genome.fa.s12.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  162  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52827576--52827968	196	2.0	196	97	0	741	41	9	20	29	1.83
52833124--52833218	34	2.4	42	68	27	107	46	4	22	27	1.70
52833144--52833214	34	2.1	34	97	0	133	42	5	22	29	1.76
52836347--52836401	27	2.1	27	93	3	94	18	10	12	58	1.63
52837083--52837181	27	3.7	27	80	6	112	32	22	15	30	1.94
52839548--52839617	30	2.3	30	85	0	95	27	17	17	38	1.91
52845025--52845059	13	2.7	13	95	0	61	22	45	20	11	1.82
52845158--52845381	112	2.0	112	94	0	394	42	27	6	23	1.78
52846668--52846719	26	2.0	26	100	0	104	26	26	7	38	1.83
52847171--52847228	17	3.4	17	68	13	55	32	17	8	41	1.80
52847170--52847236	35	1.9	35	100	0	134	35	19	7	37	1.80
52850292--52850477	55	3.5	53	80	8	198	21	23	18	36	1.95
52850464--52850585	47	2.6	47	97	0	226	25	24	13	36	1.93
52851012--52851036	8	3.1	8	100	0	50	60	0	12	28	1.32
52853529--52853572	15	2.9	15	82	3	61	31	25	0	43	1.55
52853781--52854475	343	2.0	343	99	0	1374	36	17	4	41	1.71
52854767--52854797	12	2.6	12	94	0	53	0	25	0	74	0.82
52855498--52855522	13	1.9	13	100	0	50	32	12	0	56	1.36
52859475--52859533	23	2.5	22	73	10	55	45	20	0	33	1.51
52859875--52859903	11	2.5	12	94	5	51	27	17	0	55	1.42
52860300--52860337	17	2.2	18	86	13	53	0	21	0	78	0.74
52860686--52860720	17	2.0	18	88	5	54	40	11	0	48	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52863475--52863580	27	3.9	27	81	2	124	29	18	17	33	1.95
52863473--52863580	54	2.0	54	83	3	137	28	18	17	35	1.94
52869693--52869752	27	2.3	27	82	11	79	21	25	16	36	1.94
52870288--52870341	26	2.1	26	100	0	108	35	14	11	38	1.82
52875560--52875593	13	2.5	13	95	4	59	41	5	2	50	1.42
52882464--52882494	13	2.4	13	94	0	53	16	35	9	38	1.81
52887745--52887942	57	3.4	57	76	8	134	32	21	15	29	1.95
52888322--52888368	17	2.8	17	81	9	53	21	14	21	42	1.88
52895036--52895091	17	3.4	17	76	16	55	23	16	17	42	1.88
52897599--52897645	10	4.6	10	82	12	60	53	27	0	19	1.45
52897602--52897642	22	1.9	21	95	5	73	53	29	0	17	1.44
52898355--52898483	43	3.0	43	76	10	138	31	26	18	23	1.97
52900970--52901093	40	3.1	41	89	4	191	23	21	26	28	1.99
52919301--52919334	13	2.6	13	90	9	52	67	0	2	29	1.05
52925306--52925348	22	2.0	22	90	4	70	37	0	2	60	1.10
52935826--52936077	126	2.0	126	96	0	468	40	9	18	32	1.82
52941960--52941986	14	1.9	14	100	0	54	18	14	0	66	1.25
52951452--52951489	20	1.9	19	89	5	58	34	13	0	52	1.40
52968993--52969265	48	5.7	47	73	14	200	23	26	19	30	1.98
52968945--52969219	96	2.9	95	79	8	274	23	26	20	30	1.98
52968993--52969254	144	1.8	143	86	8	388	23	26	19	30	1.98
52971296--52971431	68	2.0	68	89	0	209	33	16	17	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52979753--52979814	23	2.7	23	74	2	61	38	11	8	41	1.70
52981157--52981426	47	5.8	47	79	13	249	28	18	29	23	1.98
52981161--52981426	140	1.9	141	84	9	366	28	18	29	23	1.98
52982520--52982558	21	1.9	21	94	5	71	10	33	30	25	1.89
52987865--52987902	12	3.2	12	96	3	69	23	7	23	44	1.79
52995522--52995580	28	2.1	28	100	0	118	49	6	11	32	1.66
52996945--52997003	31	1.9	30	83	13	75	45	6	11	35	1.67
53001802--53001955	28	5.5	28	94	1	247	33	27	12	27	1.92
53004024--53004058	10	3.5	10	92	0	61	68	0	14	17	1.21
53005431--53005464	13	2.6	13	95	0	59	5	38	38	17	1.74
53010913--53011036	27	4.6	27	92	2	185	27	13	28	30	1.94
53010913--53011036	55	2.3	54	90	1	185	27	13	28	30	1.94
53013542--53014571	515	2.0	515	100	0	2060	27	26	16	29	1.97
53030224--53030334	32	3.7	29	70	21	77	46	11	2	38	1.55
53030312--53030390	31	2.4	33	82	14	92	46	10	1	41	1.45
53036698--53036981	84	3.3	85	85	4	356	36	18	21	23	1.95
53036694--53036981	45	6.6	45	82	6	369	37	18	21	22	1.94
53036694--53037039	178	2.0	171	81	8	401	38	18	20	23	1.93
53036916--53037128	46	4.7	47	80	8	185	43	13	19	23	1.87
53036962--53037158	91	2.2	91	81	5	220	44	12	19	24	1.85
53041742--53041795	20	2.7	20	71	25	51	20	29	18	31	1.96
53041730--53041846	39	3.0	38	79	3	117	20	24	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53042800--53042838	19	2.1	19	90	0	60	25	2	17	53	1.56
53048409--53048448	21	2.0	20	85	5	53	42	20	0	37	1.52
53049325--53049464	50	2.8	50	91	0	208	37	21	14	27	1.92
53049326--53049457	25	5.3	25	72	3	113	36	22	14	26	1.93
53057664--53057851	94	2.0	94	97	0	358	23	13	32	29	1.93
53058120--53058319	27	7.4	27	84	2	249	34	18	22	25	1.96
53058120--53058319	54	3.7	54	87	2	285	34	18	22	25	1.96
53058971--53059022	27	2.0	26	84	3	68	17	26	21	34	1.95
53060666--53060990	180	1.8	179	88	0	497	31	18	9	39	1.84
53061316--53061347	16	2.0	16	93	0	55	34	18	0	46	1.49
53061559--53061986	50	8.5	50	77	4	378	30	25	17	26	1.97
53061559--53061986	101	4.3	99	76	6	344	30	25	17	26	1.97
53061553--53061944	151	2.6	151	88	0	579	30	26	17	25	1.98
53067278--53067330	26	2.0	27	85	3	72	67	3	5	22	1.28
53070988--53071297	154	2.0	154	98	0	602	40	22	13	23	1.90
53071330--53071427	35	2.7	37	87	12	150	37	10	16	35	1.82
53071330--53071420	19	4.9	19	92	8	161	37	10	15	36	1.83
53071330--53071443	19	5.8	22	87	10	96	36	9	15	37	1.81
53073493--53073604	27	4.2	26	85	7	143	36	24	24	15	1.93
53073493--53073604	54	2.1	54	88	3	163	36	24	24	15	1.93
53077080--53077191	27	4.2	26	76	7	107	15	26	23	34	1.94
53083068--53083245	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53083069--53083224	82	1.9	81	88	3	233	26	15	28	29	1.96
53083065--53083245	82	2.2	81	83	2	229	27	15	27	29	1.96
53097259--53097297	19	2.1	18	90	4	60	35	0	0	64	0.94
53105938--53106048	56	2.0	56	98	0	213	40	2	23	33	1.69
53135041--53135070	14	2.1	14	100	0	60	13	6	6	73	1.24
53140975--53141057	29	2.9	29	87	5	107	33	25	16	24	1.96
53142278--53142341	32	2.0	32	96	0	119	34	18	23	23	1.96
53143007--53143052	23	2.0	23	86	0	65	63	13	4	19	1.46
53145104--53145228	28	4.4	28	77	9	121	29	15	25	29	1.96
53145104--53145228	57	2.2	56	89	1	187	29	15	25	29	1.96
53145125--53145261	28	4.9	28	77	8	125	30	17	27	24	1.97
53147346--53147445	51	2.0	51	84	4	130	32	27	18	23	1.97
53147404--53147487	43	2.0	43	82	0	105	32	30	14	22	1.94
53149514--53149565	27	2.0	26	84	3	68	34	21	26	17	1.95
53150162--53150215	27	2.0	27	85	3	74	35	20	22	22	1.96
53150234--53150348	27	4.3	27	83	6	135	24	19	18	38	1.93
53150234--53150334	53	1.9	53	85	4	141	24	20	16	37	1.93
53161030--53161079	25	2.0	24	92	3	82	28	16	22	34	1.95
53163034--53163172	60	2.3	59	82	8	156	26	25	20	27	1.99
53163167--53163203	19	1.9	19	88	0	56	29	18	18	32	1.96
53165269--53165308	20	1.9	22	85	10	57	42	10	0	47	1.37
53166798--53166840	8	5.4	8	85	0	59	53	25	0	20	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53168297--53168436	29	4.9	29	87	2	167	26	15	31	26	1.96
53170555--53170653	28	3.5	28	88	1	135	32	25	13	29	1.93
53182418--53182704	27	10.6	27	86	0	376	39	20	8	31	1.82
53182418--53182752	81	4.1	81	83	4	363	40	20	8	31	1.82
53182418--53182757	27	12.6	26	78	6	250	39	20	8	30	1.83
53183132--53183233	27	3.8	27	85	5	116	18	22	21	37	1.94
53183132--53183233	54	1.9	53	83	2	132	18	22	21	37	1.94
53183393--53183458	12	5.4	12	75	10	62	19	16	15	48	1.81
53183377--53183443	31	2.2	31	86	5	91	19	17	14	47	1.82
53183424--53183474	24	2.1	24	85	0	66	25	15	7	50	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276