genome.fa.s12.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  101  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31928560--31928744	79	2.3	81	82	7	209	25	23	27	24	2.00
31928561--31928744	40	4.6	39	80	9	185	25	23	27	23	2.00
31928613--31928777	79	2.1	79	82	6	192	26	21	26	24	2.00
31936132--31936243	43	2.6	43	76	10	129	30	27	16	25	1.97
31937448--31937566	25	4.8	25	80	0	94	40	27	13	18	1.88
31937453--31937566	50	2.3	50	82	0	138	40	28	13	18	1.88
31937666--31937727	22	2.8	22	78	9	72	32	20	24	22	1.98
31938219--31938421	54	3.8	54	81	5	198	30	8	19	41	1.82
31938270--31938397	27	4.7	27	87	3	161	28	8	21	41	1.82
31938196--31938413	27	8.1	27	80	3	154	31	10	18	40	1.84
31941246--31941313	25	2.7	25	81	0	82	42	27	11	17	1.84
31941457--31941521	22	3.0	21	76	13	69	33	23	23	20	1.97
31941666--31941785	41	2.9	41	82	2	134	27	29	19	24	1.98
31942031--31942307	27	10.4	25	77	9	178	33	7	18	40	1.79
31942060--31942243	54	3.4	54	83	7	214	30	6	18	44	1.75
31942031--31942243	81	2.6	81	82	2	223	32	7	17	42	1.76
31942249--31942307	26	2.3	26	90	0	91	32	8	22	37	1.84
31945183--31945268	43	2.0	43	90	0	136	22	10	20	46	1.81
31947649--31947725	38	2.0	38	97	0	145	25	10	19	44	1.83
31953484--31953526	21	2.1	20	83	12	52	34	23	20	20	1.96
31954792--31954830	19	2.1	19	85	9	53	51	2	15	30	1.57
31955289--31955509	94	2.3	94	98	0	424	29	14	28	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31955292--31955559	47	5.7	45	72	18	201	28	15	29	26	1.96
31955583--31955609	12	2.2	12	100	0	54	18	25	33	22	1.97
31960391--31960565	46	3.8	45	75	7	163	28	28	20	22	1.99
31960399--31960569	93	1.8	93	88	0	261	28	28	21	22	1.99
31962540--31962799	130	2.0	130	91	0	421	35	14	14	35	1.87
31968235--31968282	20	2.3	22	75	13	57	4	22	18	54	1.61
31970139--31970196	26	2.3	25	85	11	75	63	1	10	24	1.35
31974050--31974100	13	3.9	13	84	0	66	33	9	21	35	1.86
31974271--31974332	30	2.1	29	81	6	70	48	1	1	48	1.21
31974319--31974399	33	2.7	30	76	16	78	50	1	1	46	1.17
31974701--31974863	49	3.3	49	80	6	202	31	25	17	25	1.97
31980646--31980760	44	2.6	44	86	4	135	26	16	24	33	1.96
31985582--31985812	67	3.4	67	99	0	453	31	18	30	19	1.96
31999219--31999303	44	1.9	44	95	0	152	34	11	29	24	1.91
31999222--31999290	21	3.2	21	64	8	57	34	13	27	24	1.92
32000249--32000327	39	2.0	39	92	0	131	25	8	25	40	1.84
32000902--32000977	38	2.0	38	100	0	152	28	26	18	26	1.98
32003736--32003919	40	4.6	40	83	6	205	23	21	27	27	1.99
32003736--32003916	80	2.3	81	84	9	230	23	21	27	27	1.99
32003948--32004065	39	3.2	38	63	18	95	29	21	26	22	1.99
32003925--32004067	72	2.0	72	98	0	277	29	20	25	24	1.99
32009174--32009679	253	2.0	253	100	0	1012	23	18	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32011359--32011543	40	4.6	39	82	7	180	24	22	27	25	2.00
32011359--32011543	79	2.3	81	82	9	220	24	22	27	25	2.00
32011412--32011576	79	2.1	79	80	8	176	27	20	27	25	1.99
32013106--32013197	28	3.3	27	73	13	87	44	16	18	20	1.87
32014718--32015283	281	2.0	281	95	0	1008	30	16	16	36	1.92
32021606--32021785	27	6.7	27	77	6	159	27	21	14	36	1.92
32021607--32021785	81	2.2	80	84	3	216	26	21	14	36	1.92
32027015--32027134	56	2.1	56	96	0	222	45	9	22	23	1.81
32028312--32028416	39	2.6	39	85	8	115	24	22	26	25	2.00
32028325--32028416	39	2.3	40	88	5	134	23	22	27	26	2.00
32028273--32028416	40	3.6	39	78	12	134	24	23	27	25	2.00
32028272--32028422	79	1.9	80	82	6	191	25	23	27	24	2.00
32033911--32033942	16	2.1	16	94	5	57	78	0	15	6	0.95
32037506--32037583	40	2.0	40	86	0	111	19	11	32	37	1.87
32069019--32069063	23	2.0	23	82	8	56	66	0	4	28	1.11
32069459--32069495	15	2.4	16	90	4	58	24	2	0	72	0.97
32073493--32073526	16	2.1	16	88	0	50	50	14	17	17	1.79
32076326--32076366	21	2.0	21	90	0	64	29	21	29	19	1.98
32078272--32078305	16	2.1	16	88	0	50	50	14	17	17	1.79
32081249--32081282	10	3.3	10	88	8	50	44	0	0	55	0.99
32086360--32086396	19	1.9	19	100	0	74	21	10	10	56	1.64
32088602--32088643	19	2.2	19	95	0	75	33	7	21	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32089392--32089436	11	3.9	11	80	11	54	35	0	2	62	1.08
32091081--32091214	54	2.4	54	84	9	155	26	18	23	30	1.98
32091254--32091511	46	5.6	46	88	1	349	40	14	25	19	1.90
32091254--32091511	138	1.9	137	88	0	390	40	14	25	19	1.90
32091808--32091840	17	2.0	17	94	5	59	48	0	15	36	1.45
32100304--32100389	5	17.6	5	81	13	108	22	1	0	76	0.85
32100310--32100385	40	1.9	40	97	0	143	22	1	0	76	0.86
32101982--32102023	10	4.2	10	87	9	50	19	11	2	66	1.34
32102747--32102780	17	1.9	18	94	5	61	26	11	5	55	1.58
32103815--32103922	40	2.7	38	86	8	144	22	23	24	30	1.99
32110561--32110621	29	2.1	29	96	0	113	44	29	9	16	1.80
32114221--32114268	22	2.3	21	85	7	62	8	14	4	72	1.23
32128409--32128554	75	2.0	74	88	1	220	32	16	17	32	1.93
32128490--32129175	89	7.8	88	84	8	866	26	16	18	37	1.92
32129099--32129506	73	5.6	73	99	0	807	27	21	21	28	1.99
32129525--32129556	14	2.3	14	94	0	55	18	15	6	59	1.57
32129463--32129658	103	1.9	101	85	2	266	25	17	15	41	1.89
32129628--32129658	13	2.4	13	94	0	53	12	9	6	70	1.31
32129566--32130126	86	6.5	86	97	1	1007	26	18	19	36	1.94
32132263--32132393	66	2.0	66	98	0	253	35	19	9	35	1.85
32134568--32134600	17	1.9	17	88	11	50	45	0	6	48	1.27
32136211--32136267	29	2.0	29	82	3	71	52	0	3	43	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32136225--32136284	29	2.0	29	83	3	75	51	0	6	41	1.28
32146677--32146922	134	1.8	132	88	5	379	36	16	11	34	1.85
32147781--32147862	41	2.0	41	100	0	164	36	19	0	43	1.51
32147861--32147905	22	2.0	22	83	16	56	13	51	0	35	1.41
32147914--32147961	20	2.4	20	100	0	96	22	22	0	54	1.45
32152406--32152561	2	78.0	2	80	0	123	3	58	0	37	1.14
32152415--32152563	58	2.6	58	87	0	208	3	60	0	36	1.13
32152693--32152752	31	2.0	30	83	9	77	60	1	1	36	1.17
32152733--32152776	19	2.2	20	80	11	56	68	2	4	25	1.20
32155350--32155387	20	1.9	19	89	5	58	7	15	0	76	1.01
32157213--32158023	54	15.0	54	99	0	1613	29	31	7	31	1.85
32159519--32159557	20	2.0	20	94	0	69	28	12	15	43	1.83
32162265--32162311	20	2.3	21	82	10	62	72	6	4	17	1.22
32163136--32163165	15	2.0	15	93	0	51	50	0	10	40	1.36
32163132--32163194	27	2.3	26	76	10	63	38	0	11	50	1.38
32163190--32163221	10	3.3	10	95	4	57	31	6	0	62	1.20
32163946--32163979	18	1.9	18	94	5	61	26	11	5	55	1.58
32164137--32164182	12	3.8	12	97	0	74	23	13	0	63	1.30
32167584--32167661	41	1.9	41	83	0	102	24	10	14	51	1.73
32180539--32180589	22	2.3	22	89	0	75	33	1	15	49	1.56
32190739--32190767	2	14.5	2	100	0	58	48	0	0	51	1.00
32211753--32212650	40	22.5	40	99	0	1737	22	22	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32219105--32219142	18	2.1	18	90	0	58	42	13	5	39	1.66
32221400--32221430	13	2.4	13	94	0	53	61	6	3	29	1.37
32227111--32227164	23	2.3	23	81	6	65	20	14	20	44	1.86
32230072--32230166	35	2.8	33	80	13	104	26	6	20	47	1.73
32230158--32230474	79	4.0	79	99	0	618	28	10	16	45	1.80
32237346--32237389	20	2.3	19	88	11	63	61	0	4	34	1.16
32237462--32237506	17	2.6	18	73	20	51	31	8	26	33	1.87
32238594--32238686	42	2.2	43	84	1	116	25	22	19	32	1.97
32240663--32240702	20	2.0	21	85	14	57	47	15	5	32	1.66
32242406--32242505	24	4.3	23	77	5	101	40	20	21	19	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276