genome.fa.s12.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  197  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65306833--65306997	79	2.1	79	79	6	174	26	20	26	26	1.99
65314390--65314613	39	5.6	39	85	7	242	24	22	27	25	2.00
65314390--65314613	40	5.7	40	85	8	266	24	22	27	25	2.00
65314390--65314613	79	2.8	80	82	10	280	24	22	27	25	2.00
65314390--65314646	79	3.3	79	81	10	208	25	21	26	25	2.00
65318420--65318476	30	1.9	30	85	7	80	28	24	8	38	1.85
65320192--65320255	21	3.0	21	100	0	128	29	14	23	32	1.94
65323756--65323797	21	2.0	21	85	0	57	21	16	42	19	1.89
65326026--65326085	30	2.0	30	83	6	77	30	26	6	36	1.82
65329980--65330088	54	2.0	55	92	1	184	24	14	22	37	1.92
65332366--65332541	56	3.1	56	99	0	343	45	9	22	22	1.80
65332366--65332580	112	1.9	111	81	8	258	49	8	21	20	1.74
65333429--65333613	40	4.7	40	83	7	200	23	22	28	25	1.99
65333482--65333646	79	2.1	79	83	6	201	25	20	27	26	1.99
65340693--65340775	30	2.7	30	81	9	89	13	21	1	63	1.35
65340726--65340781	18	3.1	18	76	5	51	7	19	3	69	1.27
65340751--65340775	12	2.1	12	100	0	50	8	16	0	76	1.02
65340778--65340808	12	2.6	12	94	0	53	29	16	9	45	1.79
65343041--65343138	30	3.3	30	75	0	97	29	16	26	27	1.97
65343538--65343923	196	2.0	196	87	3	553	33	12	22	31	1.92
65345871--65345918	21	2.2	21	85	10	62	58	0	0	41	0.98
65362642--65362711	35	2.0	35	94	0	122	32	15	18	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65365343--65365384	14	2.7	15	89	10	59	30	0	14	54	1.40
65367567--65367740	49	3.6	48	77	9	167	25	28	18	27	1.98
65367570--65367745	99	1.8	96	85	6	246	25	28	18	27	1.98
65367710--65367830	46	2.7	44	83	7	145	25	28	18	28	1.98
65379294--65379438	27	5.4	27	85	3	193	36	20	19	24	1.95
65380910--65380975	28	2.4	28	87	2	98	46	9	24	19	1.78
65386717--65386845	27	4.8	26	79	11	145	38	19	17	24	1.92
65386717--65386858	54	2.6	54	84	6	173	38	17	19	25	1.93
65387487--65387538	27	2.0	26	84	3	68	17	26	21	34	1.95
65387554--65387617	33	2.0	32	84	3	83	20	23	20	35	1.96
65387579--65387638	27	2.3	26	85	2	75	21	23	20	35	1.96
65392857--65393102	49	5.0	49	82	3	303	29	28	18	24	1.98
65392859--65393102	100	2.5	99	87	2	346	29	27	18	24	1.98
65398385--65398499	25	4.6	25	85	0	140	33	19	24	22	1.97
65398385--65398497	50	2.3	50	85	3	156	34	19	23	22	1.96
65400098--65400285	40	4.7	40	91	0	295	22	27	20	29	1.99
65403987--65405000	47	21.6	47	97	0	1924	27	29	8	33	1.86
65406688--65406712	13	1.9	13	100	0	50	36	16	16	32	1.90
65411307--65411365	26	2.2	26	90	3	91	44	20	23	11	1.85
65411320--65411369	26	1.9	26	100	0	100	42	20	24	14	1.88
65414307--65414570	45	5.7	45	83	9	332	26	19	29	25	1.98
65414298--65414665	50	7.8	48	78	10	312	26	19	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65416020--65416127	54	2.0	54	98	0	207	28	9	21	40	1.84
65416797--65416867	34	2.1	34	84	5	90	22	28	22	26	1.99
65419167--65419287	39	3.1	39	91	0	197	23	29	23	22	1.99
65437415--65437523	35	3.0	37	70	20	111	37	21	16	24	1.93
65437372--65437523	72	2.1	72	88	2	225	36	19	19	24	1.94
65437387--65437507	35	3.4	34	71	17	102	36	24	16	22	1.94
65439607--65439728	42	2.9	41	71	16	104	29	23	15	31	1.95
65442699--65442725	6	4.5	6	100	0	54	51	0	18	29	1.46
65444429--65444506	31	2.5	31	87	2	102	25	23	26	24	2.00
65445483--65445582	27	3.6	27	86	8	112	32	29	12	27	1.92
65445485--65445582	28	3.5	28	91	2	144	32	28	12	26	1.92
65453580--65453731	27	5.6	27	93	3	232	30	28	13	26	1.94
65453580--65453756	55	3.2	55	90	0	264	31	29	13	25	1.94
65462738--65462901	43	3.9	41	76	12	127	29	15	24	31	1.95
65477094--65477243	75	2.0	75	98	0	291	25	27	14	32	1.95
65480758--65480940	79	2.3	81	83	7	223	24	27	22	24	2.00
65480737--65480940	40	5.1	40	81	8	229	24	27	22	25	2.00
65487226--65487309	27	3.1	26	84	5	78	33	25	10	30	1.90
65487240--65487337	28	3.5	28	85	2	117	32	27	12	27	1.92
65495208--65495305	27	3.5	28	87	2	126	32	28	12	26	1.92
65500650--65500676	14	1.9	14	100	0	54	29	14	11	44	1.80
65503974--65504012	21	1.9	20	89	5	60	46	20	0	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65505273--65505408	69	2.0	67	84	5	175	37	19	12	30	1.89
65518796--65518820	8	3.1	8	100	0	50	24	0	0	76	0.80
65527306--65527339	16	2.1	17	88	5	52	38	5	17	38	1.74
65528229--65528267	20	2.0	20	89	0	60	43	20	2	33	1.65
65528417--65528517	23	4.2	23	82	3	103	35	20	22	20	1.96
65528417--65528517	24	4.2	24	81	8	100	35	20	22	20	1.96
65530933--65531011	15	5.3	15	66	22	58	20	27	34	17	1.95
65530925--65531022	30	3.3	30	97	0	187	16	26	35	21	1.94
65533200--65533281	40	2.0	40	92	0	137	54	19	3	21	1.59
65533769--65533808	14	2.7	15	88	7	55	25	12	2	60	1.45
65534176--65534231	27	2.1	27	100	0	112	60	21	14	3	1.49
65534226--65534273	23	2.1	23	100	0	96	35	12	14	37	1.84
65535208--65535238	16	1.9	16	93	0	53	61	0	9	29	1.28
65539084--65539115	15	2.2	14	94	5	55	6	15	9	68	1.36
65539695--65539759	20	3.4	19	76	19	64	67	0	7	24	1.16
65548468--65548506	10	3.6	10	81	18	51	48	10	0	41	1.37
65548455--65548506	23	2.3	23	93	6	88	48	11	0	40	1.40
65559698--65560676	484	2.0	486	91	1	1590	42	15	8	33	1.78
65563334--65563657	50	6.7	50	78	10	325	26	19	30	23	1.98
65563334--65563657	95	3.4	94	78	11	320	26	19	30	23	1.98
65565465--65565521	22	2.6	22	74	0	60	14	33	33	19	1.91
65567974--65568049	27	2.9	26	79	12	84	46	10	11	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65578996--65579152	39	4.0	39	89	2	174	31	29	21	17	1.96
65579013--65579152	39	3.5	40	91	2	196	30	27	22	19	1.98
65579485--65579924	110	4.0	110	99	0	871	23	21	8	46	1.78
65582825--65582870	18	2.6	18	96	0	83	30	6	15	47	1.70
65588260--65589223	482	2.0	482	92	0	1588	26	22	17	32	1.96
65590596--65590677	41	2.0	41	97	0	155	12	30	14	42	1.82
65590598--65590662	20	3.2	20	64	20	53	10	29	12	47	1.75
65592157--65592192	17	2.1	17	89	0	54	38	2	0	58	1.13
65592098--65592196	41	2.5	39	79	8	101	42	2	2	53	1.23
65596613--65596637	13	1.9	13	100	0	50	0	8	0	92	0.40
65596615--65596639	12	2.1	12	100	0	50	0	8	0	92	0.40
65597172--65597208	15	2.4	16	86	13	51	37	0	2	59	1.12
65597175--65597208	16	2.1	17	88	5	52	41	0	2	55	1.15
65606859--65606905	23	2.0	23	100	0	94	25	12	14	46	1.80
65609687--65610517	47	17.7	47	99	0	1644	25	19	27	27	1.99
65615251--65615300	26	1.9	26	91	0	82	32	16	12	40	1.84
65618006--65618039	16	2.2	16	89	5	52	29	5	11	52	1.61
65650724--65650767	21	2.1	21	83	8	54	50	13	0	36	1.42
65650717--65650777	19	3.2	18	77	20	61	40	14	1	42	1.56
65650746--65651033	147	2.0	147	88	2	436	40	12	4	42	1.62
65651490--65651672	92	2.0	92	97	0	348	26	23	13	36	1.92
65651785--65651825	19	2.2	19	100	0	82	36	17	4	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65653299--65653352	27	2.0	27	96	0	99	25	12	3	57	1.52
65653374--65653406	13	2.5	13	90	9	50	15	21	0	63	1.30
65653374--65653405	7	4.9	7	88	11	50	15	21	0	62	1.32
65654615--65654715	52	1.9	52	93	0	175	18	16	20	43	1.88
65655314--65655622	45	6.9	45	96	0	519	25	20	15	37	1.92
65655736--65655767	16	2.0	16	100	0	64	50	25	12	12	1.75
65658476--65658537	19	3.1	21	74	19	62	22	11	1	64	1.34
65658673--65658839	67	2.5	67	100	0	334	13	20	15	49	1.79
65663035--65663173	60	2.3	60	83	6	165	28	18	25	27	1.98
65666558--65666858	150	2.0	150	99	0	593	32	5	15	46	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276