genome.fa.s12.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  164  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53590797--53590966	40	4.3	40	87	0	216	27	28	20	24	1.99
53590797--53590943	79	1.8	79	86	1	213	28	27	19	24	1.98
53590833--53591019	80	2.3	79	81	4	205	27	28	19	24	1.99
53590951--53591028	40	1.9	41	82	10	97	26	28	21	23	1.99
53592453--53592537	42	2.0	42	100	0	170	21	25	22	30	1.98
53594236--53594807	284	2.0	284	98	0	1110	28	24	19	27	1.98
53597490--53597570	31	2.5	31	86	4	99	61	18	3	16	1.48
53597804--53597900	42	2.3	42	81	10	117	3	46	18	31	1.65
53597807--53597898	21	4.4	21	76	5	87	3	46	18	31	1.65
53598508--53598536	14	2.1	14	100	0	58	51	0	13	34	1.42
53603359--53603577	9	24.7	9	68	15	82	37	2	15	44	1.60
53603363--53603437	34	2.2	34	85	4	98	34	0	14	50	1.43
53603396--53603577	18	10.7	18	66	21	106	37	3	14	43	1.62
53603671--53603863	62	3.2	60	74	16	211	55	2	5	35	1.37
53607855--53607906	14	3.5	14	77	17	52	53	30	0	15	1.42
53610171--53610209	17	2.3	17	100	0	78	61	12	5	20	1.50
53622849--53622944	28	3.4	28	86	2	122	33	27	12	27	1.92
53626767--53626916	48	3.1	48	85	0	192	28	23	20	28	1.99
53634533--53634572	21	1.9	21	94	0	71	25	7	30	37	1.83
53636851--53637012	42	3.8	42	78	3	164	32	24	12	30	1.93
53646282--53646330	24	2.0	24	100	0	98	36	8	12	42	1.72
53647729--53647764	15	2.3	15	90	4	54	5	11	0	83	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53653934--53654046	43	2.6	43	74	12	106	30	21	13	34	1.91
53655238--53655284	24	2.0	24	91	0	76	19	29	19	31	1.96
53655601--53655670	27	2.6	27	95	2	113	31	28	12	27	1.93
53655601--53655698	28	3.5	28	90	2	135	31	28	13	26	1.94
53660409--53660446	12	3.0	13	85	14	53	71	0	0	28	0.87
53667762--53667804	15	2.9	14	81	18	52	72	0	0	27	0.85
53667762--53667804	12	3.4	13	81	15	54	72	0	0	27	0.85
53674166--53674339	47	3.6	47	75	9	165	22	30	19	27	1.98
53674168--53674341	94	1.8	94	85	6	242	22	31	19	26	1.98
53674264--53674522	46	5.5	48	75	13	220	22	30	19	28	1.98
53703155--53703370	67	3.3	66	76	13	212	30	17	28	24	1.97
53706702--53706762	30	2.0	30	87	0	86	39	6	19	34	1.78
53713926--53713974	23	2.1	23	100	0	98	20	14	26	38	1.91
53719147--53719206	27	2.3	26	82	2	66	35	16	23	25	1.95
53719251--53719302	27	2.0	26	84	3	68	34	21	26	17	1.95
53719947--53720145	27	7.4	27	85	2	184	25	18	18	38	1.93
53719974--53720145	81	2.1	81	89	2	256	25	17	18	38	1.92
53728382--53728559	27	6.6	27	83	3	205	26	15	28	29	1.96
53728383--53728538	82	1.9	81	88	3	233	26	15	28	29	1.96
53728379--53728559	82	2.2	81	83	2	229	27	15	27	29	1.96
53728464--53728570	27	3.9	27	85	1	70	26	14	28	30	1.95
53737265--53737419	28	5.5	28	89	3	204	33	25	12	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53737265--53737420	57	2.8	57	89	4	219	33	25	12	28	1.92
53741945--53742177	39	6.0	39	86	4	251	28	28	20	22	1.98
53762133--53762283	39	3.9	39	85	5	184	26	27	20	25	1.99
53766366--53766613	49	5.0	50	82	4	304	26	18	25	29	1.98
53766473--53766556	28	3.2	28	64	25	74	23	16	28	30	1.96
53771603--53771830	50	4.6	49	79	2	251	25	17	26	30	1.97
53771605--53771830	99	2.3	99	84	3	267	25	17	26	30	1.97
53802165--53802347	98	1.9	99	85	7	257	31	20	11	36	1.89
53802165--53802348	33	5.6	33	81	3	219	31	21	11	35	1.89
53802354--53802447	29	3.2	29	84	0	125	26	29	11	31	1.92
53802425--53802630	31	6.7	31	84	4	231	26	26	18	28	1.98
53802425--53802630	62	3.4	62	87	5	294	26	26	18	28	1.98
53805177--53805218	15	2.8	15	92	0	75	50	14	16	19	1.79
53807396--53807565	46	3.7	45	75	10	182	29	30	20	20	1.97
53807404--53807575	93	1.8	93	88	4	267	28	30	20	20	1.98
53812829--53813004	46	3.8	46	80	7	212	28	28	21	21	1.98
53816893--53817101	31	6.8	32	82	8	247	28	26	16	28	1.97
53816893--53817101	93	2.2	93	85	6	273	28	26	16	28	1.97
53827157--53827344	40	4.7	40	89	0	270	24	28	22	24	2.00
53827398--53827510	38	3.0	38	92	2	174	24	27	17	30	1.97
53842681--53843092	94	4.4	94	82	9	450	24	28	18	28	1.98
53842681--53843100	140	3.0	142	77	9	448	25	28	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53842681--53843100	46	8.9	47	74	11	315	25	28	17	28	1.98
53845948--53845985	16	2.3	16	86	13	51	34	5	13	47	1.65
53852797--53852827	15	2.1	15	93	0	53	35	25	32	6	1.82
53856944--53857071	49	2.6	48	83	2	157	21	28	18	30	1.97
53857084--53857212	46	2.7	48	86	3	163	22	31	20	25	1.98
53859248--53859346	29	3.4	29	82	0	126	34	11	28	26	1.90
53860976--53861098	47	2.7	44	83	7	149	27	30	17	23	1.97
53868395--53868521	49	2.6	50	85	8	156	23	28	19	28	1.98
53869039--53869069	16	1.9	16	93	0	53	29	9	12	48	1.73
53872010--53872107	42	2.3	42	89	6	146	32	12	20	34	1.90
53875127--53875302	45	4.0	45	78	12	163	24	16	26	32	1.96
53880051--53880271	46	4.7	47	76	16	203	24	30	18	26	1.98
53882646--53882762	49	2.4	49	84	2	146	29	20	26	23	1.99
53885996--53886023	14	2.0	14	100	0	56	28	28	28	14	1.95
53886010--53886173	45	3.6	45	85	1	213	23	15	27	33	1.95
53889204--53889322	43	2.8	42	75	7	114	25	16	24	33	1.96
53894362--53894569	104	2.0	104	100	0	416	32	13	27	25	1.94
53897567--53897654	46	1.9	46	88	0	122	27	30	22	19	1.98
53904471--53904599	46	2.8	46	95	0	222	29	29	21	19	1.98
53904479--53904618	46	3.0	45	88	4	140	28	29	21	20	1.98
53909683--53909794	41	2.7	41	76	12	120	24	19	26	29	1.98
53917136--53917165	14	2.1	14	93	0	51	63	10	6	20	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53922398--53922451	25	2.2	26	80	10	67	18	12	11	57	1.64
53924822--53924892	35	2.0	35	97	0	133	18	26	19	35	1.95
53925935--53926141	27	7.6	27	91	3	315	31	27	14	27	1.94
53925935--53926141	55	3.8	55	95	0	342	31	27	14	27	1.94
53926356--53926389	17	2.0	17	100	0	68	29	17	11	41	1.85
53927618--53927718	50	2.0	50	98	0	193	28	22	12	35	1.91
53934100--53934223	27	4.6	27	90	2	176	31	27	13	27	1.94
53934100--53934223	55	2.3	54	88	1	176	31	27	13	27	1.94
53938188--53938667	27	17.6	27	97	1	474	30	29	14	25	1.95
53938188--53938667	54	8.8	54	96	1	852	30	29	14	25	1.95
53938188--53938667	82	5.9	82	97	1	874	30	29	14	25	1.95
53946630--53946781	27	5.6	27	92	3	232	30	28	13	26	1.94
53946630--53946781	55	2.8	55	93	0	250	30	28	13	26	1.94
53946915--53947103	96	2.0	94	96	2	351	36	17	8	37	1.81
53959462--53959525	31	2.1	31	90	0	101	25	23	15	35	1.94
53959718--53960582	24	36.0	24	98	1	1662	28	20	20	29	1.98
53960635--53960677	20	2.2	20	100	0	86	32	18	11	37	1.87
53960714--53960761	25	1.9	25	91	0	78	25	14	25	35	1.94
53968753--53968915	27	6.0	27	80	2	175	36	17	15	30	1.91
53979308--53979481	27	6.4	27	79	2	170	38	18	16	25	1.92
53979308--53979478	54	3.2	54	83	0	198	38	18	16	26	1.92
53979309--53979495	81	2.3	81	83	1	214	36	19	16	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53983494--53983645	27	5.6	27	85	1	198	35	16	21	26	1.94
53983494--53983645	81	1.9	81	86	5	218	35	16	21	26	1.94
53983494--53983666	81	2.1	81	82	5	215	35	15	20	28	1.94
53989603--53989787	79	2.3	82	84	7	238	25	27	22	24	2.00
53989584--53989787	40	5.1	40	82	8	238	25	27	22	25	2.00
53996980--53997147	40	4.2	40	83	4	106	25	27	23	23	2.00
53997003--53997147	40	3.6	40	85	4	193	23	26	24	25	2.00
54005796--54006020	40	5.6	40	83	4	274	23	27	24	24	2.00
54006616--54006702	38	2.3	38	93	0	147	33	27	13	25	1.94
54013988--54014212	40	5.6	40	83	2	263	24	26	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276