genome.fa.s12.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  158  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51295524--51295615	43	2.1	43	86	4	123	19	31	28	20	1.97
51297059--51297191	48	2.8	48	79	6	137	28	18	29	24	1.98
51300014--51300174	32	5.0	32	99	0	313	36	12	15	35	1.85
51311925--51312196	47	5.8	48	76	9	206	22	29	18	28	1.98
51317078--51317105	9	3.1	9	100	0	56	85	0	0	14	0.59
51319041--51319153	47	2.4	47	81	0	136	32	9	30	26	1.89
51319243--51319485	47	5.2	47	93	0	387	30	9	32	27	1.88
51319608--51319682	37	2.0	37	89	5	116	21	20	30	28	1.98
51322105--51322139	8	4.6	8	96	3	56	88	0	0	11	0.51
51322105--51322138	15	2.4	14	95	5	59	88	0	0	11	0.52
51322105--51322138	7	4.7	7	92	7	59	88	0	0	11	0.52
51324075--51324101	13	2.1	13	100	0	54	11	29	22	37	1.89
51326872--51326978	31	3.5	31	74	7	121	47	0	8	42	1.40
51326874--51327001	59	2.2	59	92	2	213	51	0	7	40	1.34
51328624--51328814	40	4.7	40	92	1	283	21	16	27	35	1.94
51338106--51338171	28	2.4	28	84	0	78	30	25	19	24	1.98
51348280--51348318	21	1.9	21	89	5	62	25	2	23	48	1.63
51352128--51352188	30	2.0	30	87	0	86	31	22	6	39	1.80
51356100--51356252	40	3.8	40	90	5	229	27	20	23	28	1.99
51366763--51366905	50	2.8	51	91	3	227	27	18	25	27	1.98
51367497--51367535	21	1.9	21	89	5	62	53	5	5	35	1.45
51372933--51373565	315	2.0	315	99	0	1257	33	9	16	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51377520--51377618	24	4.1	24	89	0	135	44	24	17	14	1.85
51380149--51380269	40	3.0	40	83	0	170	15	27	19	37	1.92
51385681--51385747	22	3.0	22	82	4	73	40	19	28	11	1.87
51394817--51394979	46	3.5	44	79	10	150	25	30	17	27	1.97
51396231--51396351	46	2.6	46	94	0	206	33	19	25	21	1.96
51404053--51404221	48	3.6	48	77	7	175	29	19	26	24	1.98
51404242--51404372	49	2.7	49	72	3	120	34	19	26	19	1.96
51404822--51404939	54	2.2	55	83	4	141	26	27	23	22	1.99
51405689--51406005	49	6.7	49	74	12	243	21	29	20	27	1.98
51405785--51405956	44	3.8	44	79	10	168	23	27	20	27	1.99
51405689--51406009	48	6.8	48	75	10	234	21	29	20	27	1.98
51405689--51406005	94	3.4	94	78	9	331	21	29	20	27	1.98
51405698--51405956	140	1.9	141	83	6	348	22	28	20	27	1.99
51413044--51413352	47	6.5	46	74	16	192	23	27	19	28	1.99
51413044--51413352	141	2.2	139	81	9	331	23	27	19	28	1.99
51413090--51413405	94	3.4	91	79	10	307	23	28	19	28	1.98
51415453--51415492	20	2.0	21	90	5	64	52	20	17	10	1.72
51425644--51425696	23	2.4	22	76	20	56	9	18	1	69	1.25
51434351--51434517	46	3.6	45	78	9	149	23	27	20	28	1.99
51440495--51440533	19	2.1	19	95	0	69	23	25	0	51	1.49
51455113--51455178	15	4.3	15	83	14	66	77	0	4	18	0.94
51455118--51455180	20	3.0	20	78	17	74	77	0	3	19	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51455122--51455180	27	2.2	27	85	11	77	77	0	3	18	0.90
51455118--51455176	10	5.8	10	75	16	59	77	0	3	18	0.90
51455113--51455156	8	5.7	7	84	12	52	77	0	4	18	0.94
51455859--51455908	20	2.5	20	90	6	75	16	46	24	14	1.83
51458568--51459037	94	5.0	94	98	0	904	30	10	19	39	1.85
51459066--51459129	24	2.7	24	87	4	85	20	15	31	32	1.94
51466578--51466829	94	2.7	94	96	0	468	30	11	18	39	1.86
51466864--51466927	24	2.7	24	87	4	85	20	15	31	32	1.94
51469777--51470001	40	5.7	40	85	5	269	26	27	21	24	2.00
51469777--51470001	119	1.9	120	82	6	287	26	27	21	24	2.00
51474814--51474957	39	3.7	40	81	11	156	24	27	22	25	2.00
51482677--51482768	39	2.3	39	88	5	132	25	28	22	23	2.00
51482658--51482821	40	4.1	40	80	10	176	24	27	23	25	2.00
51490016--51490073	30	1.9	30	82	6	73	15	24	37	22	1.93
51491418--51491461	22	2.0	22	90	0	70	18	27	13	40	1.88
51494169--51494402	70	3.3	70	75	5	195	24	19	20	35	1.95
51519081--51519306	40	5.7	40	90	2	321	24	22	27	25	1.99
51523539--51523756	84	2.6	83	90	1	328	24	27	19	28	1.98
51523562--51523692	41	3.1	41	61	12	95	23	29	21	25	1.99
51523579--51523709	41	3.1	41	62	12	95	25	25	22	26	2.00
51529623--51529660	19	2.0	20	85	15	53	39	23	0	36	1.55
51530387--51530446	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51535518--51535780	48	5.6	48	83	5	268	22	25	20	31	1.98
51535370--51535777	142	2.9	141	78	7	364	23	25	20	30	1.99
51540557--51540582	12	2.2	12	100	0	52	57	15	11	15	1.65
51543768--51543802	18	2.0	17	88	5	52	14	34	0	51	1.42
51545738--51545798	30	2.0	30	87	0	86	31	22	6	39	1.80
51548460--51548521	27	2.2	29	80	13	76	25	17	17	38	1.92
51551318--51551536	79	2.8	78	84	0	285	31	21	14	32	1.93
51551514--51551651	40	3.5	40	78	0	150	38	20	10	30	1.87
51553280--51553357	28	2.8	28	77	14	81	53	2	0	43	1.14
51559441--51559528	46	1.9	46	92	0	149	26	19	29	25	1.98
51559451--51559568	46	2.5	46	85	8	141	27	17	28	25	1.98
51562439--51562499	30	2.0	30	87	0	86	29	24	8	37	1.84
51579559--51579652	26	3.6	27	84	4	102	26	17	19	37	1.93
51579579--51580076	27	18.6	27	83	2	526	29	10	20	38	1.86
51579605--51580077	160	2.9	159	84	3	567	30	10	20	39	1.86
51581287--51581366	25	3.2	25	82	8	99	25	18	21	35	1.96
51581297--51581366	25	2.8	25	86	2	104	22	21	24	31	1.98
51581432--51581468	10	3.7	10	92	7	58	32	18	10	37	1.86
51581398--51581462	21	3.0	21	81	2	67	32	18	10	38	1.85
51584135--51584204	35	2.0	35	97	0	131	32	15	11	40	1.83
51588314--51588366	27	2.0	27	88	0	79	28	13	20	37	1.90
51605415--51605475	30	2.0	30	83	0	77	31	22	8	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51606687--51606711	13	1.9	13	100	0	50	32	16	16	36	1.90
51608026--51608402	200	1.9	200	100	0	754	32	10	20	35	1.87
51608402--51608830	47	9.1	47	92	3	700	32	8	29	29	1.87
51609827--51610179	48	7.4	48	93	1	593	34	6	27	30	1.82
51609826--51610185	142	2.5	142	94	0	630	34	6	28	31	1.82
51618465--51618601	68	2.0	68	98	0	265	33	18	13	35	1.89
51619259--51619435	87	2.0	87	98	0	345	37	23	9	30	1.86
51621238--51621324	39	2.2	39	91	0	147	29	28	21	19	1.98
51628632--51628774	74	1.9	74	98	0	277	45	13	6	33	1.71
51628939--51629025	39	2.2	39	95	0	156	29	27	20	21	1.98
51630746--51630853	26	4.2	26	95	0	198	31	6	25	36	1.82
51632326--51632378	26	2.0	26	82	7	63	41	20	11	26	1.86
51639001--51639177	40	4.4	40	83	4	216	26	27	22	24	2.00
51646849--51648206	47	28.6	47	98	0	2275	29	28	8	34	1.86
51650558--51650658	39	2.6	39	90	7	152	23	21	30	23	1.99
51657599--51657777	88	2.0	88	94	0	313	37	14	19	28	1.91
51663576--51663641	33	2.0	33	100	0	132	39	6	9	45	1.61
51665938--51665985	25	1.9	25	87	8	71	37	14	4	43	1.65
51680832--51680862	5	6.0	5	92	7	53	3	58	38	0	1.15
51680886--51680918	17	2.1	16	88	11	50	30	0	0	69	0.88
51680965--51681023	21	2.8	22	80	7	61	22	0	8	69	1.15
51680939--51681004	33	1.9	35	84	6	91	21	0	12	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51680994--51681042	26	2.0	24	88	8	71	30	0	6	63	1.19
51682517--51682541	12	2.1	12	100	0	50	56	0	0	44	0.99
51688880--51688935	21	2.7	21	91	0	94	26	30	32	10	1.90
51690286--51690409	49	2.5	49	82	2	142	23	26	20	29	1.99
51690432--51690646	46	4.6	48	82	6	237	21	26	20	32	1.98
51690432--51690646	94	2.3	92	84	6	272	21	26	20	32	1.98
51699081--51699137	24	2.3	24	76	8	62	17	26	19	36	1.94
51705591--51705652	32	1.9	32	90	0	97	43	9	14	32	1.78
51709201--51709450	50	5.0	50	77	3	252	26	17	26	30	1.97
51709206--51709387	101	1.8	101	90	2	294	26	19	25	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276