genome.fa.s12.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  104  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32939323--32940270	96	9.9	96	97	1	1674	29	17	25	27	1.97
32942317--32942698	40	9.6	40	90	0	597	23	21	25	29	1.99
32942317--32942698	80	4.8	80	95	2	662	23	21	25	29	1.99
32956697--32956730	18	1.9	18	88	5	52	44	2	2	50	1.32
32958117--32958180	33	2.0	32	84	3	83	20	21	20	37	1.94
32965997--32966182	49	3.8	48	84	7	230	25	18	27	28	1.98
32966048--32966128	26	3.2	26	68	16	80	24	13	29	32	1.94
32969430--32969480	14	3.7	14	84	2	68	54	33	0	11	1.37
32969423--32969476	28	1.9	28	84	0	72	55	31	1	11	1.45
32969594--32969623	14	2.1	14	100	0	60	46	30	0	23	1.52
32970098--32970166	21	3.3	21	66	8	50	47	30	1	20	1.59
32970042--32970157	14	8.2	14	68	12	67	44	34	2	18	1.63
32970397--32970565	40	4.2	39	76	7	133	24	20	21	33	1.97
32972905--32973041	43	3.2	42	75	9	134	30	23	18	27	1.98
32973485--32973568	42	2.0	42	88	4	125	33	16	10	39	1.83
32980890--32980994	55	1.9	55	88	0	156	21	27	23	26	1.99
32986285--32986383	28	3.5	29	80	6	105	30	26	15	28	1.96
32989363--32989688	48	6.8	48	76	9	290	27	20	27	24	1.99
32989360--32989688	96	3.4	96	82	7	393	27	20	27	24	1.99
32997028--32997159	53	2.5	54	88	1	185	34	15	19	30	1.93
32997028--32997159	27	4.9	27	71	9	108	34	15	19	30	1.93
32997280--32997338	27	2.2	26	82	5	73	23	22	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33017144--33017195	11	4.7	11	79	6	52	73	1	3	21	1.10
33018280--33018374	37	2.5	38	83	6	113	37	37	10	13	1.80
33019125--33019173	20	2.5	18	78	18	53	55	2	0	42	1.11
33022062--33022104	17	2.5	17	100	0	86	18	34	34	11	1.87
33022275--33022646	134	2.8	133	84	4	453	39	20	9	31	1.84
33022275--33022693	27	15.6	27	78	6	395	38	20	9	31	1.84
33022685--33023031	27	12.9	27	84	0	417	37	17	21	23	1.94
33023015--33023078	27	2.4	27	71	10	67	20	18	23	37	1.94
33023464--33023528	22	3.0	22	80	8	78	21	24	23	30	1.99
33023858--33023930	6	11.8	6	71	16	51	16	19	13	50	1.77
33023861--33023912	19	2.7	19	93	0	86	13	23	17	46	1.83
33025272--33025437	90	1.8	90	80	2	199	27	24	18	29	1.98
33025394--33025510	42	2.8	41	86	2	144	34	23	11	31	1.90
33025416--33025511	42	2.3	42	92	0	156	34	22	10	32	1.88
33029467--33029784	47	6.9	45	78	7	282	34	17	24	22	1.96
33029467--33029711	95	2.7	89	77	7	247	35	19	24	21	1.96
33029462--33029784	142	2.3	136	76	8	319	34	17	24	23	1.95
33029736--33030270	54	10.0	54	86	3	704	36	14	23	25	1.93
33029736--33030240	107	4.7	107	92	1	755	36	14	23	26	1.93
33029750--33030259	53	9.5	53	85	4	291	36	14	23	25	1.93
33034552--33034619	32	2.1	33	94	2	120	41	4	19	35	1.71
33036086--33036112	12	2.2	12	100	0	54	25	0	7	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33036281--33036462	92	2.0	93	91	3	296	31	19	25	23	1.98
33036284--33036485	92	2.2	93	85	4	282	31	19	25	23	1.98
33036496--33036704	47	4.4	47	91	0	337	33	13	25	27	1.94
33036677--33036998	54	6.0	54	88	1	394	35	15	24	24	1.94
33039579--33039693	29	4.0	28	80	8	117	29	29	13	26	1.95
33039579--33039680	29	3.6	29	85	4	118	29	30	14	25	1.95
33039570--33039680	58	1.9	57	85	1	150	28	30	14	26	1.95
33039908--33039946	16	2.4	16	95	0	69	5	15	25	53	1.62
33041203--33041241	16	2.4	17	91	4	62	15	5	30	48	1.66
33044151--33044254	29	3.7	29	83	7	124	27	25	15	30	1.96
33050222--33050282	30	2.0	31	83	3	79	36	8	19	36	1.82
33051028--33051149	47	2.6	47	83	5	165	36	13	24	25	1.91
33051128--33051290	54	3.0	52	81	10	186	35	14	24	25	1.94
33052614--33052679	34	1.9	34	96	0	123	7	24	45	22	1.78
33053254--33053337	14	7.0	12	74	16	52	34	3	1	60	1.21
33060797--33060864	35	2.0	34	88	2	100	38	14	27	17	1.89
33065043--33065563	220	2.4	220	94	1	936	33	16	21	28	1.95
33065424--33065671	130	1.9	130	89	1	390	30	14	23	31	1.95
33068344--33068499	27	5.7	27	79	7	154	26	14	28	30	1.95
33068344--33068494	82	1.9	81	85	4	214	26	15	28	29	1.96
33068343--33068520	27	6.6	27	76	6	153	26	15	28	29	1.96
33068342--33068520	82	2.2	80	81	6	200	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33070746--33070788	15	2.9	15	82	6	52	41	0	0	58	0.98
33070745--33070833	22	3.7	22	73	19	63	37	5	0	57	1.22
33070726--33070821	15	6.2	17	70	17	50	34	4	1	60	1.23
33070745--33070833	12	7.2	12	71	20	60	37	5	0	57	1.22
33072177--33072254	41	1.9	41	100	0	156	35	29	2	32	1.71
33076745--33076963	43	5.1	43	83	4	282	25	16	26	31	1.97
33076745--33076964	84	2.6	84	85	4	291	25	16	26	30	1.97
33078640--33078672	10	3.2	11	91	8	52	57	9	9	24	1.58
33080073--33080197	48	2.6	47	81	7	153	28	24	20	26	1.99
33084772--33084926	43	3.6	43	75	6	127	27	16	23	31	1.96
33089162--33089191	5	6.0	5	92	0	51	23	0	0	76	0.78
33089227--33089257	15	2.1	15	93	0	53	16	0	6	77	0.97
33092490--33092525	18	2.0	18	94	0	63	47	22	19	11	1.80
33107074--33107103	12	2.5	12	94	0	51	46	6	0	46	1.29
33109063--33109214	37	4.1	37	93	0	241	25	32	21	21	1.97
33109377--33109796	47	8.9	47	88	0	606	27	29	11	31	1.92
33112979--33113156	40	4.5	40	88	4	236	26	28	22	22	1.99
33118304--33118406	42	2.4	42	80	13	122	28	30	17	24	1.97
33124461--33124545	37	2.4	35	81	11	93	21	7	29	42	1.79
33126387--33126462	33	2.3	33	86	2	98	25	25	23	26	2.00
33126812--33126979	27	6.3	27	83	2	187	25	20	17	36	1.94
33126836--33126979	53	2.7	53	85	4	182	25	21	17	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33126812--33126979	80	2.1	81	87	5	243	25	20	17	36	1.94
33127210--33127249	17	2.4	17	100	0	80	22	37	25	15	1.93
33128419--33128464	24	1.9	24	81	0	56	17	36	4	41	1.69
33129067--33129151	30	2.8	30	83	0	107	20	17	36	25	1.94
33131417--33131742	144	2.3	144	84	3	415	27	19	28	24	1.99
33131425--33131745	48	6.7	48	74	8	278	28	19	28	23	1.99
33135011--33135063	18	2.8	19	83	11	74	47	7	30	15	1.73
33135058--33135090	18	1.9	17	88	11	50	36	6	33	24	1.80
33136370--33136406	18	2.0	19	94	5	67	5	43	0	51	1.24
33141312--33141837	264	2.0	261	92	1	865	33	18	11	36	1.87
33156366--33156438	36	2.0	36	94	0	128	49	5	21	23	1.70
33167341--33167376	16	2.2	16	95	0	63	27	11	38	22	1.88
33169080--33169132	26	2.0	26	100	0	106	20	11	37	30	1.88
33171222--33171278	20	2.8	20	97	0	105	35	10	21	33	1.87
33171220--33171278	11	5.7	11	75	15	63	35	11	20	32	1.89
33171326--33171394	24	2.8	25	91	8	115	27	24	21	26	1.99
33171325--33171421	24	4.0	23	81	10	97	28	23	21	25	1.99
33171614--33171697	31	2.7	31	92	1	143	32	19	26	22	1.97
33179421--33179449	13	2.2	13	100	0	58	27	10	34	27	1.89
33182778--33182856	25	3.3	25	61	10	65	32	5	29	32	1.79
33182765--33183002	47	5.0	47	90	2	359	31	9	30	28	1.89
33182765--33183002	96	2.5	95	87	5	340	31	9	30	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33184406--33185402	498	2.0	498	98	0	1940	29	14	17	37	1.90
33190439--33190478	21	1.9	21	89	0	62	37	2	2	57	1.26
33190732--33190804	22	3.7	18	72	16	56	64	1	0	34	1.02
33190732--33190806	10	7.6	10	74	16	68	62	1	0	36	1.04
33190792--33190826	16	2.2	16	89	0	52	62	8	2	25	1.38
33191912--33191945	17	2.0	17	94	0	59	38	5	2	52	1.41
33207885--33208023	51	2.7	51	80	2	127	28	27	17	26	1.98
33211672--33212013	171	2.0	171	100	0	684	40	16	19	23	1.91
33225751--33225790	21	1.9	21	94	0	71	32	5	15	47	1.66
33227464--33227494	16	1.9	16	93	0	53	48	0	9	41	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276