genome.fa.s12.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  111  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35221107--35221218	51	2.2	51	90	3	172	41	10	21	26	1.86
35222803--35222946	31	4.7	31	89	2	213	26	25	18	29	1.98
35222970--35223103	42	3.2	42	98	0	259	33	20	14	31	1.93
35225427--35225678	46	5.5	46	87	1	335	41	14	23	20	1.89
35225427--35225678	93	2.7	92	88	1	344	41	14	23	20	1.89
35225761--35225830	26	2.7	24	78	10	68	38	2	21	37	1.68
35226837--35226881	22	2.0	22	83	12	56	44	6	26	22	1.77
35228553--35228579	14	1.9	14	100	0	54	22	0	0	77	0.76
35229775--35229890	51	2.3	51	93	0	196	41	10	22	25	1.85
35230722--35231061	46	7.4	46	88	0	457	41	12	21	23	1.88
35230815--35230887	21	3.3	21	67	14	65	36	10	24	27	1.89
35230790--35230866	25	3.2	25	64	14	63	40	12	22	24	1.89
35231148--35231217	26	2.7	24	78	10	68	38	2	21	37	1.68
35233582--35233642	24	2.5	24	84	5	79	34	1	3	60	1.23
35233748--35233790	19	2.2	20	80	12	54	44	0	0	55	0.99
35233762--35233803	19	2.3	18	84	15	52	42	0	0	57	0.99
35234173--35234198	9	2.9	9	100	0	52	34	0	7	57	1.27
35235033--35235062	2	15.0	2	100	0	60	0	0	50	50	1.00
35235304--35235329	9	2.9	9	100	0	52	34	0	7	57	1.27
35236164--35236193	2	15.0	2	100	0	60	0	0	50	50	1.00
35236672--35236705	6	5.5	6	89	6	50	20	17	14	47	1.83
35236733--35236778	6	8.2	6	85	9	62	19	17	15	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35236903--35236953	19	2.8	19	79	8	70	33	7	9	49	1.65
35236900--35236969	18	3.9	18	70	12	54	32	10	14	42	1.78
35236976--35237024	18	2.7	19	81	12	68	36	4	14	44	1.64
35238573--35238606	6	5.5	6	89	6	50	20	17	14	47	1.83
35238634--35238679	6	8.2	6	85	9	62	19	17	15	47	1.82
35238804--35238854	19	2.8	19	79	8	70	33	7	9	49	1.65
35238801--35238870	18	3.9	18	70	12	54	32	10	14	42	1.78
35238877--35238925	18	2.7	19	81	12	68	36	4	14	44	1.64
35240941--35240974	17	2.0	17	88	0	50	50	8	5	35	1.58
35240947--35240982	17	2.1	17	94	0	63	47	8	5	38	1.57
35241385--35241430	18	2.3	21	85	10	62	28	6	0	65	1.17
35242130--35242160	13	2.4	13	88	0	53	61	9	0	29	1.28
35242122--35242160	7	5.7	7	88	11	55	58	10	2	28	1.44
35243326--35243361	17	2.1	18	94	5	65	30	0	0	69	0.89
35243954--35244115	26	6.2	26	97	0	297	32	6	25	35	1.81
35257446--35257521	27	2.9	25	79	9	71	39	7	15	36	1.77
35259776--35259880	42	2.5	42	76	6	113	32	20	18	29	1.96
35268101--35268414	49	6.6	49	73	11	208	23	27	20	28	1.99
35268059--35268417	142	2.5	142	80	9	356	24	27	20	28	1.99
35268152--35268425	94	2.9	92	78	7	295	24	27	20	28	1.99
35281746--35281808	30	2.1	30	100	0	126	26	9	26	36	1.87
35284926--35284976	24	2.1	24	100	0	102	52	19	19	7	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35285187--35285272	28	3.0	28	86	3	118	27	13	29	29	1.95
35286120--35286154	18	1.9	18	94	0	61	25	5	2	65	1.28
35289504--35289589	28	3.0	28	83	3	109	27	13	29	29	1.95
35304155--35304189	5	7.0	5	100	0	70	60	0	0	40	0.97
35304164--35304197	15	2.3	15	89	0	50	64	2	0	32	1.08
35304452--35304526	21	3.6	20	77	8	87	46	4	18	30	1.67
35304452--35304541	42	2.1	42	100	0	180	46	4	17	31	1.68
35304468--35304541	21	3.5	22	76	9	91	45	5	16	32	1.70
35306704--35306859	42	3.7	42	74	3	134	29	16	26	26	1.97
35306704--35306857	84	1.8	84	84	0	209	29	16	26	26	1.97
35314144--35314324	42	4.2	42	73	9	148	29	14	26	29	1.95
35331792--35331827	19	2.0	19	89	10	58	55	0	2	41	1.14
35339607--35339668	31	2.0	31	100	0	124	45	0	12	41	1.42
35344441--35344495	24	2.3	24	96	0	101	27	16	7	49	1.72
35349420--35349454	18	2.0	18	88	5	54	42	0	0	57	0.99
35351297--35351340	19	2.3	19	100	0	88	22	18	43	15	1.88
35351804--35351848	20	2.3	20	84	3	56	31	17	24	26	1.97
35351841--35351979	60	2.3	59	85	8	174	28	20	25	25	1.99
35351877--35351989	28	3.9	28	66	21	72	28	20	25	25	1.99
35355764--35355943	2	90.0	2	100	0	360	50	50	0	0	1.00
35359090--35359120	16	1.9	16	93	0	53	38	12	0	48	1.42
35366781--35366943	82	2.0	82	98	0	317	20	18	20	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35367947--35368000	28	2.0	28	82	10	67	25	12	16	44	1.84
35368078--35368127	11	4.6	10	85	14	64	26	34	0	40	1.56
35368121--35368160	21	1.9	21	85	10	55	22	22	10	45	1.82
35369832--35369875	18	2.4	18	88	0	61	18	27	9	45	1.79
35370352--35370436	39	2.2	39	79	6	93	43	7	4	44	1.52
35373803--35373835	7	4.7	7	85	14	50	45	42	0	12	1.41
35374441--35374537	46	2.2	45	83	12	121	39	14	3	43	1.61
35379175--35379248	29	2.5	29	86	4	94	50	14	14	20	1.78
35379966--35380025	28	2.2	28	90	3	95	43	5	1	50	1.34
35382812--35382870	24	2.4	25	80	8	68	42	1	1	54	1.20
35382941--35382972	16	2.0	16	100	0	64	56	0	12	31	1.37
35383497--35383547	17	3.1	17	70	13	52	41	3	3	50	1.39
35383823--35383856	3	11.3	3	100	0	68	67	0	32	0	0.91
35384546--35384585	3	13.3	3	94	0	71	37	0	30	32	1.58
35394295--35394548	87	2.9	87	85	0	267	27	15	21	35	1.94
35401948--35402014	20	3.3	20	85	0	98	34	11	20	32	1.90
35402064--35402135	24	3.0	24	83	6	92	29	22	20	27	1.99
35402329--35402392	31	2.1	31	93	0	110	37	15	23	23	1.93
35410002--35410040	20	2.0	20	100	0	78	35	12	20	30	1.90
35410092--35410208	23	5.0	23	83	4	137	27	21	19	31	1.97
35413767--35413852	38	2.3	36	79	14	95	29	37	12	20	1.90
35413767--35413858	36	2.5	37	78	16	100	30	38	11	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35417132--35417242	47	2.4	47	83	6	145	35	22	16	26	1.95
35418005--35418085	4	19.8	4	74	5	63	4	24	3	66	1.28
35418112--35418160	17	3.0	17	76	8	57	55	2	0	42	1.11
35418614--35418677	20	3.2	20	77	14	71	32	6	15	45	1.71
35419278--35419394	61	2.0	60	88	5	175	51	5	2	40	1.40
35419336--35419443	48	2.2	51	85	6	141	52	5	3	37	1.42
35419717--35419752	19	1.9	19	94	5	65	16	5	27	50	1.68
35419890--35419928	14	2.8	13	85	11	51	38	10	2	48	1.51
35420691--35420748	23	2.5	23	100	0	116	43	8	12	36	1.73
35427760--35427796	19	1.9	19	88	0	56	75	2	2	18	1.04
35436641--35436691	27	2.0	27	88	7	79	56	1	1	39	1.22
35441506--35441583	38	2.1	38	100	0	156	41	7	23	28	1.82
35442657--35442994	168	2.0	168	99	0	667	36	18	15	30	1.91
35448152--35448187	2	18.0	2	100	0	72	50	0	50	0	1.00
35455256--35455314	9	6.6	9	84	0	73	42	22	10	25	1.84
35455333--35455373	6	6.5	6	83	10	55	17	0	4	78	0.93
35456417--35456741	48	6.8	48	85	5	392	24	29	19	27	1.98
35458666--35458990	48	6.8	48	85	5	392	24	29	19	27	1.98
35473802--35473835	16	2.0	17	88	11	52	29	5	17	47	1.71
35475448--35475776	96	3.4	94	82	6	356	26	18	29	25	1.98
35475449--35475776	48	6.8	48	73	6	234	26	18	29	25	1.98
35477728--35477776	25	2.0	25	100	0	98	28	8	12	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35477927--35477966	21	1.9	21	89	0	62	17	32	15	35	1.91
35483961--35484075	61	1.9	61	83	0	149	49	13	21	14	1.78
35485219--35485271	13	3.5	16	80	15	60	9	0	13	77	0.99
35485444--35485807	44	8.0	44	76	11	293	30	19	17	32	1.95
35485444--35485807	95	3.9	94	74	11	252	30	19	17	32	1.95
35491801--35492060	49	5.5	49	75	9	236	24	30	20	24	1.99
35491801--35491980	96	1.8	96	87	5	263	25	30	19	24	1.98
35491801--35492023	96	2.3	96	82	8	262	25	30	18	24	1.98
35491801--35492060	46	5.5	47	78	10	246	24	30	20	24	1.99
35492068--35492183	38	3.1	38	97	0	214	19	36	18	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276