Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  200  of  276  ( 33102 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66422523--66422577
12
4.3
12
76
13
56
61
1
21
14
1.42
66424664--66424760
30
3.2
30
76
2
106
28
25
15
29
1.96
66427909--66428014
50
2.1
50
98
0
203
35
21
17
24
1.95
66432575--66432753
38
4.7
38
93
0
286
30
25
22
21
1.99
66434894--66434984
46
2.0
46
88
0
137
37
10
8
42
1.71
66435089--66435183
49
1.9
49
85
4
129
36
11
11
40
1.78
66435405--66435625
115
1.9
115
99
0
433
29
25
10
34
1.89
66439171--66439417
45
5.6
45
88
4
342
24
29
22
23
1.99
66457616--66457700
42
2.0
42
95
0
152
35
12
18
32
1.89
66464894--66464946
27
2.0
27
96
0
97
41
15
3
39
1.65
66466595--66466621
11
2.5
11
100
0
54
33
29
11
25
1.91
66479449--66479619
93
1.8
93
96
0
315
28
29
21
21
1.98
66479444--66479616
46
3.7
46
80
13
219
28
28
21
21
1.98
66480039--66480098
30
2.0
30
90
0
93
30
25
8
36
1.85
66482066--66482171
28
3.8
28
88
0
158
29
32
15
23
1.95
66482066--66482171
56
1.9
56
94
0
185
29
32
15
23
1.95
66482743--66482781
21
1.9
20
84
5
51
51
23
2
23
1.61
66486156--66486268
33
3.5
33
85
4
140
38
12
22
27
1.90
66486261--66486408
31
4.8
31
84
0
188
29
16
25
28
1.97
66486261--66486408
62
2.4
62
85
2
208
29
16
25
28
1.97
66486465--66486529
27
2.4
27
89
0
103
40
13
24
21
1.90
66490833--66490935
42
2.4
43
82
7
122
28
24
19
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66494746--66494795
17
2.7
17
84
12
55
70
0
30
0
0.88
66496580--66496837
40
6.5
40
86
2
324
27
28
22
22
1.99
66511273--66511457
79
2.3
81
80
8
209
25
28
22
24
1.99
66511254--66511457
40
5.1
40
80
8
220
25
27
22
25
1.99
66516755--66516799
13
3.3
14
77
22
51
60
0
4
35
1.17
66516793--66516834
13
3.2
13
89
3
57
78
2
9
9
1.05
66516557--66517130
286
2.0
286
99
0
1139
51
4
13
30
1.63
66517041--66517085
13
3.3
14
77
22
51
60
0
4
35
1.17
66517079--66517116
13
2.8
14
88
4
51
78
2
7
10
1.04
66517138--66517180
20
2.4
19
82
17
56
72
0
27
0
0.85
66518457--66518503
20
2.3
20
92
0
76
19
40
29
10
1.85
66521931--66521964
17
2.0
17
88
0
50
82
0
17
0
0.67
66530767--66531024
40
6.5
40
93
2
396
22
23
28
25
1.99
66533420--66533500
43
1.9
42
85
12
112
29
27
17
25
1.97
66533411--66533521
42
2.6
43
78
7
120
27
26
19
26
1.99
66538990--66539092
3
34.0
3
80
9
120
29
3
2
64
1.26
66539152--66539194
4
10.5
4
80
5
50
16
0
4
79
0.90
66539144--66539194
12
4.1
12
87
7
66
15
1
3
78
0.99
66539144--66539183
13
3.2
13
85
7
55
15
2
2
80
0.93
66539151--66539348
21
9.2
21
66
16
77
23
4
3
69
1.21
66539144--66539194
25
2.0
25
84
0
66
15
1
3
78
0.99
66539296--66539344
18
2.8
18
78
12
57
24
0
2
73
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66539302--66539348
13
3.6
13
81
16
53
23
0
0
76
0.78
66539296--66539350
18
3.1
19
74
12
53
23
0
1
74
0.91
66542471--66542519
24
2.0
24
92
0
80
42
12
34
10
1.76
66544804--66544865
1
62.0
1
73
0
52
87
1
11
0
0.62
66544804--66544865
27
2.3
26
89
10
90
87
1
11
0
0.62
66544806--66544872
6
10.7
6
75
15
55
85
1
11
1
0.75
66544804--66544865
9
6.9
9
82
10
74
87
1
11
0
0.62
66544878--66545235
138
2.6
137
87
3
524
38
19
22
19
1.94
66546081--66546201
43
2.8
44
83
2
136
28
17
25
28
1.97
66546224--66546336
41
2.7
43
81
2
131
31
19
20
28
1.97
66546265--66546517
43
5.7
43
68
15
120
33
16
20
28
1.95
66546223--66546578
88
4.0
86
74
12
281
33
17
20
28
1.95
66546085--66546762
181
3.7
180
84
4
756
32
17
20
28
1.96
66546130--66546840
181
3.8
190
81
6
507
32
18
20
28
1.96
66546864--66547111
44
5.7
44
74
7
202
32
20
20
25
1.97
66546864--66547107
85
2.8
86
83
5
278
32
21
20
25
1.97
66547740--66547765
11
2.4
11
100
0
52
7
7
0
84
0.77
66548434--66548523
3
30.0
3
74
12
69
25
3
4
66
1.26
66548591--66548622
11
2.8
11
95
4
55
15
0
3
81
0.82
66548609--66548637
15
1.9
15
100
0
58
13
0
10
75
1.04
66548682--66548735
3
18.0
3
81
7
56
29
1
3
64
1.21
66548677--66548740
12
5.4
11
78
9
56
29
3
3
64
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66548762--66548797
5
6.8
5
90
9
54
2
16
0
80
0.83
66548762--66548797
16
2.2
16
95
0
63
2
16
0
80
0.83
66548762--66548797
11
3.3
11
92
7
56
2
16
0
80
0.83
66555767--66555796
15
1.9
16
93
6
53
40
26
0
33
1.57
66555968--66556122
42
3.7
42
84
3
186
28
25
16
29
1.97
66555968--66556122
85
1.8
84
82
6
197
28
25
16
29
1.97
66559450--66559633
46
4.0
47
78
12
218
22
20
28
28
1.99
66561369--66561446
40
2.0
40
97
0
147
30
28
19
21
1.97
66562146--66562196
26
2.0
26
96
0
93
37
27
0
35
1.57
66569649--66569726
40
2.0
40
94
0
138
29
29
19
21
1.98
66578740--66578800
30
2.0
30
83
0
77
31
22
8
37
1.84
66583677--66583736
20
3.0
21
85
4
79
21
25
18
35
1.96
66583946--66583980
13
2.7
13
95
0
61
31
0
5
62
1.18
66588401--66588452
10
5.2
10
81
9
54
19
23
17
40
1.91
66588394--66588439
21
2.3
20
85
7
67
21
26
19
32
1.97
66588394--66588452
21
3.0
19
80
9
66
20
25
16
37
1.93
66588662--66588696
13
2.7
13
95
0
61
31
0
5
62
1.18
66592503--66592602
50
2.0
50
100
0
200
24
22
30
24
1.99
66594012--66594109
27
3.5
28
90
2
135
26
13
28
31
1.94
66602807--66603005
41
4.9
39
79
12
174
27
28
21
22
1.99
66602806--66603005
81
2.5
81
82
6
244
27
28
21
22
1.99
66606161--66606332
93
1.8
93
94
0
308
27
30
21
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66606153--66606328
46
3.8
46
81
10
214
28
29
21
21
1.98
66622487--66622717
40
5.8
40
85
6
276
23
23
28
25
2.00
66630946--66630991
24
1.9
24
86
0
65
30
21
6
41
1.78
66633570--66633980
47
8.7
47
97
0
750
32
8
30
29
1.86
66634099--66634177
37
2.1
37
90
0
122
24
18
31
25
1.98
66644872--66645044
40
4.3
40
94
0
292
24
24
28
23
2.00
66649202--66649455
47
5.4
47
93
2
357
31
9
30
27
1.89
66649210--66649455
94
2.6
94
92
1
402
31
10
31
27
1.90
66653191--66653216
6
4.3
6
100
0
52
15
0
0
84
0.62
66659450--66659572
61
2.0
61
98
0
237
21
19
17
41
1.90
66666360--66666486
42
3.0
42
80
11
168
30
25
14
29
1.95
66672338--66672379
21
2.0
21
86
4
59
26
26
35
11
1.91
66673838--66674009
93
1.8
93
94
0
308
27
30
21
20
1.98
66673830--66674005
46
3.8
46
81
10
214
28
29
21
21
1.98
66678044--66678172
46
2.8
46
86
0
186
30
27
20
21
1.98
66679869--66680128
49
5.4
48
76
11
223
23
28
19
29
1.98
66679860--66680128
98
2.8
94
81
8
294
22
27
19
29
1.98
66689074--66689136
26
2.4
26
94
0
108
47
14
4
33
1.65
66705660--66705984
149
2.2
149
97
0
614
33
23
15
27
1.95
66706193--66706262
35
2.0
35
100
0
140
40
25
11
22
1.88
66710538--66710609
34
2.1
34
84
0
90
38
6
18
36
1.77
66711542--66711701
39
4.1
39
89
0
239
22
21
30
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66723009--66723087
39
2.1
39
83
11
101
35
1
3
59
1.24
66723007--66723094
39
2.2
40
76
9
92
36
1
3
59
1.22
66736584--66736644
29
2.1
29
100
0
122
39
19
16
24
1.92
66737729--66738168
220
2.0
220
100
0
880
37
12
14
35
1.84
66738412--66738453
7
6.0
7
97
0
75
59
0
26
14
1.35
66743941--66743973
10
3.2
11
87
12
52
30
0
9
60
1.27
66752884--66753237
178
2.0
179
96
0
647
33
11
18
36
1.87
66756633--66756736
37
2.7
38
78
11
104
26
15
22
35
1.94
66757650--66757679
15
2.0
15
100
0
60
6
60
6
26
1.47
66758375--66758436
28
2.2
28
97
0
115
30
4
3
61
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276