genome.fa.s12.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  97  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30664697--30664913	43	5.0	43	81	6	242	31	27	15	25	1.96
30670011--30670056	15	3.1	15	90	0	74	15	15	17	52	1.76
30670013--30670076	15	4.3	15	76	7	58	14	18	15	51	1.76
30670013--30670077	30	2.2	30	83	10	80	13	18	15	52	1.75
30673557--30673590	6	5.7	6	92	0	59	20	0	14	64	1.28
30683836--30683911	26	2.9	27	84	9	86	36	22	11	28	1.90
30684014--30684107	27	3.5	26	85	10	118	14	25	24	35	1.94
30684014--30684119	27	3.9	27	80	11	101	16	26	21	34	1.95
30684012--30684126	54	2.1	54	84	6	144	16	25	22	35	1.95
30686592--30686646	28	2.0	27	96	0	92	18	27	18	34	1.94
30696342--30696448	28	3.9	26	81	12	99	32	27	12	28	1.92
30696355--30696448	28	3.4	28	89	1	145	31	29	12	25	1.93
30699789--30699841	24	2.2	25	96	3	99	35	28	0	35	1.58
30700692--30700735	23	1.9	23	95	0	79	45	13	4	36	1.64
30702651--30702738	35	2.5	35	75	3	88	45	21	5	27	1.74
30702893--30702987	42	2.3	42	78	5	106	29	30	18	21	1.97
30706045--30706269	48	4.8	48	73	7	192	27	25	22	24	2.00
30709783--30709858	27	2.9	27	82	9	86	34	21	15	28	1.94
30709813--30709874	27	2.3	27	88	5	90	32	16	12	38	1.86
30709854--30710039	27	6.9	27	77	9	155	29	7	21	41	1.80
30709827--30710039	54	4.0	52	74	10	178	30	8	20	40	1.82
30709854--30710040	81	2.3	81	82	5	234	29	8	21	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30709827--30710023	108	1.8	108	84	6	274	29	8	21	41	1.82
30713796--30713859	22	2.9	22	80	0	74	31	21	26	20	1.98
30714213--30714488	27	10.4	26	80	9	254	30	10	19	39	1.86
30714225--30714488	81	3.3	78	82	6	318	30	10	20	39	1.86
30714452--30714934	239	2.0	238	90	2	754	30	22	19	26	1.98
30717476--30717516	21	1.9	22	85	5	57	41	14	0	43	1.45
30718735--30718764	15	1.9	16	93	6	53	20	20	6	53	1.67
30722139--30722175	5	7.6	5	87	6	58	18	2	0	78	0.87
30726597--30726628	5	6.6	5	92	7	57	18	0	0	81	0.70
30726597--30726627	9	3.3	9	91	8	53	19	0	0	80	0.71
30727920--30728078	45	3.6	45	85	5	191	28	28	19	22	1.98
30728884--30728979	47	2.0	47	97	0	183	42	14	13	29	1.84
30728962--30729592	317	2.0	314	95	0	1145	37	24	6	31	1.82
30729593--30729774	91	2.0	91	96	0	337	32	24	12	30	1.92
30729954--30730221	133	2.0	133	98	0	518	37	18	8	35	1.82
30736027--30736156	45	2.9	45	89	2	199	29	28	20	22	1.98
30736965--30737060	47	2.0	47	95	0	174	43	14	12	29	1.82
30740642--30740724	44	1.9	44	87	2	123	27	18	24	30	1.98
30740644--30740807	43	3.8	42	74	15	120	27	17	25	29	1.97
30743656--30744743	47	23.1	47	97	0	1924	31	8	30	29	1.88
30744908--30744986	37	2.1	37	88	0	113	25	18	30	25	1.98
30748840--30748959	43	2.8	42	75	16	120	31	18	24	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30757678--30757777	50	2.0	50	100	0	200	32	24	6	38	1.79
30757682--30757791	50	2.2	48	92	7	177	32	22	6	38	1.80
30765149--30765292	40	3.6	40	79	12	145	25	23	27	24	2.00
30765201--30765299	39	2.5	39	86	4	110	25	22	28	24	1.99
30765148--30765298	79	1.9	80	81	6	182	25	23	27	23	2.00
30772907--30773118	40	5.3	40	84	3	214	22	20	27	29	1.99
30774082--30774249	83	2.0	83	95	0	300	35	15	19	30	1.92
30785400--30785556	43	3.7	43	76	7	158	24	17	26	31	1.97
30785692--30785808	57	2.1	57	98	0	225	40	5	21	33	1.75
30786968--30786995	14	2.0	14	100	0	56	35	21	14	28	1.92
30787375--30787426	20	2.6	20	90	0	86	21	34	30	13	1.92
30799806--30799977	46	3.7	46	77	13	190	28	26	22	22	1.99
30799810--30799981	93	1.8	93	91	0	281	27	27	22	22	1.99
30800404--30800463	30	2.0	30	86	0	84	30	23	8	38	1.84
30805505--30805579	31	2.4	31	93	0	123	26	26	17	29	1.97
30805605--30805696	42	2.2	42	92	0	148	34	21	14	29	1.93
30805841--30805990	26	5.8	26	88	3	223	23	23	24	29	1.99
30807001--30807140	54	2.6	54	85	4	192	31	8	20	39	1.83
30806928--30807116	81	2.3	83	80	7	217	31	9	19	39	1.83
30806864--30807125	81	3.2	79	71	13	199	31	11	18	39	1.85
30806888--30807167	27	10.3	27	75	6	154	33	10	18	37	1.85
30806928--30807140	81	2.6	81	74	10	202	31	8	19	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30807118--30807329	27	7.9	27	82	4	214	40	8	22	28	1.82
30807119--30807329	81	2.6	81	83	1	253	40	8	22	28	1.82
30807306--30807424	27	4.4	27	79	5	125	31	10	19	39	1.85
30807306--30807424	54	2.2	54	83	3	150	31	10	19	39	1.85
30809374--30809461	6	14.3	6	74	17	74	48	14	18	18	1.81
30809374--30809461	25	3.6	25	83	7	101	48	14	18	18	1.81
30809580--30809690	27	4.2	26	85	7	125	38	22	23	15	1.92
30809580--30809701	54	2.3	54	85	1	156	40	21	22	16	1.91
30811064--30811110	6	7.8	6	86	9	69	51	17	14	17	1.77
30811073--30811157	25	3.4	25	79	4	84	49	12	17	20	1.79
30811276--30811394	27	4.5	26	84	5	148	37	22	24	15	1.92
30811276--30811397	54	2.3	54	85	1	165	37	22	23	16	1.93
30811317--30811417	27	3.5	30	79	15	92	32	22	27	16	1.96
30812915--30812991	31	2.5	31	91	0	127	27	24	18	29	1.98
30813015--30813106	42	2.2	42	88	0	130	34	21	14	29	1.93
30813251--30813426	26	6.8	26	92	0	291	23	25	25	26	2.00
30814251--30814302	27	1.9	27	84	7	70	19	21	23	36	1.95
30814347--30814398	27	1.9	27	85	14	72	34	13	11	40	1.81
30814409--30814575	27	6.2	27	80	4	158	30	8	20	39	1.84
30814436--30814575	54	2.6	54	85	4	192	31	9	20	38	1.84
30814324--30814575	81	3.1	81	73	5	213	31	10	19	38	1.85
30814553--30814764	27	7.9	27	82	7	216	41	8	22	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30814436--30814632	54	3.7	53	80	5	135	36	9	19	34	1.85
30814525--30814818	81	3.6	81	71	8	213	38	8	21	31	1.84
30814770--30814859	27	3.3	27	84	3	110	31	10	17	41	1.83
30816696--30816784	45	2.0	45	97	0	169	31	19	12	37	1.88
30820203--30820271	27	2.6	27	86	4	86	46	11	20	21	1.82
30821621--30821664	23	2.0	21	86	8	61	11	40	0	47	1.39
30828605--30828665	25	2.4	25	88	0	77	26	21	22	29	1.99
30832303--30832353	26	2.0	26	92	3	86	52	3	0	43	1.19
30841372--30841502	66	1.9	69	80	9	151	33	14	30	21	1.93
30843323--30843577	46	5.4	47	74	12	172	24	29	18	27	1.98
30845293--30845425	7	18.4	7	76	11	108	18	0	32	48	1.48
30845287--30845418	22	6.1	21	79	11	108	18	0	31	49	1.48
30845287--30845418	36	3.7	35	80	13	135	18	0	31	49	1.48
30845287--30845426	15	9.6	14	77	17	110	18	0	32	49	1.48
30848831--30848879	22	2.2	22	85	0	62	18	34	28	18	1.94
30863320--30863345	11	2.4	11	100	0	52	26	0	15	57	1.38
30864934--30865103	93	1.8	93	92	0	286	28	30	19	21	1.98
30864927--30865102	46	3.8	46	78	12	189	29	30	19	21	1.97
30872509--30872680	93	1.8	93	96	0	317	27	28	21	22	1.99
30872502--30872677	46	3.8	46	77	12	198	28	28	21	21	1.98
30872551--30872689	47	3.0	46	73	16	135	29	28	19	23	1.98
30876304--30876329	13	2.0	13	100	0	52	15	23	30	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30876533--30876564	16	2.0	16	93	0	55	56	34	0	9	1.32
30877969--30878084	29	4.0	30	75	11	91	28	15	29	26	1.96
30877977--30878085	57	1.9	58	84	1	148	27	15	30	26	1.96
30881062--30881092	16	1.9	16	93	0	53	80	0	3	16	0.83
30881058--30881093	11	3.3	11	88	0	54	80	0	2	16	0.83
30886666--30886843	27	6.6	27	82	5	180	29	27	15	27	1.96
30886687--30886842	82	1.9	81	87	6	226	29	27	15	27	1.96
30889538--30889596	28	2.1	28	96	0	109	38	8	15	37	1.78
30895362--30895545	40	4.6	40	93	0	305	28	27	22	21	1.99
30903920--30903996	27	2.8	28	78	9	70	29	27	11	31	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276