Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  184  of  276  ( 33102 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60585099--60585132
15
2.3
15
89
0
50
5
38
0
55
1.24
60602648--60602689
18
2.3
18
80
12
50
33
9
11
45
1.73
60605746--60605798
27
2.0
27
88
0
79
33
13
28
24
1.93
60607403--60607449
15
3.1
15
84
9
60
29
6
2
61
1.32
60609639--60609685
19
2.5
19
86
6
60
25
19
10
44
1.82
60610600--60610651
24
2.1
25
82
10
63
21
9
5
63
1.45
60610831--60610931
52
1.9
52
95
0
184
29
12
26
30
1.93
60612581--60612667
45
1.9
45
90
0
138
40
19
22
17
1.91
60615194--60615379
47
4.0
42
95
3
192
30
28
9
32
1.88
60615127--60615645
49
10.6
49
91
5
752
28
29
8
33
1.86
60618421--60618468
24
2.0
24
95
0
87
31
12
27
29
1.93
60618798--60619485
44
15.7
44
72
9
388
31
19
21
27
1.97
60618798--60619183
88
4.3
88
79
5
434
32
18
21
27
1.97
60618771--60619106
181
1.9
181
93
0
582
33
16
22
26
1.96
60619371--60619565
41
4.6
41
71
15
144
29
22
21
27
1.99
60621076--60621126
3
16.7
3
76
11
50
31
3
3
60
1.33
60624019--60624068
21
2.4
21
93
0
82
34
26
6
34
1.81
60627070--60627137
26
2.6
25
76
6
64
58
0
4
36
1.18
60627565--60627625
22
2.7
23
80
9
72
49
0
3
47
1.18
60627553--60627640
23
3.7
25
71
17
80
46
0
5
47
1.26
60632163--60632209
12
4.0
12
80
2
51
19
4
4
72
1.18
60632160--60632208
11
4.3
11
77
10
53
18
2
4
75
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60636098--60636153
18
2.8
21
75
25
59
19
10
0
69
1.17
60636114--60636162
17
2.8
17
82
11
55
16
12
0
71
1.14
60636114--60636162
18
2.8
17
81
6
53
16
12
0
71
1.14
60636075--60636177
52
2.0
52
81
7
120
18
9
2
68
1.30
60636070--60636180
51
2.2
51
78
12
124
19
9
2
68
1.29
60637786--60637824
6
6.5
6
84
0
51
17
0
5
76
0.96
60643406--60643435
15
2.0
15
93
0
51
13
23
40
23
1.90
60647220--60647245
11
2.4
11
100
0
52
69
7
7
15
1.35
60657814--60657877
28
2.3
28
78
5
67
48
6
6
39
1.54
60685281--60685334
5
10.8
5
86
7
65
42
0
33
24
1.55
60685333--60685364
16
2.0
17
88
11
50
62
0
6
31
1.20
60690738--60690798
25
2.4
25
94
2
104
34
8
18
39
1.80
60693971--60694012
18
2.3
18
84
8
50
52
0
23
23
1.47
60694903--60694960
30
1.9
30
82
0
71
36
22
25
15
1.94
60695302--60695397
49
2.0
49
93
4
167
39
10
27
22
1.87
60711417--60711629
98
2.3
90
81
13
254
31
2
7
59
1.37
60711483--60711621
31
4.3
31
66
21
106
30
1
8
58
1.37
60711452--60711662
98
2.2
98
100
0
422
29
1
8
60
1.37
60716169--60716447
30
9.4
30
78
8
225
39
14
25
21
1.91
60716186--60716450
89
3.0
88
82
7
252
38
14
25
21
1.92
60716169--60716447
119
2.4
119
92
0
470
39
14
25
21
1.91
60720846--60721023
27
6.6
27
81
3
187
26
14
28
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60720843--60721002
82
2.0
81
85
3
214
27
15
27
30
1.96
60729048--60729338
27
10.6
27
79
8
246
28
15
28
27
1.96
60729048--60729336
55
5.2
54
74
8
215
29
14
28
28
1.96
60729076--60729285
113
1.9
113
85
2
296
28
15
28
27
1.96
60729023--60729313
140
2.1
139
96
1
539
29
15
27
27
1.96
60729023--60729349
140
2.4
138
91
3
455
29
15
27
27
1.96
60734838--60735236
200
2.0
200
98
0
780
33
16
24
25
1.96
60737549--60737726
27
6.6
27
83
3
205
26
15
28
29
1.96
60737550--60737705
82
1.9
81
88
3
233
26
15
28
29
1.96
60737546--60737726
82
2.2
81
83
2
229
27
15
27
29
1.96
60739036--60739125
45
2.0
45
97
0
171
5
18
42
33
1.74
60739372--60739578
53
3.8
55
79
1
204
21
24
17
37
1.94
60750262--60750336
39
1.9
39
94
0
132
37
12
12
38
1.79
60751672--60751704
17
1.9
17
88
11
50
54
9
0
36
1.32
60752252--60752284
10
3.0
11
91
8
50
0
51
48
0
1.00
60752435--60752462
8
3.5
8
100
0
56
21
10
0
67
1.20
60752531--60752568
19
2.0
19
89
0
58
21
0
7
71
1.11
60756751--60756952
3
67.3
3
71
11
83
61
2
6
28
1.36
60759392--60759467
23
3.3
23
90
0
125
21
21
27
30
1.98
60766793--60766868
23
3.3
23
90
0
125
21
21
27
30
1.98
60768476--60768962
88
5.5
88
96
0
794
21
22
22
33
1.97
60768544--60768959
44
9.5
43
66
19
218
22
22
22
33
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60779561--60779644
41
2.0
41
93
0
141
10
26
16
46
1.80
60781797--60781835
21
1.9
20
84
5
51
56
5
2
35
1.35
60781826--60781879
23
2.5
23
82
8
60
61
7
0
31
1.24
60781827--60781949
51
2.5
49
76
13
119
56
4
6
32
1.43
60782089--60782134
15
2.9
15
90
6
65
67
0
6
26
1.15
60782102--60782218
29
4.0
29
69
8
85
63
2
7
26
1.35
60782083--60782169
44
2.0
44
82
13
108
65
0
8
26
1.20
60782081--60782197
15
8.1
14
71
18
62
64
0
7
26
1.26
60785038--60785073
16
2.2
16
90
0
54
30
0
30
38
1.58
60785289--60785464
59
3.0
57
67
14
158
51
5
0
43
1.28
60793551--60793594
18
2.5
17
78
10
52
72
2
4
20
1.13
60797738--60797788
21
2.3
22
80
6
59
33
0
3
62
1.13
60798102--60798149
24
2.1
22
85
14
62
47
4
0
47
1.21
60801507--60801767
40
6.7
40
86
8
378
26
27
22
23
1.99
60801685--60801745
32
1.9
32
86
6
88
34
26
19
19
1.96
60806617--60806657
7
5.9
7
94
0
64
29
2
29
39
1.70
60809106--60809131
7
3.7
7
100
0
52
30
0
53
15
1.42
60819201--60819379
40
4.5
41
88
5
251
24
20
26
28
1.99
60819231--60819402
80
2.2
80
87
5
242
26
18
26
29
1.98
60827417--60827628
47
4.7
47
82
10
280
29
16
23
30
1.96
60827512--60827666
38
3.8
38
77
14
166
30
15
25
29
1.96
60827460--60827671
85
2.5
85
95
0
379
30
15
24
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60830926--60830966
15
2.7
15
80
0
55
17
19
12
51
1.76
60833245--60833459
47
4.7
48
77
12
238
29
15
23
31
1.95
60833295--60833496
85
2.4
85
93
0
350
30
14
24
30
1.95
60833347--60833496
38
3.7
38
76
14
156
30
14
25
30
1.95
60834098--60834137
21
1.9
21
89
0
62
45
10
15
30
1.78
60836094--60836267
50
3.6
50
78
12
157
25
31
17
24
1.97
60836088--60836400
47
6.6
48
71
16
203
25
30
17
26
1.98
60836088--60836400
95
3.3
93
74
14
257
25
30
17
26
1.98
60839408--60839826
211
2.0
212
93
0
714
42
19
10
28
1.84
60840203--60840296
46
2.1
45
84
7
120
25
27
19
27
1.99
60843636--60843694
20
2.9
20
92
2
100
20
32
38
8
1.83
60844743--60844997
46
5.5
46
79
9
222
23
29
19
28
1.98
60848173--60848258
43
2.0
43
86
0
118
27
33
19
18
1.96
60859316--60859355
21
2.0
20
85
5
53
25
0
27
47
1.52
60869014--60869089
40
1.9
40
86
0
107
34
31
14
19
1.92
60873071--60873296
42
5.2
42
75
6
182
28
26
16
27
1.97
60876004--60876078
28
2.7
28
81
4
80
30
32
9
28
1.88
60876077--60876116
2
20.0
2
100
0
80
50
50
0
0
1.00
60883608--60883807
27
7.4
27
84
2
240
37
19
18
25
1.94
60883608--60883808
81
2.5
81
85
0
276
37
19
17
24
1.93
60883609--60883808
54
3.7
54
86
0
265
38
19
17
25
1.93
60884460--60884511
27
2.0
26
84
3
68
17
26
21
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60884441--60885286
67
12.6
67
99
0
1683
17
29
22
29
1.97
60884527--60884578
27
2.0
26
84
3
68
17
26
21
34
1.95
60884594--60884645
27
2.0
26
84
3
68
17
26
21
34
1.95
60884661--60884712
27
2.0
26
84
3
68
17
26
21
34
1.95
60884728--60884779
27
2.0
26
84
3
68
17
26
21
34
1.95
60884795--60884846
27
2.0
26
84
3
68
17
26
21
34
1.95
60884862--60884913
27
2.0
26
84
3
68
17
26
21
34
1.95
60884929--60884980
27
2.0
26
84
3
68
17
26
21
34
1.95
60884996--60885047
27
2.0
26
84
3
68
17
26
21
34
1.95
60885063--60885114
27
2.0
26
84
3
68
17
26
21
34
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276