genome.fa.s12.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  222  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73954979--73955066	34	2.6	33	81	3	95	22	23	23	29	1.99
73955918--73955952	18	2.0	17	88	5	52	37	17	22	22	1.94
73976660--73976816	40	3.9	40	83	5	201	23	22	26	28	1.99
73977695--73977736	21	2.0	21	85	0	57	69	2	14	14	1.30
73985037--73985107	36	2.0	36	97	0	133	22	22	33	21	1.97
73986623--73986745	28	4.4	28	88	2	167	26	12	27	33	1.92
73986623--73986745	55	2.2	57	86	2	169	26	12	27	33	1.92
73986648--73986758	28	4.0	27	88	3	89	29	11	25	33	1.91
73995704--73995779	19	4.0	19	98	0	143	26	30	36	6	1.82
73998348--73998486	43	3.3	43	84	2	172	30	18	22	28	1.97
73998348--73998502	43	3.7	42	84	2	141	30	18	22	29	1.97
74003441--74003628	101	1.9	99	88	2	286	29	23	20	26	1.99
74005869--74005991	40	3.1	40	87	4	169	24	15	26	33	1.95
74022021--74022102	41	2.0	41	95	0	146	34	12	21	31	1.91
74022379--74022519	55	2.6	55	75	0	138	25	27	30	16	1.96
74024351--74024428	38	2.0	39	80	14	90	28	1	7	62	1.30
74028475--74028727	48	5.3	48	97	0	461	33	5	28	32	1.81
74028870--74028970	37	2.7	37	95	0	175	23	18	32	24	1.97
74035561--74035690	66	1.9	69	83	13	171	19	29	16	34	1.94
74035595--74035750	68	2.2	69	78	13	160	20	28	16	35	1.94
74039314--74039392	37	2.1	37	88	4	115	25	27	18	27	1.98
74039433--74040073	49	13.1	49	93	3	1042	29	29	8	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74045788--74045953	40	4.2	40	92	0	262	27	26	21	24	1.99
74052993--74053140	40	3.7	40	83	3	163	24	16	25	33	1.95
74058891--74059177	42	6.8	42	82	5	337	31	23	13	30	1.94
74058891--74059164	126	2.2	127	90	0	442	31	23	13	31	1.93
74058946--74059161	85	2.6	84	82	5	276	31	21	14	31	1.93
74068330--74068555	50	4.7	49	74	15	202	27	19	30	22	1.98
74068301--74068555	95	2.6	94	84	7	341	27	18	30	23	1.98
74078068--74078098	16	1.9	16	93	0	53	35	22	0	41	1.54
74078065--74078104	20	2.0	20	85	0	53	37	22	0	40	1.54
74078299--74078545	55	4.6	53	80	8	227	22	23	17	36	1.95
74078337--74078537	108	1.8	110	87	6	302	23	24	17	34	1.96
74085074--74085104	16	1.9	16	93	0	53	35	22	0	41	1.54
74085071--74085110	20	2.0	20	85	0	53	37	22	0	40	1.54
74085296--74085551	55	4.8	52	77	10	209	22	23	16	37	1.93
74101496--74101522	14	1.9	14	100	0	54	37	7	22	33	1.82
74107499--74107562	31	2.1	31	90	0	101	25	23	15	35	1.94
74107755--74107897	24	6.0	24	90	7	220	28	21	20	29	1.98
74107755--74107897	47	3.0	49	88	8	222	28	21	20	29	1.98
74107937--74107992	20	2.8	20	89	2	78	32	17	14	35	1.90
74108029--74108076	25	1.9	25	86	0	69	25	16	25	33	1.96
74114811--74114909	28	3.5	29	81	12	107	29	28	15	27	1.96
74115053--74115168	60	1.9	60	98	0	223	43	14	8	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74119028--74119079	26	2.0	26	96	0	95	50	17	3	28	1.64
74122846--74122887	20	2.1	20	86	8	59	38	0	0	61	0.96
74123290--74124192	82	11.0	82	99	0	1779	30	23	15	30	1.96
74126795--74126837	19	2.3	18	80	11	50	60	13	4	20	1.51
74130014--74130118	41	2.6	41	84	3	122	22	29	17	30	1.96
74142833--74142912	39	2.0	39	83	9	99	27	12	3	56	1.53
74148450--74148489	19	2.2	18	86	4	53	22	2	0	75	0.93
74148451--74148498	24	2.0	25	87	4	71	25	4	0	70	1.04
74149243--74149529	96	3.0	95	89	2	421	30	14	24	31	1.94
74150120--74150155	13	2.7	13	91	4	54	36	0	13	50	1.43
74150138--74150179	13	3.3	13	87	12	61	26	0	11	61	1.30
74150169--74150218	10	5.0	10	85	0	64	22	4	2	72	1.12
74150138--74150189	23	2.2	24	83	13	63	25	1	9	63	1.35
74150219--74150265	23	2.0	23	100	0	94	34	8	25	31	1.86
74151996--74152038	19	2.3	18	80	11	50	60	13	4	20	1.51
74155215--74155319	41	2.6	41	84	3	122	22	29	17	30	1.96
74170580--74170628	13	3.8	13	77	0	53	46	4	4	44	1.41
74172200--74172246	22	2.0	23	84	12	60	38	0	0	61	0.96
74173901--74174113	116	1.8	116	89	2	338	34	11	26	27	1.90
74174155--74174222	32	2.1	33	86	2	93	42	8	1	47	1.43
74178592--74178640	11	4.5	11	81	0	62	18	14	8	59	1.59
74178592--74178639	22	2.2	22	88	0	69	18	14	6	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74181910--74181940	12	2.6	12	89	0	53	9	22	51	16	1.73
74184534--74184716	79	2.3	81	82	7	214	24	23	26	25	2.00
74184534--74184718	40	4.7	40	80	6	207	24	23	27	25	2.00
74184587--74184751	79	2.1	79	80	6	183	26	21	26	25	2.00
74194575--74194654	15	5.4	15	75	12	76	11	17	12	58	1.62
74197040--74197215	46	3.8	46	78	10	187	21	19	29	30	1.97
74197036--74197207	93	1.8	93	89	0	272	20	19	30	29	1.97
74199423--74199456	7	4.9	7	100	0	68	26	29	0	44	1.55
74199462--74199531	5	13.4	5	80	8	77	18	4	1	75	1.04
74199455--74199531	16	4.8	16	77	4	84	18	5	1	75	1.06
74199462--74199531	26	2.7	26	85	14	99	18	4	1	75	1.04
74199455--74199536	21	4.0	20	79	9	85	18	4	1	75	1.04
74199462--74199539	26	3.0	24	81	17	93	17	5	1	75	1.05
74199579--74199607	13	2.2	13	100	0	58	20	0	10	68	1.18
74212596--74212650	29	2.0	29	85	7	78	41	3	25	29	1.72
74213147--74213308	43	3.8	41	77	9	148	25	18	22	32	1.97
74213147--74213258	44	2.6	43	80	9	131	25	20	22	31	1.98
74218919--74219096	27	6.6	27	83	3	205	29	27	14	28	1.95
74218940--74219093	82	1.9	81	87	4	229	29	27	14	27	1.95
74220903--74221055	40	3.8	40	85	5	195	26	21	27	24	1.99
74220920--74221081	79	2.1	79	83	6	204	25	20	27	25	1.99
74224477--74224770	39	7.4	39	78	6	311	32	20	12	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74226262--74226307	18	2.8	17	78	15	53	2	30	39	28	1.69
74227629--74227694	32	2.1	32	100	0	132	24	24	15	36	1.93
74233711--74233752	20	2.1	20	95	0	75	19	11	26	42	1.85
74234646--74234692	21	2.2	21	100	0	94	21	21	40	17	1.91
74238490--74238569	15	5.4	15	76	7	74	60	12	16	11	1.60
74238501--74238578	15	5.2	15	74	9	61	57	14	15	12	1.65
74241773--74241879	46	2.3	47	81	4	117	31	29	14	23	1.95
74246918--74247097	47	3.8	47	92	0	288	28	31	9	31	1.89
74251273--74251464	40	4.8	40	85	0	249	26	28	21	23	1.99
74252870--74253303	96	4.6	94	94	2	742	29	29	8	31	1.87
74252870--74253303	143	3.0	142	95	2	755	29	29	8	31	1.87
74252870--74253303	47	9.1	47	94	2	742	29	29	8	31	1.87
74259188--74259250	31	2.0	31	93	6	110	38	6	23	31	1.80
74262446--74262752	40	7.6	40	84	4	382	24	23	26	25	2.00
74262450--74262752	83	3.7	83	92	3	465	24	23	26	25	2.00
74262446--74262727	123	2.3	124	89	4	421	24	23	26	25	2.00
74267192--74267232	22	1.9	21	94	0	64	14	4	2	78	1.03
74267449--74267511	31	2.0	31	100	0	126	34	6	26	31	1.82
74285780--74285829	24	2.1	24	88	0	73	32	30	12	26	1.92
74296582--74296738	40	3.9	40	89	3	244	26	21	28	23	1.99
74296582--74296734	80	1.9	80	94	0	270	27	21	27	23	1.99
74296584--74296758	80	2.2	80	88	1	253	26	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74302361--74302457	31	3.1	31	76	8	90	23	28	25	21	1.99
74315782--74315903	62	2.0	61	95	1	217	36	10	15	36	1.82
74315995--74316399	204	2.0	204	98	0	774	29	21	18	30	1.97
74316349--74316572	40	5.6	40	84	6	292	25	26	23	25	2.00
74316349--74316572	83	2.8	80	87	5	292	25	26	23	25	2.00
74323427--74323998	40	14.2	40	97	1	1081	29	25	20	24	1.99
74335456--74335625	46	3.7	46	81	9	170	26	18	31	24	1.97
74336501--74336538	19	2.1	18	90	9	60	10	34	39	15	1.82
74337397--74337426	14	2.2	13	94	5	51	40	0	0	60	0.97
74339940--74340059	37	3.2	37	63	23	95	47	3	9	40	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276