genome.fa.s12.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  139  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45258939--45259020	25	3.3	24	86	8	103	24	23	21	30	1.99
45258952--45259020	25	2.8	25	93	4	113	24	23	24	27	2.00
45259806--45259883	27	2.9	27	79	11	88	20	20	21	37	1.95
45259872--45260000	54	2.4	54	79	10	147	28	8	20	41	1.82
45259902--45260126	27	8.3	27	74	7	152	31	8	22	37	1.85
45262225--45262307	31	2.7	31	90	3	134	26	25	18	30	1.98
45262527--45262596	25	2.8	25	93	0	113	25	24	24	25	2.00
45262953--45263023	25	2.8	25	91	0	106	22	22	25	29	1.99
45262471--45263321	425	2.0	426	96	0	1551	31	23	13	30	1.94
45263956--45264041	27	3.1	27	76	17	95	34	9	16	39	1.80
45264019--45264142	27	4.6	27	80	6	135	28	7	21	42	1.79
45264178--45264265	27	3.3	27	88	0	122	39	4	25	30	1.75
45264164--45264290	54	2.4	53	76	11	132	36	7	23	32	1.84
45271499--45273490	996	2.0	996	100	0	3984	29	15	18	36	1.92
45274135--45274330	27	7.3	27	81	6	227	27	19	17	35	1.94
45274135--45274330	54	3.6	54	86	4	270	27	19	17	35	1.94
45274135--45274357	54	4.1	53	83	6	188	27	17	18	36	1.94
45274137--45274357	81	2.7	80	79	8	207	27	18	17	36	1.93
45274317--45274375	27	2.2	27	81	6	66	32	5	18	44	1.72
45277627--45277811	79	2.3	82	84	7	238	25	27	22	24	2.00
45277608--45277811	40	5.1	40	82	8	238	25	27	22	25	2.00
45280566--45280599	16	2.1	16	94	0	59	41	14	8	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45281052--45281109	30	1.9	30	86	6	82	20	31	29	18	1.97
45281052--45281132	30	2.7	30	79	7	76	17	29	33	19	1.95
45282966--45283022	5	10.2	5	80	19	60	77	3	0	19	0.92
45282966--45283022	12	5.1	11	87	8	80	77	3	0	19	0.92
45284611--45284645	12	2.8	13	91	4	54	82	0	0	17	0.66
45284611--45284645	17	2.0	18	94	5	63	82	0	0	17	0.66
45297540--45297692	48	3.2	47	81	3	189	28	23	21	26	1.99
45307333--45307387	20	2.8	20	88	0	74	14	27	36	21	1.93
45309376--45309508	48	2.8	48	91	0	212	25	24	18	31	1.97
45314649--45314764	50	2.3	50	79	2	126	25	16	18	39	1.91
45316373--45316441	2	34.5	2	100	0	138	50	49	0	0	1.00
45319889--45320066	27	6.6	27	83	3	205	26	15	28	29	1.96
45319890--45320045	82	1.9	81	88	3	233	26	15	28	29	1.96
45319886--45320066	82	2.2	81	83	2	229	27	15	27	29	1.96
45327952--45328129	27	6.6	27	83	3	205	26	15	28	29	1.96
45327953--45328108	82	1.9	81	88	3	233	26	15	28	29	1.96
45327949--45328129	82	2.2	81	83	2	229	27	15	27	29	1.96
45338462--45338535	36	2.1	36	97	0	139	29	14	16	39	1.88
45341851--45341883	5	6.6	5	92	0	57	18	0	3	78	0.87
45348721--45349066	173	2.0	173	100	0	692	33	13	15	37	1.86
45352727--45352801	37	2.0	37	94	0	132	29	10	21	38	1.87
45360445--45360545	51	2.0	51	96	0	184	40	25	17	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45362960--45363343	50	7.7	50	92	3	564	27	21	28	22	1.99
45372512--45372640	49	2.7	46	84	10	147	39	18	24	17	1.91
45372515--45372640	22	5.3	24	82	10	145	38	19	24	17	1.92
45379726--45379851	22	5.3	24	81	10	120	38	19	25	15	1.92
45379770--45379861	25	3.7	26	75	10	75	36	20	26	16	1.93
45384338--45384382	23	1.9	24	86	4	65	15	8	4	71	1.28
45387297--45387517	25	8.6	25	69	17	114	38	23	13	24	1.91
45387375--45387493	26	4.6	26	73	12	93	37	25	12	24	1.90
45387290--45387472	50	3.6	51	87	2	217	39	24	13	22	1.90
45387375--45387519	78	1.9	77	85	7	204	37	24	13	25	1.91
45393075--45393109	6	5.7	6	96	3	61	71	14	0	14	1.15
45396114--45396160	21	2.3	21	85	3	60	48	17	0	34	1.47
45397964--45398009	24	2.0	24	87	12	69	21	19	26	32	1.97
45400953--45401070	39	3.0	39	91	2	175	16	33	16	33	1.92
45400978--45401039	20	3.2	20	73	13	74	14	40	17	27	1.89
45400936--45401050	19	5.9	20	70	12	78	14	33	18	33	1.91
45403093--45403141	10	4.8	10	85	11	55	32	0	4	63	1.13
45411307--45411340	18	1.9	18	88	5	52	73	8	5	11	1.24
45422445--45422574	63	2.1	63	98	0	251	44	8	26	20	1.80
45423876--45423999	29	4.2	29	69	13	72	36	16	20	25	1.94
45423959--45424100	61	2.3	60	82	5	169	34	16	21	26	1.95
45423888--45424063	90	2.0	90	85	4	239	36	15	21	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45423966--45424100	60	2.2	61	85	1	173	33	17	21	27	1.96
45433475--45433504	12	2.5	12	94	0	51	6	30	40	23	1.80
45436438--45436485	23	2.1	23	100	0	96	39	16	12	31	1.86
45438961--45439153	50	3.7	50	80	4	197	26	21	29	22	1.99
45439416--45439454	20	2.0	20	89	0	60	53	2	25	17	1.56
45445286--45445314	15	1.9	15	100	0	58	27	13	0	58	1.36
45445602--45445792	50	3.7	50	81	6	204	26	22	28	22	1.99
45446057--45446095	20	2.0	20	89	0	60	53	2	25	17	1.56
45449379--45449556	27	6.6	27	85	3	214	30	28	14	26	1.95
45449400--45449555	82	1.9	81	89	3	242	30	28	14	26	1.95
45457556--45457733	27	6.6	27	85	3	214	30	28	14	26	1.95
45457577--45457732	82	1.9	81	89	3	242	30	28	14	26	1.95
45464214--45464256	23	1.9	23	85	4	61	16	2	27	53	1.55
45468368--45468392	3	8.3	3	100	0	50	0	36	0	64	0.94
45469583--45469651	21	3.2	20	69	23	59	42	1	1	55	1.18
45469586--45469651	23	3.0	22	72	18	73	43	1	1	53	1.19
45472753--45472813	30	2.1	29	87	9	88	22	37	0	39	1.55
45474431--45474579	43	3.5	42	75	9	142	22	18	26	32	1.97
45474423--45474579	86	1.8	86	85	9	223	22	18	26	32	1.97
45474423--45474595	85	2.0	86	81	7	201	23	17	26	33	1.96
45475102--45475148	25	1.9	24	83	12	60	14	10	4	70	1.31
45479667--45479739	30	2.4	30	81	0	83	15	27	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45481640--45481697	29	2.0	29	100	0	116	17	6	3	72	1.21
45483304--45483390	43	2.0	43	88	4	131	34	14	21	28	1.94
45501961--45502017	19	3.0	20	87	10	75	36	0	5	57	1.21
45502410--45502467	23	2.5	23	81	13	66	68	5	1	24	1.19
45507028--45507094	20	3.4	19	78	13	73	38	10	25	25	1.87
45510915--45511092	27	6.6	27	84	3	205	29	28	15	26	1.96
45510936--45511091	82	1.9	81	88	3	233	29	28	15	26	1.96
45524996--45525034	14	2.6	16	88	11	57	48	0	0	51	1.00
45528567--45528809	50	4.7	53	74	8	182	26	20	27	24	1.99
45529277--45529324	24	2.0	24	100	0	96	12	8	29	50	1.69
45537605--45537633	2	14.5	2	100	0	58	48	0	0	51	1.00
45547511--45547554	2	22.0	2	90	0	70	4	47	0	47	1.22
45552763--45552839	6	12.8	6	88	0	82	72	7	1	18	1.15
45552751--45552793	18	2.5	17	92	7	70	72	4	4	18	1.20
45554534--45554600	5	13.0	5	77	14	66	73	4	1	20	1.09
45560866--45560895	12	2.5	12	100	0	60	20	10	20	50	1.76
45566019--45566314	43	6.9	43	81	6	296	31	30	16	21	1.95
45566637--45566726	43	2.1	42	84	8	119	45	10	8	35	1.69
45567743--45567797	25	2.2	26	80	9	69	50	16	3	29	1.62
45571193--45571260	34	2.0	34	100	0	136	29	5	14	50	1.67
45572119--45572147	14	2.0	15	93	6	51	34	48	0	17	1.47
45572190--45572261	33	2.2	33	84	0	99	34	41	6	16	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45572893--45572936	22	2.0	22	100	0	88	54	4	13	27	1.58
45573154--45573515	41	8.9	41	86	2	424	28	26	23	21	1.99
45573551--45573645	39	2.4	39	86	6	122	20	18	21	40	1.92
45585542--45585652	50	2.2	49	87	6	152	21	27	20	30	1.98
45585688--45586063	50	7.7	50	87	4	523	21	31	21	25	1.98
45585484--45585820	168	2.0	168	89	0	521	22	27	20	29	1.98
45585957--45586041	43	2.0	43	100	0	170	22	32	21	23	1.98
45597535--45597578	23	2.0	22	81	4	52	72	2	18	6	1.17
45600775--45600883	51	2.1	51	98	0	209	43	15	11	30	1.81
45605807--45605879	34	2.1	34	82	5	85	30	20	24	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276