genome.fa.s12.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  137  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44515510--44515540	14	2.2	14	94	0	53	61	29	0	9	1.28
44517113--44517189	37	2.1	37	95	0	136	49	10	20	19	1.77
44520622--44520666	12	3.8	12	81	0	54	4	71	0	24	1.05
44520606--44520662	24	2.4	24	87	0	78	3	70	1	24	1.13
44520620--44520666	18	2.6	19	86	6	71	4	70	0	25	1.05
44523254--44523297	20	2.1	21	83	4	54	15	4	13	65	1.41
44526948--44526989	12	3.5	12	83	6	50	7	45	21	26	1.77
44534619--44534651	11	2.9	12	86	13	52	33	0	0	66	0.92
44534653--44534692	18	2.2	18	86	8	55	67	12	0	20	1.22
44537113--44537158	18	2.5	18	82	3	56	26	13	13	47	1.78
44539335--44539478	72	2.0	72	98	0	279	34	19	11	35	1.87
44539773--44539861	30	3.0	29	80	6	88	30	14	14	40	1.86
44553603--44553634	13	2.4	14	94	5	57	75	0	9	15	1.05
44560122--44560189	33	2.1	32	91	2	109	45	2	1	50	1.26
44563487--44563662	46	3.8	45	78	11	187	21	21	28	28	1.98
44563484--44563654	93	1.8	93	91	2	281	21	21	29	27	1.99
44568086--44568180	50	1.9	50	84	0	127	33	17	5	43	1.72
44568900--44568946	25	2.0	25	83	8	62	27	14	4	53	1.60
44569207--44570251	46	22.9	46	95	1	1784	24	23	13	37	1.92
44574656--44574709	17	3.4	17	72	27	64	12	25	33	27	1.93
44574652--44574719	30	2.3	30	100	0	136	11	25	35	27	1.91
44574668--44574720	17	3.4	17	66	28	53	11	24	35	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44586393--44586428	13	2.9	12	84	8	54	55	19	5	19	1.62
44600672--44600944	30	9.1	30	72	7	196	37	12	23	27	1.90
44600693--44600904	60	3.5	60	81	1	228	36	12	23	27	1.91
44614000--44614775	206	3.8	206	93	0	1248	28	22	17	30	1.97
44617142--44617233	42	2.2	42	88	0	130	34	19	14	31	1.91
44617366--44617500	26	5.3	26	87	5	190	26	23	22	27	1.99
44617366--44617500	52	2.7	51	92	7	224	26	23	22	27	1.99
44617550--44617636	20	4.3	20	92	2	140	31	18	10	40	1.84
44618345--44618408	27	2.4	27	81	5	76	21	25	17	35	1.95
44618462--44618559	27	3.6	27	80	13	101	33	10	17	38	1.83
44618526--44618682	81	1.9	81	87	5	228	30	8	19	40	1.82
44618550--44618735	54	3.4	54	83	4	216	29	9	20	40	1.84
44618550--44618705	27	5.8	27	87	2	215	29	8	21	40	1.83
44618546--44618742	27	7.3	27	78	6	177	29	9	21	39	1.85
44618734--44618931	27	7.3	27	86	0	270	39	7	24	28	1.82
44624042--44624066	8	3.1	8	100	0	50	24	12	24	40	1.88
44624809--44624869	30	2.0	30	87	0	86	37	8	21	32	1.83
44625637--44625763	64	1.9	65	81	7	150	30	18	29	21	1.97
44631612--44631719	45	2.4	46	96	1	200	20	21	26	31	1.98
44633875--44633927	18	2.9	19	75	8	56	66	1	1	30	1.13
44640104--44640149	24	1.9	24	100	0	92	32	26	13	28	1.93
44641596--44641916	45	6.8	45	76	13	290	27	18	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44641641--44641906	95	2.7	95	88	3	397	28	17	28	25	1.98
44641587--44641916	140	2.3	137	83	7	360	27	17	28	25	1.98
44641592--44641916	146	2.3	140	83	7	413	27	18	28	25	1.98
44655173--44655304	44	3.0	44	95	3	230	66	6	16	9	1.41
44655245--44655334	28	3.2	28	68	13	78	71	6	11	11	1.31
44665627--44665828	55	3.7	53	73	13	162	34	17	25	22	1.96
44665626--44665826	108	1.8	110	86	4	291	34	17	25	22	1.95
44670665--44670825	24	6.6	24	69	14	105	32	29	12	25	1.92
44677234--44677394	24	6.6	24	70	11	103	30	31	14	23	1.94
44680162--44680309	42	3.4	43	80	10	126	28	26	18	26	1.98
44681846--44681930	41	2.1	41	88	4	127	25	21	31	21	1.98
44687117--44687235	47	2.5	47	98	0	229	31	27	15	24	1.96
44687708--44687767	30	2.0	30	90	0	93	28	25	8	38	1.84
44688046--44688088	22	2.0	22	95	0	77	32	30	16	20	1.95
44694214--44694518	46	6.6	46	98	0	547	27	29	22	20	1.98
44698185--44698307	61	2.0	61	95	0	219	42	10	15	31	1.81
44700360--44700404	23	2.0	23	91	4	74	46	17	4	31	1.68
44700357--44700420	22	3.0	21	82	12	78	43	15	4	35	1.68
44700386--44700436	19	2.9	17	77	11	57	35	15	9	39	1.81
44700370--44700427	19	2.8	21	84	10	66	39	15	6	37	1.74
44700508--44700539	15	2.1	15	100	0	64	25	37	6	31	1.81
44701862--44701926	32	2.0	32	100	0	130	26	21	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44705448--44705490	22	1.9	23	85	4	61	46	13	2	37	1.57
44705474--44705524	19	2.9	17	80	11	66	37	17	9	35	1.83
44711886--44711967	38	2.2	38	95	0	146	29	15	18	36	1.92
44725300--44725368	21	3.3	21	75	15	72	26	28	30	14	1.95
44732110--44732178	26	2.6	27	76	19	74	40	0	2	56	1.14
44734620--44734677	29	2.0	29	96	0	107	25	39	17	17	1.91
44738555--44738637	27	3.1	27	76	11	80	63	4	4	26	1.34
44738546--44738712	26	6.5	26	72	6	106	58	5	6	29	1.46
44740350--44740664	44	7.0	44	78	7	276	29	21	17	31	1.96
44740350--44740526	89	2.0	88	81	7	207	29	21	16	32	1.96
44740410--44740663	137	1.9	137	88	1	384	29	22	18	30	1.97
44741493--44741522	15	2.0	15	100	0	60	33	6	26	33	1.83
44748789--44748832	19	2.2	20	84	4	54	43	6	20	29	1.78
44752504--44752644	27	5.4	25	72	15	90	58	5	7	28	1.47
44756043--44756244	38	5.3	38	87	4	289	20	23	26	29	1.99
44756043--44756244	78	2.6	76	84	6	273	20	23	26	29	1.99
44756237--44756318	43	1.9	43	92	0	137	12	25	34	28	1.92
44756635--44756742	45	2.5	42	82	8	110	24	23	25	26	2.00
44765340--44765378	18	2.2	18	100	0	78	12	30	0	56	1.37
44769042--44769072	15	2.1	15	100	0	62	48	12	12	25	1.77
44769294--44769338	16	2.8	17	75	18	51	0	37	0	62	0.96
44772997--44773061	32	2.0	32	96	0	121	23	15	26	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44781696--44781834	56	2.5	56	90	1	206	26	15	24	33	1.95
44781699--44781864	56	2.9	55	81	12	162	26	15	26	31	1.95
44784660--44784705	23	2.0	23	86	0	65	21	26	28	23	1.99
44800130--44800200	26	2.7	26	82	6	81	28	22	22	26	1.99
44802725--44802757	16	1.9	18	88	11	52	21	0	27	51	1.48
44808931--44808968	19	2.0	19	94	0	67	36	28	5	28	1.79
44809386--44809431	19	2.5	19	82	10	51	28	0	39	32	1.57
44819697--44819752	29	1.9	29	92	0	94	41	32	5	21	1.76
44825171--44825210	20	2.0	20	95	0	71	20	22	30	27	1.98
44829052--44829276	40	5.6	40	85	4	292	23	28	24	24	2.00
44829877--44829958	38	2.2	38	100	0	164	32	25	13	28	1.93
44833251--44833440	37	5.1	37	97	0	344	26	33	18	21	1.96
44833559--44833783	47	4.7	47	90	3	326	28	29	8	33	1.87
44833559--44833783	96	2.4	94	89	3	335	28	29	8	33	1.87
44834771--44834853	42	2.0	42	97	0	157	19	20	14	45	1.85
44837267--44837460	47	4.1	47	89	0	280	33	10	29	26	1.90
44837296--44837367	22	3.1	22	64	24	58	33	13	29	23	1.93
44837430--44837622	48	3.8	48	79	12	233	37	6	24	31	1.80
44837768--44837876	37	2.9	37	90	0	173	24	18	30	26	1.98
44842206--44842240	6	5.8	6	86	0	52	54	0	25	20	1.45
44856100--44856167	2	34.0	2	100	0	136	50	50	0	0	1.00
44857833--44857867	18	1.9	18	88	0	52	2	17	2	77	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44857876--44857915	5	7.6	5	86	8	53	55	0	2	42	1.13
44859639--44859672	15	2.1	17	89	10	54	26	0	29	44	1.55
44866671--44866712	21	2.0	21	81	13	50	59	9	4	26	1.48
44878157--44878976	46	17.8	46	91	5	1282	21	19	28	30	1.98
44884182--44884346	42	3.9	42	80	1	195	32	15	24	27	1.95
44884182--44884346	85	2.0	84	82	1	204	32	15	24	27	1.95
44887428--44887468	21	1.9	22	85	5	57	46	21	4	26	1.72
44893084--44893315	40	5.8	40	84	4	324	25	28	21	24	1.99
44893064--44893314	80	3.2	80	95	0	432	26	28	21	23	1.99
44896570--44896659	28	3.2	28	65	22	80	42	26	8	22	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276