genome.fa.s12.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  153  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49754746--49754797	21	2.4	22	80	6	61	53	11	0	34	1.37
49754764--49754847	37	2.2	37	81	6	89	59	5	1	33	1.29
49755266--49755400	9	14.6	9	67	17	62	36	4	2	56	1.35
49758788--49758816	14	2.1	14	100	0	58	41	13	24	20	1.89
49758879--49758979	52	1.9	52	93	0	175	23	15	27	32	1.95
49760754--49760783	2	15.0	2	92	0	51	50	46	0	3	1.18
49766833--49766911	37	2.1	37	86	4	106	26	30	17	25	1.97
49767030--49767612	47	12.4	47	91	0	905	29	28	9	32	1.89
49773863--49773922	27	2.3	27	88	2	86	21	25	20	33	1.97
49777796--49777852	25	2.3	24	84	6	78	35	3	36	24	1.73
49779144--49779255	27	4.2	26	82	7	125	16	23	22	37	1.94
49779147--49779253	54	2.0	54	87	3	153	17	23	20	38	1.93
49780530--49780682	39	3.9	39	90	0	243	24	19	27	28	1.99
49780530--49780710	78	2.3	78	86	1	247	24	20	27	27	1.99
49790189--49790404	47	4.7	47	75	12	144	24	29	21	24	1.99
49790230--49790401	47	3.7	47	74	11	172	22	31	22	23	1.98
49790139--49790404	94	2.9	91	77	6	266	23	28	21	26	1.99
49790189--49790445	94	2.8	94	80	5	245	24	29	20	25	1.99
49791714--49791742	14	2.0	15	93	6	51	27	3	20	48	1.66
49792842--49792928	43	2.0	42	82	6	104	27	18	24	29	1.98
49794032--49794082	26	2.0	26	96	0	93	49	3	15	31	1.63
49797527--49797704	45	4.0	44	80	5	155	26	15	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49800266--49800375	42	2.6	43	79	4	116	29	20	20	30	1.97
49805523--49805711	40	4.7	40	92	2	317	25	26	22	25	2.00
49805490--49805711	80	2.8	79	90	3	331	24	26	22	26	2.00
49808071--49808219	27	5.4	27	92	3	226	28	12	28	30	1.93
49808071--49808219	55	2.7	55	92	0	235	28	12	28	30	1.93
49812337--49812386	25	2.0	25	92	0	82	24	16	28	32	1.96
49814350--49814483	44	3.1	43	75	12	114	23	14	25	35	1.94
49814380--49814494	42	2.7	42	76	10	117	26	14	23	34	1.94
49819523--49819556	10	3.3	10	91	4	50	47	0	0	52	1.00
49822273--49822334	30	2.1	30	96	0	115	27	16	20	35	1.94
49837819--49837890	29	2.5	29	95	2	128	29	12	26	31	1.93
49841920--49841999	28	2.8	28	83	7	90	26	32	15	26	1.95
49845892--49845971	29	2.8	28	83	7	108	28	35	13	22	1.92
49845892--49845971	28	2.8	28	83	7	108	28	35	13	22	1.92
49854076--49854172	45	2.2	45	81	3	115	38	16	19	25	1.92
49854196--49854306	46	2.5	45	77	2	125	46	13	21	18	1.83
49855178--49855251	20	3.7	20	98	0	139	52	4	22	20	1.63
49859293--49859335	23	2.0	23	81	9	54	44	16	6	32	1.74
49861347--49861387	21	1.9	22	85	5	57	48	9	0	41	1.36
49861546--49861574	14	2.0	15	93	6	51	51	20	0	27	1.47
49863997--49864142	29	5.1	29	81	2	143	28	28	14	28	1.95
49874826--49874958	29	4.7	29	86	1	162	27	30	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49877956--49878226	48	5.7	47	75	7	253	27	18	28	26	1.98
49877945--49878228	95	3.0	95	86	4	378	28	17	27	26	1.98
49880148--49880186	16	2.4	17	91	4	62	48	35	5	10	1.59
49882118--49882262	40	3.6	40	85	4	193	26	24	25	23	2.00
49889014--49889048	9	3.9	9	88	0	52	71	11	8	8	1.31
49891702--49891749	23	2.1	23	100	0	96	33	4	27	35	1.76
49896189--49896295	29	3.8	28	74	10	92	26	13	32	28	1.93
49897346--49897379	18	1.9	18	88	5	52	41	20	8	29	1.82
49899751--49899833	40	2.1	40	88	4	123	30	12	21	36	1.90
49903107--49903145	20	2.0	20	89	0	60	25	7	20	46	1.77
49904681--49904715	16	2.2	16	100	0	70	45	0	20	34	1.51
49910929--49910967	20	2.0	20	89	0	60	25	7	20	46	1.77
49913593--49913872	48	5.9	48	75	0	265	27	17	28	26	1.97
49913590--49913874	96	3.0	96	86	1	419	28	17	27	26	1.98
49913590--49913855	95	2.8	96	88	1	381	28	16	27	26	1.97
49935329--49935453	63	2.0	63	95	0	223	28	8	20	41	1.82
49936362--49936440	42	1.9	42	85	10	110	17	36	21	24	1.94
49937504--49937778	46	5.8	46	74	10	161	24	27	20	27	1.99
49943944--49943983	21	2.0	20	85	5	53	22	22	37	17	1.94
49944460--49944506	22	2.1	22	100	0	94	46	19	8	25	1.77
49945171--49945339	46	3.6	47	77	12	145	25	28	17	28	1.97
49945269--49945379	46	2.4	47	83	6	127	25	29	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49957547--49957578	8	4.0	8	91	0	55	46	25	25	3	1.67
49957969--49958042	27	2.7	27	79	6	87	18	25	24	31	1.98
49958947--49959016	29	2.5	28	81	6	79	31	18	21	28	1.97
49966620--49966692	29	2.6	28	84	6	94	27	16	28	27	1.97
49966620--49966690	28	2.5	29	86	6	92	28	16	26	28	1.97
49968109--49968147	19	2.1	19	85	0	51	15	5	7	71	1.26
49968732--49968765	10	3.3	10	84	8	50	29	8	8	52	1.62
49975392--49975481	28	3.2	27	78	7	92	20	24	22	33	1.97
49975945--49975983	19	2.1	19	85	0	51	15	5	7	71	1.26
49981073--49981210	57	2.4	56	82	1	195	34	23	14	26	1.94
49991137--49991265	65	2.0	65	96	0	240	17	22	22	37	1.93
49995478--49995513	14	2.5	15	86	13	58	38	0	0	61	0.96
49997578--49997824	27	9.2	27	85	0	289	31	21	6	40	1.78
49997551--49997824	107	2.5	107	82	2	316	31	21	6	39	1.80
49998060--49998111	27	2.0	26	84	3	68	17	26	21	34	1.95
49998346--49998405	31	1.9	31	86	0	84	21	20	16	41	1.90
49998379--49998456	6	12.8	6	80	12	88	16	19	14	50	1.79
49998356--49998435	37	2.2	37	90	0	124	17	20	15	47	1.83
49998369--49998447	37	2.1	37	90	0	122	16	21	12	49	1.79
50006861--50006907	22	2.1	22	84	7	60	38	12	17	31	1.87
50007134--50007355	40	5.6	40	90	2	333	27	26	22	23	2.00
50009700--50009774	7	10.6	7	85	2	105	48	36	0	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50014076--50014147	36	2.0	36	100	0	144	38	13	19	27	1.90
50014875--50015040	43	3.9	43	85	7	214	28	20	27	22	1.99
50014881--50015040	86	1.9	85	89	5	252	28	21	27	22	1.99
50020977--50021050	37	2.0	37	100	0	148	27	5	27	40	1.78
50021167--50021527	40	9.0	40	88	0	542	21	22	29	25	1.99
50021165--50021527	80	4.5	80	96	0	645	21	22	29	25	1.99
50021687--50021741	25	2.2	25	90	6	85	29	12	30	27	1.93
50022226--50022497	136	2.0	135	89	2	411	29	14	22	32	1.94
50027308--50027386	25	3.3	25	61	10	65	32	5	29	32	1.79
50027292--50027679	49	8.1	49	93	3	614	31	7	30	30	1.85
50027292--50027679	96	4.0	96	93	2	645	31	7	30	30	1.85
50027798--50027876	37	2.1	37	90	0	122	24	18	31	25	1.98
50031834--50031873	21	1.9	21	84	0	53	37	0	2	60	1.11
50032376--50032717	38	8.0	38	71	20	171	30	23	15	30	1.95
50032416--50032687	48	5.9	48	79	9	316	30	22	15	30	1.95
50032378--50032717	133	2.6	133	95	0	599	30	23	15	30	1.95
50035688--50035734	15	3.1	15	84	0	58	17	14	17	51	1.77
50037435--50037619	40	4.7	40	81	9	193	24	22	27	25	2.00
50037490--50037652	79	2.1	79	82	6	197	26	20	28	24	1.99
50042144--50042393	55	4.7	53	81	7	253	34	18	25	22	1.96
50042146--50042395	108	2.4	110	82	9	322	34	18	25	22	1.96
50042589--50042619	16	1.9	16	93	0	53	41	3	22	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50043594--50043843	136	1.8	136	96	0	464	25	18	22	34	1.96
50044219--50044347	48	2.7	48	89	1	188	29	15	23	31	1.95
50049320--50049444	62	2.0	62	95	0	223	20	13	21	44	1.86
50053222--50053309	43	2.0	43	95	0	158	21	27	10	40	1.85
50053731--50053790	30	2.0	30	93	0	102	28	8	31	31	1.86
50054159--50054233	27	2.8	27	84	8	98	44	22	5	28	1.75
50054271--50054322	27	1.9	27	92	0	86	32	13	21	32	1.92
50054593--50054774	50	3.6	50	88	0	256	24	21	29	24	1.99
50060311--50060633	50	6.8	48	73	12	220	28	20	29	21	1.98
50076021--50076316	39	7.5	39	89	1	414	19	21	29	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276