genome.fa.s12.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  173  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56713943--56713991	18	2.7	19	76	17	59	12	24	40	22	1.88
56714343--56714398	29	1.9	29	82	7	69	19	19	21	39	1.93
56716314--56716426	23	4.8	23	79	9	95	30	19	24	24	1.98
56717362--56717395	16	2.1	16	88	0	50	32	0	17	50	1.47
56727233--56727263	14	2.3	13	94	5	53	25	0	0	74	0.82
56728576--56728696	46	2.6	46	81	5	136	29	18	26	25	1.98
56738775--56738849	37	2.0	37	89	0	114	26	32	20	21	1.97
56738972--56739633	49	13.8	49	93	2	1053	29	29	8	33	1.86
56738972--56739633	96	6.9	96	94	2	1032	29	29	8	33	1.86
56738972--56739633	145	4.6	145	93	1	1091	29	29	8	33	1.86
56742336--56742374	20	1.9	21	89	5	62	41	23	2	33	1.68
56744969--56745086	45	2.6	44	85	6	148	28	17	27	25	1.98
56750020--56750175	42	3.7	42	86	1	213	30	12	24	32	1.93
56750010--56750175	85	2.0	84	85	3	226	30	12	24	32	1.92
56752923--56753100	27	6.6	26	81	6	169	26	16	28	29	1.97
56752920--56753100	82	2.2	81	83	2	220	26	16	27	29	1.97
56754923--56755003	42	1.9	42	84	0	108	20	19	38	20	1.94
56759930--56760019	45	2.0	44	93	2	153	51	7	31	8	1.62
56761098--56761286	40	4.7	40	90	2	290	25	23	26	23	2.00
56761098--56761319	40	5.6	40	86	5	263	26	23	26	23	2.00
56777566--56777724	80	2.0	80	100	0	318	27	15	27	30	1.96
56777697--56777821	27	4.6	27	88	3	187	25	14	29	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56777697--56777821	55	2.3	55	91	0	196	25	14	29	30	1.95
56802438--56802477	21	2.0	20	85	5	53	10	32	25	32	1.89
56803284--56803313	15	2.0	15	93	0	51	10	13	26	50	1.73
56805088--56805197	54	2.0	54	94	0	193	21	26	16	35	1.94
56810418--56810457	21	2.0	20	85	5	53	10	32	25	32	1.89
56822770--56823796	40	25.7	40	90	4	1644	21	26	21	31	1.98
56822770--56823796	80	12.8	80	99	0	1993	21	26	21	31	1.98
56831469--56831670	101	2.0	101	99	0	395	26	24	17	31	1.97
56832303--56832729	40	10.7	40	95	0	764	22	27	20	30	1.98
56835903--56836008	50	2.1	50	98	0	203	34	18	23	22	1.96
56836206--56836441	118	2.0	118	86	3	332	28	23	17	30	1.97
56841919--56841963	3	15.3	3	95	4	83	68	0	31	0	0.89
56844991--56845116	46	2.7	46	80	9	141	21	27	21	29	1.98
56849409--56849577	46	3.7	46	78	13	193	28	28	20	21	1.98
56849414--56849584	93	1.8	93	92	0	288	28	28	21	21	1.99
56856909--56857079	93	1.8	93	87	0	252	29	28	20	22	1.98
56858489--56858562	36	2.1	36	100	0	148	31	31	18	18	1.96
56862088--56862128	22	1.9	21	85	5	55	19	26	41	12	1.87
56867286--56867338	24	2.3	23	90	3	79	50	16	20	11	1.76
56867504--56867631	29	4.6	29	83	6	156	25	16	29	28	1.97
56869608--56870414	3	269.0	3	100	0	1614	66	0	33	0	0.92
56875975--56876031	22	2.7	22	91	5	91	45	21	0	33	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56878488--56878665	27	6.6	27	84	3	205	29	28	15	26	1.96
56878509--56878664	82	1.9	81	88	3	233	29	28	15	26	1.96
56897332--56897507	46	3.8	46	79	12	225	19	20	30	29	1.97
56897329--56897500	93	1.8	93	97	0	326	19	20	30	28	1.97
56902732--56902779	20	2.4	20	100	0	96	27	39	25	8	1.84
56910853--56911004	43	3.6	42	74	12	123	28	16	25	29	1.97
56910853--56910959	42	2.5	43	82	7	121	28	16	22	31	1.96
56911993--56914656	890	3.0	890	92	0	4357	26	17	25	31	1.97
56917363--56917702	107	3.2	107	87	2	459	32	9	19	38	1.83
56917363--56917702	80	4.2	82	81	4	354	32	9	19	38	1.83
56917363--56917702	27	12.7	27	80	4	357	32	9	19	38	1.83
56917986--56918074	28	3.2	28	86	0	124	25	35	16	21	1.94
56918932--56918969	15	2.5	15	86	0	58	26	31	18	23	1.97
56920361--56920633	49	5.8	49	75	12	234	28	20	28	22	1.98
56925947--56926260	48	6.7	47	79	11	299	22	28	19	28	1.98
56925948--56926260	138	2.2	141	81	7	352	22	29	19	28	1.98
56925998--56926264	94	2.9	91	79	10	303	23	28	19	28	1.98
56931269--56931446	94	1.9	93	89	3	277	24	28	17	29	1.98
56943902--56944135	91	2.5	94	80	4	242	27	20	24	27	1.99
56943907--56944135	48	4.9	48	73	11	179	27	20	24	27	1.99
56947684--56947768	44	2.0	43	90	2	134	34	30	10	24	1.89
56957899--56958075	51	3.5	50	82	4	212	28	29	12	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56960669--56960698	15	2.0	15	93	0	51	56	13	0	30	1.37
56971381--56971442	31	2.0	31	93	0	106	16	22	27	33	1.95
56978179--56978279	50	2.0	50	98	0	193	39	13	10	35	1.80
56986743--56986825	42	2.0	42	97	0	157	31	10	16	40	1.83
56989666--56989819	43	3.6	44	82	11	167	27	20	29	23	1.99
56990393--56990717	163	2.0	163	98	0	623	40	8	21	29	1.84
57009408--57009432	13	1.9	13	100	0	50	8	32	40	20	1.81
57030369--57030562	48	4.0	48	85	4	239	27	30	17	24	1.97
57042101--57042578	239	2.0	239	100	0	956	35	11	19	33	1.88
57043634--57044035	50	8.0	50	79	3	412	24	17	26	31	1.97
57043694--57043974	101	2.8	101	96	1	510	23	19	26	30	1.98
57043643--57044035	151	2.6	151	82	2	448	24	18	25	31	1.98
57049795--57049862	28	2.5	27	73	7	66	33	20	20	25	1.97
57050885--57050947	31	2.1	29	82	5	72	34	6	22	36	1.80
57051702--57051822	46	2.6	47	89	2	190	37	13	23	26	1.91
57051801--57051997	55	3.6	54	86	4	263	36	18	24	20	1.95
57059246--57059354	57	1.9	58	86	1	157	29	28	18	23	1.98
57059566--57059917	40	8.8	40	93	0	587	25	29	21	23	1.99
57062789--57063137	85	4.1	85	99	0	689	26	26	8	38	1.85
57064448--57064500	18	2.8	18	75	18	54	60	1	9	28	1.38
57066887--57067077	42	4.5	42	84	1	231	21	27	31	18	1.97
57070133--57070239	53	2.0	52	94	1	187	44	26	8	19	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57072133--57072239	55	2.0	54	83	1	133	25	26	23	25	2.00
57074182--57074238	29	2.0	28	83	12	73	33	5	26	35	1.79
57074643--57074802	43	3.7	43	76	8	130	27	19	23	29	1.98
57074653--57074811	85	1.9	85	82	5	205	25	19	25	29	1.98
57076405--57076554	40	3.8	40	94	0	255	30	27	20	22	1.98
57076389--57076566	80	2.2	80	89	4	272	27	26	21	24	1.99
57084346--57084530	40	4.7	40	93	0	309	28	25	21	24	1.99
57101711--57101833	47	2.6	45	76	13	126	27	17	30	24	1.97
57101716--57101886	46	3.7	46	76	6	175	27	18	29	25	1.98
57101720--57101974	138	1.8	141	80	9	306	28	18	28	25	1.98
57111695--57111719	12	2.1	12	100	0	50	16	28	32	24	1.96
57115310--57115375	27	2.5	28	82	5	75	27	19	16	36	1.93
57117329--57117425	43	2.3	43	84	12	128	30	27	15	25	1.96
57131844--57131881	20	1.9	20	84	10	51	52	21	26	0	1.47
57133696--57133788	47	2.0	47	91	4	152	44	22	17	16	1.87
57134183--57134367	79	2.3	82	82	7	220	25	27	22	24	2.00
57134183--57134367	40	4.6	41	79	9	195	25	27	22	24	2.00
57134747--57134814	34	2.0	34	97	0	127	36	17	11	33	1.86
57135613--57135704	28	3.2	27	69	18	78	16	27	6	50	1.69
57135591--57135706	58	2.0	58	93	3	198	17	25	6	51	1.67
57136356--57136502	50	3.0	50	86	6	230	19	31	22	27	1.97
57137627--57137770	73	2.0	73	97	0	270	27	30	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57142354--57142445	39	2.3	39	88	5	132	25	28	22	23	2.00
57142335--57142498	40	4.1	40	80	10	176	24	27	23	25	2.00
57150065--57150197	69	1.9	70	87	1	196	32	13	18	36	1.89
57150955--57151343	39	9.9	39	83	2	366	22	21	26	29	1.99
57150977--57151283	79	3.9	79	83	3	348	23	21	26	28	1.99
57150971--57151304	119	2.8	119	84	3	440	22	21	26	28	1.99
57150953--57151363	158	2.6	158	83	1	502	23	21	26	29	1.99
57153932--57154109	89	2.0	89	97	0	338	28	11	24	35	1.90
57154296--57154325	12	2.5	12	100	0	60	50	6	0	43	1.28
57156674--57156707	14	2.3	15	90	5	52	38	23	5	32	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276