644--43265908	89	3.0	89	80	7	267	23	17	24	33	1.96
43265644--43265824	45	4.0	45	89	1	256	22	17	24	35	1.95
43266291--43266343	13	4.1	13	75	0	52	33	7	22	35	1.83
43266876--43266913	19	2.1	19	90	5	60	31	15	13	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43273471--43273555	32	2.7	32	80	10	93	30	3	24	41	1.72
43273693--43273788	27	3.6	26	74	5	86	28	12	28	31	1.93
43276944--43277010	28	2.4	28	100	0	134	19	22	43	14	1.87
43278519--43278707	80	2.4	80	96	0	342	25	28	22	23	1.99
43278519--43278710	40	4.8	40	82	3	226	26	28	21	23	1.99
43285577--43285666	33	2.7	33	98	0	171	24	30	31	14	1.95
43286379--43286463	17	5.1	17	72	15	70	15	8	10	65	1.45
43287959--43287989	6	5.2	6	100	0	62	16	0	0	83	0.64
43288980--43289010	4	7.8	4	100	0	62	51	22	0	25	1.48
43292678--43292905	40	5.7	40	97	0	420	30	20	27	21	1.98
43298194--43298368	86	2.0	86	100	0	350	42	14	24	18	1.88
43298455--43298591	21	6.7	21	73	14	51	9	18	2	69	1.29
43298475--43298601	12	10.6	12	71	12	55	10	18	2	68	1.29
43298472--43298592	18	6.4	18	71	9	98	9	19	2	69	1.27
43298472--43298579	6	17.7	6	71	5	74	8	18	2	70	1.25
43301563--43301609	20	2.3	20	85	0	67	21	12	36	29	1.91
43301819--43301878	28	2.2	28	93	3	104	18	23	41	16	1.90
43312492--43312532	21	2.0	22	85	9	59	46	9	2	41	1.50
43316336--43316506	93	1.8	93	94	0	306	28	28	21	22	1.99
43316331--43316503	46	3.7	46	77	13	201	28	27	21	22	1.99
43317867--43318096	44	5.2	44	71	12	211	28	19	24	27	1.98
43317865--43318106	88	2.8	88	98	0	466	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43318120--43318358	130	1.8	130	82	8	306	28	25	19	27	1.99
43318301--43318406	44	2.4	44	85	7	135	32	25	17	24	1.97
43318115--43318387	131	2.1	129	79	8	304	27	26	18	27	1.98
43318454--43318880	88	4.8	88	90	2	608	22	24	19	33	1.97
43318648--43318880	44	5.3	44	64	15	131	22	22	22	33	1.98
43318805--43319364	131	4.3	130	87	3	742	26	23	21	28	1.99
43319431--43319558	64	2.0	64	92	3	213	34	16	18	30	1.93
43326196--43326243	3	16.0	3	95	0	87	64	0	2	33	1.05
43326366--43326560	3	64.3	3	70	16	82	64	4	6	25	1.36
43326399--43326437	20	2.0	20	89	0	60	71	0	5	23	1.05
43326478--43326545	34	1.9	34	85	8	91	63	2	7	26	1.35
43326666--43326695	5	5.8	5	96	4	51	80	0	0	20	0.72
43330634--43330697	13	4.9	13	74	0	65	35	25	6	32	1.81
43330634--43330697	26	2.5	26	86	0	101	35	25	6	32	1.81
43343602--43343776	49	3.6	49	80	2	165	28	21	28	22	1.99
43347907--43348021	55	2.1	56	82	8	137	34	21	23	20	1.96
43347932--43348021	28	3.2	27	84	7	110	32	23	23	21	1.98
43347932--43348021	27	3.2	27	82	7	101	32	23	23	21	1.98
43348127--43348191	28	2.3	28	94	0	112	30	7	27	33	1.85
43354796--43354842	20	2.3	20	85	3	58	27	6	4	61	1.39
43355816--43355930	55	2.1	56	83	8	146	34	21	24	19	1.96
43355841--43355930	27	3.2	27	85	7	119	32	23	24	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43356036--43356100	28	2.3	28	89	0	94	33	7	24	33	1.84
43361401--43361625	40	5.7	40	85	5	287	24	22	28	25	1.99
43368967--43369374	96	4.3	96	83	4	468	26	26	19	27	1.99
43368914--43369374	144	3.2	143	76	7	423	26	26	19	27	1.99
43368914--43369374	48	9.6	48	76	3	351	26	26	19	27	1.99
43372723--43372894	93	1.8	93	92	0	290	28	27	20	22	1.99
43372716--43372891	46	3.8	46	75	12	180	29	27	20	22	1.98
43378178--43378212	13	2.7	13	95	0	61	25	42	0	31	1.55
43383100--43383263	40	4.1	40	85	4	199	21	22	28	26	1.99
43387928--43388353	48	8.9	48	77	7	398	24	27	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276