genome.fa.s12.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  130  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42033590--42033813	83	2.8	80	89	5	328	25	27	23	23	2.00
42037552--42037656	55	1.9	54	81	11	124	27	27	22	21	1.99
42039421--42039570	67	2.2	67	81	8	171	32	17	28	21	1.96
42039445--42039628	67	2.8	64	77	8	194	29	17	29	22	1.97
42044966--42045152	50	3.8	49	81	8	200	24	19	28	27	1.99
42046783--42046823	21	2.0	21	100	0	82	19	9	29	41	1.83
42050412--42050479	29	2.3	29	85	5	93	27	30	13	27	1.94
42050301--42050628	174	1.9	174	95	0	593	31	24	14	29	1.94
42050581--42050659	29	2.7	30	82	13	110	30	30	13	25	1.94
42063564--42063637	27	2.7	27	95	0	130	28	27	10	33	1.90
42073892--42073930	13	3.0	13	100	0	78	23	30	30	15	1.95
42078915--42079018	42	2.5	42	93	0	172	29	16	25	28	1.97
42078915--42079040	42	3.0	42	88	5	159	30	15	24	29	1.96
42079927--42079983	24	2.5	21	76	17	60	24	3	26	45	1.69
42086237--42086314	29	2.7	28	84	11	104	25	14	30	29	1.94
42086267--42086594	174	1.9	174	97	0	620	30	14	24	31	1.94
42090913--42090997	43	2.0	43	81	9	102	25	15	29	29	1.96
42095483--42095660	27	6.6	27	81	5	189	27	15	27	29	1.96
42095480--42095660	82	2.2	81	82	4	222	27	16	27	29	1.97
42104103--42104142	18	2.2	18	100	0	80	27	17	15	40	1.89
42104905--42104996	43	2.1	43	84	4	114	23	18	28	29	1.98
42110477--42110524	24	1.9	26	83	8	64	35	4	2	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42112819--42112866	22	2.2	23	85	7	64	35	0	6	58	1.23
42115873--42115913	21	2.0	21	90	4	66	19	24	41	14	1.89
42117218--42117481	48	5.6	48	81	11	234	24	29	18	27	1.98
42117357--42117527	46	3.7	46	80	4	191	24	27	19	28	1.98
42117066--42117490	48	8.9	48	74	11	231	25	28	17	27	1.98
42117183--42117527	94	3.7	91	76	13	258	24	28	17	28	1.98
42124492--42124723	49	4.7	49	80	3	275	29	25	18	26	1.98
42124505--42124721	101	2.2	100	84	2	276	29	24	18	26	1.98
42127145--42127190	16	2.9	16	83	0	56	45	26	2	26	1.65
42130682--42130765	31	2.7	31	94	1	143	29	17	27	25	1.98
42135637--42135690	26	2.1	26	82	3	65	35	18	14	31	1.91
42135903--42135986	31	2.7	31	96	1	152	32	17	26	23	1.97
42155837--42155904	22	3.1	22	97	0	127	26	16	23	33	1.95
42161156--42161278	62	2.0	61	88	0	174	41	13	22	21	1.88
42163173--42163904	386	1.9	386	81	5	888	36	9	20	33	1.85
42165553--42165604	27	2.0	26	84	3	68	17	26	21	34	1.95
42172921--42172971	27	1.9	26	84	4	66	19	27	17	35	1.94
42178803--42178955	40	3.8	38	86	8	216	25	28	23	22	2.00
42178802--42178955	80	1.9	80	95	0	281	25	27	23	23	2.00
42192506--42192545	18	2.3	19	84	16	52	42	12	17	27	1.85
42193176--42193208	3	11.0	3	93	0	57	3	33	0	63	1.10
42197722--42197785	32	2.1	29	78	13	67	37	12	10	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42197729--42197791	32	2.0	32	96	0	117	31	12	14	41	1.83
42198469--42198592	66	1.9	66	86	3	178	29	32	16	20	1.95
42200035--42200081	24	1.9	25	83	12	62	38	19	10	31	1.86
42204101--42204171	25	2.7	27	85	8	85	30	23	28	16	1.97
42204253--42204338	25	3.4	25	73	13	70	39	17	22	20	1.92
42207912--42208089	27	6.6	27	83	3	205	26	15	28	29	1.96
42207913--42208068	82	1.9	81	88	3	233	26	15	28	29	1.96
42207909--42208089	82	2.2	81	83	2	229	27	15	27	29	1.96
42218684--42218747	32	2.1	29	78	13	67	37	12	10	39	1.78
42218691--42218753	32	2.0	32	96	0	117	31	12	14	41	1.83
42219431--42219554	66	1.9	66	86	3	178	29	32	16	20	1.95
42220997--42221043	24	1.9	25	83	12	62	38	19	10	31	1.86
42225063--42225133	25	2.7	27	85	8	85	30	23	28	16	1.97
42225215--42225300	25	3.4	25	73	13	70	39	17	22	20	1.92
42232901--42232979	25	3.0	27	72	10	65	30	25	27	16	1.97
42234604--42234662	25	2.4	26	83	11	79	40	20	22	16	1.91
42237014--42237191	27	6.6	27	83	3	205	26	15	28	29	1.96
42237015--42237170	82	1.9	81	88	3	233	26	15	28	29	1.96
42237011--42237191	82	2.2	81	83	2	229	27	15	27	29	1.96
42238216--42238251	18	2.0	18	94	0	63	16	22	36	25	1.94
42245223--42245400	27	6.6	27	83	3	205	26	15	28	29	1.96
42245224--42245379	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42245220--42245400	82	2.2	81	83	2	229	27	15	27	29	1.96
42246279--42246551	137	2.0	137	97	0	519	29	18	20	31	1.96
42253551--42253728	27	6.6	27	83	3	205	26	15	28	29	1.96
42253552--42253707	82	1.9	81	88	3	233	26	15	28	29	1.96
42253548--42253728	82	2.2	81	83	2	229	27	15	27	29	1.96
42258569--42258599	4	7.5	4	96	3	53	51	0	3	45	1.17
42262126--42262495	45	8.2	45	91	2	566	21	19	30	28	1.97
42284649--42284676	13	2.2	13	100	0	56	14	32	35	17	1.90
42288275--42288310	3	12.7	3	88	11	58	33	0	0	66	0.92
42288275--42288306	11	2.9	11	100	0	64	34	0	0	65	0.93
42288275--42288310	14	2.5	15	86	13	58	33	0	0	66	0.92
42288931--42289042	7	15.7	7	70	17	52	38	41	0	19	1.58
42288971--42289014	21	2.1	21	87	8	63	40	38	0	20	1.53
42289348--42289527	41	4.4	41	86	2	218	20	21	20	38	1.94
42289348--42289557	41	5.1	41	83	5	187	20	20	20	38	1.94
42292290--42292350	30	2.0	30	83	0	77	31	22	8	37	1.84
42294929--42295022	27	3.5	27	79	5	102	42	18	7	31	1.78
42295027--42295180	27	5.7	27	87	0	200	27	20	9	41	1.84
42295025--42295265	54	4.7	54	76	11	252	28	19	9	42	1.82
42295084--42295265	97	1.9	97	89	2	285	28	19	8	43	1.80
42295181--42295238	27	2.1	27	96	0	107	29	20	8	41	1.82
42295187--42295268	27	3.0	27	85	0	101	28	15	9	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42295057--42295293	124	1.9	124	84	3	316	29	18	8	43	1.81
42295269--42295412	27	5.4	27	82	4	121	40	22	8	29	1.83
42295030--42295308	151	1.8	151	80	1	326	29	20	8	41	1.82
42295286--42295411	27	4.7	26	89	2	153	41	22	8	27	1.83
42295395--42295652	27	9.6	27	90	3	385	32	20	21	24	1.97
42303458--42303504	23	2.0	23	83	0	58	23	31	8	36	1.85
42304862--42304899	13	3.0	13	88	3	51	15	0	2	81	0.80
42304857--42304899	18	2.4	19	92	7	72	16	0	2	81	0.79
42304853--42304904	23	2.3	23	80	9	63	21	0	1	76	0.87
42306858--42306898	13	3.2	13	89	0	64	19	31	31	17	1.95
42314456--42314480	11	2.3	11	100	0	50	92	0	8	0	0.40
42315476--42315509	14	2.6	13	90	9	52	17	2	5	73	1.16
42320965--42321045	23	3.7	22	76	12	69	48	1	19	30	1.57
42321046--42321446	3	136.3	3	68	11	150	59	1	10	28	1.41
42328117--42328158	20	2.2	19	86	4	57	2	40	0	57	1.12
42329058--42329115	26	2.2	27	78	12	66	32	27	12	27	1.92
42333446--42333562	35	3.3	35	79	4	128	14	15	28	41	1.86
42341787--42341836	25	2.0	25	88	7	75	42	0	20	38	1.52
42343198--42343248	24	2.2	23	83	13	61	35	7	31	25	1.85
42345655--42345704	19	2.6	21	75	15	54	32	20	4	44	1.70
42349818--42349972	74	2.1	74	97	0	292	44	23	0	30	1.58
42350996--42351170	43	4.1	42	72	7	131	28	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42354004--42354188	79	2.3	82	84	7	238	25	27	22	24	2.00
42353985--42354188	40	5.1	40	82	8	238	25	27	22	25	2.00
42361979--42362202	79	2.8	79	86	6	301	25	27	22	24	2.00
42361979--42362202	40	5.7	40	87	6	289	25	27	22	24	2.00
42371904--42372162	47	5.5	48	71	11	164	28	19	29	22	1.98
42374647--42374754	26	4.2	26	85	4	146	32	6	25	36	1.81
42374647--42374754	52	2.1	52	91	0	171	32	6	25	36	1.81
42377076--42377550	44	10.8	44	77	3	373	32	18	20	29	1.96
42377075--42377550	132	3.6	132	78	7	448	32	18	20	28	1.96
42377305--42377579	44	6.2	44	70	12	111	34	18	19	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276