genome.fa.s12.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  108  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34177916--34177963	24	2.0	24	88	12	71	52	8	2	37	1.44
34178459--34178498	14	3.0	14	92	7	66	22	20	0	57	1.41
34183333--34183369	14	2.9	12	92	8	56	21	18	0	59	1.38
34194025--34194065	21	1.9	22	85	5	57	39	4	24	31	1.76
34198916--34198993	40	2.0	40	94	0	138	21	19	29	29	1.98
34200887--34201064	27	6.6	27	83	3	205	26	15	28	29	1.96
34200888--34201043	82	1.9	81	88	3	233	26	15	28	29	1.96
34200884--34201064	82	2.2	81	83	2	229	27	15	27	29	1.96
34211143--34211217	36	2.1	36	100	0	150	32	8	13	46	1.72
34219353--34219615	40	6.6	40	88	3	325	26	27	20	24	1.99
34227305--34227567	40	6.6	40	88	3	325	26	27	20	24	1.99
34230616--34230786	46	3.7	47	77	9	179	23	28	19	27	1.99
34230616--34230789	94	1.9	92	84	4	233	24	28	20	27	1.99
34236322--34236419	33	3.0	33	96	0	178	29	5	18	46	1.70
34236344--34236403	17	3.6	16	73	22	61	26	5	16	51	1.65
34236329--34236423	16	5.8	16	71	22	81	28	4	21	46	1.70
34237722--34237801	42	1.9	42	87	5	117	32	10	27	30	1.89
34245034--34245065	16	2.0	16	100	0	64	56	31	12	0	1.37
34245492--34245746	125	2.0	125	96	0	465	30	18	23	27	1.97
34250242--34250424	79	2.3	81	82	7	214	25	27	22	24	2.00
34250221--34250424	40	5.1	40	80	8	220	25	27	22	25	1.99
34251554--34251673	56	2.1	56	98	0	231	22	23	9	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34256988--34257114	49	2.6	49	87	2	175	29	21	26	22	1.99
34257069--34257328	136	1.9	135	89	2	405	24	20	25	29	1.99
34258438--34258476	21	1.9	20	84	5	51	10	33	30	25	1.89
34260027--34260141	27	4.3	27	82	0	149	27	19	18	34	1.95
34260126--34260302	27	6.6	27	75	8	123	29	10	20	38	1.87
34260041--34260168	54	2.4	54	81	2	141	28	16	19	35	1.94
34260026--34260195	81	2.1	80	77	8	175	28	15	18	37	1.92
34260181--34260302	26	4.6	26	78	12	124	30	10	20	38	1.87
34266692--34266843	27	5.6	27	92	3	232	27	13	28	30	1.94
34266692--34266843	55	2.8	55	92	0	241	27	13	28	30	1.94
34270830--34270868	21	1.9	20	84	5	51	15	30	25	28	1.96
34273224--34273292	35	2.0	35	94	0	120	39	17	11	31	1.85
34275470--34275636	46	3.6	45	75	10	149	29	19	26	23	1.98
34275516--34275687	94	1.8	95	84	3	240	28	19	27	25	1.98
34276170--34276214	23	2.0	23	95	0	81	35	8	46	8	1.66
34293326--34294206	441	2.0	441	99	0	1744	32	14	21	31	1.93
34306532--34306652	46	2.6	48	86	4	165	28	19	28	23	1.98
34306581--34306797	49	4.5	48	72	13	153	26	19	29	24	1.99
34322493--34322706	46	4.7	47	75	9	192	25	28	17	28	1.98
34327017--34327140	46	2.7	45	85	7	162	24	27	19	29	1.98
34342467--34342516	24	2.1	24	92	0	82	34	0	4	62	1.14
34345442--34345551	55	2.0	55	83	0	139	40	13	5	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34350190--34350240	6	8.5	6	74	8	50	76	5	3	13	1.11
34360645--34360690	23	2.0	23	91	0	74	26	8	39	26	1.85
34364864--34364986	62	2.0	62	98	0	237	27	7	23	41	1.81
34364953--34365003	25	2.0	25	96	0	93	23	11	11	52	1.70
34368126--34368197	30	2.4	30	97	0	135	38	8	25	27	1.84
34368678--34368900	48	4.7	47	76	11	161	26	17	30	25	1.98
34373930--34373982	5	9.8	5	78	11	52	75	1	1	20	0.99
34373912--34373961	22	2.2	23	86	10	68	78	6	0	16	0.95
34375476--34375508	16	2.0	17	94	5	59	66	6	6	21	1.35
34375541--34375598	17	3.1	19	73	12	57	68	1	6	22	1.22
34377556--34377605	27	1.9	27	88	8	77	68	10	8	14	1.40
34377628--34377661	17	2.1	16	88	5	50	73	0	5	20	1.04
34379959--34380404	53	8.4	53	79	9	446	23	23	17	35	1.95
34380052--34380344	100	2.8	100	80	11	299	24	23	16	35	1.95
34380459--34380544	45	1.9	45	92	0	145	19	26	19	33	1.96
34380550--34380633	44	1.9	44	82	4	107	27	22	11	38	1.89
34381018--34381065	24	2.0	24	91	0	78	39	33	8	18	1.81
34381805--34381846	21	2.0	21	100	0	84	42	14	14	28	1.84
34382397--34382441	21	2.1	21	95	0	81	17	4	24	53	1.62
34382402--34382447	21	2.2	21	88	0	65	15	6	23	54	1.64
34392059--34392097	18	2.2	18	85	0	51	5	15	7	71	1.26
34392223--34392407	102	1.8	102	89	0	289	38	16	18	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34393116--34393150	18	1.9	18	100	0	70	45	17	20	17	1.85
34397222--34397299	27	2.9	27	80	0	93	39	20	16	23	1.92
34397409--34397446	17	2.2	17	86	9	51	18	42	26	13	1.87
34397412--34397453	18	2.3	18	76	8	50	21	40	26	11	1.88
34399058--34399085	13	2.2	13	100	0	56	28	42	14	14	1.84
34402423--34402646	104	2.2	104	93	1	378	31	31	19	17	1.95
34402975--34403038	30	2.2	29	81	10	76	29	28	6	35	1.82
34402982--34403038	30	1.9	30	85	3	80	29	24	7	38	1.82
34409034--34409124	40	2.3	40	92	3	148	24	19	27	28	1.99
34409034--34409161	40	3.2	40	85	3	134	25	20	27	27	1.99
34416905--34417114	40	5.3	39	89	4	242	25	21	27	25	1.99
34416852--34417114	120	2.2	120	82	4	309	25	21	27	25	1.99
34416853--34417149	80	3.7	80	81	6	230	26	21	27	24	1.99
34422288--34422647	47	7.6	45	71	15	173	27	18	28	25	1.98
34422288--34422650	46	7.7	46	75	10	215	27	18	28	25	1.98
34428366--34428490	42	3.0	42	83	8	157	24	13	29	32	1.93
34434234--34434271	17	2.4	15	91	8	58	21	36	0	42	1.53
34438028--34438053	12	2.2	12	100	0	52	46	30	0	23	1.53
34451222--34451299	6	14.8	5	72	19	54	75	2	3	17	1.07
34451242--34451304	6	10.8	6	77	13	60	77	3	3	15	1.02
34451232--34451294	17	3.7	17	83	8	74	74	3	4	17	1.12
34451222--34451304	11	7.0	11	77	12	67	75	2	3	18	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34451223--34451301	17	4.6	18	78	12	67	75	2	3	17	1.06
34456669--34456693	13	1.9	13	100	0	50	48	8	0	44	1.32
34458053--34458406	27	13.1	27	82	1	307	44	20	13	22	1.86
34458053--34458406	54	6.6	53	84	2	350	44	20	13	22	1.86
34458053--34458407	81	4.4	81	83	4	360	43	20	13	22	1.86
34458736--34458778	22	1.9	23	95	4	79	18	4	48	27	1.68
34460865--34460890	13	2.0	13	100	0	52	30	0	15	53	1.42
34463423--34463463	20	2.0	22	90	9	68	14	7	2	75	1.12
34465678--34465717	6	6.7	6	85	0	53	10	5	2	82	0.91
34468337--34468378	21	1.9	23	85	9	61	23	4	14	57	1.56
34468647--34468697	24	2.1	24	96	0	93	43	11	19	25	1.85
34470014--34470065	26	2.0	26	96	0	95	11	40	3	44	1.59
34470842--34470924	27	3.1	27	84	3	105	43	18	18	20	1.88
34481861--34481900	21	2.0	20	85	14	55	45	20	0	35	1.51
34484028--34484102	37	2.0	37	97	0	141	42	14	8	34	1.75
34485105--34485261	71	2.2	70	86	4	226	35	19	16	29	1.93
34489313--34489370	13	4.3	13	77	16	55	75	0	17	6	1.01
34489921--34489959	11	3.5	11	85	3	51	2	7	2	87	0.73
34492587--34492621	17	1.9	19	88	11	56	34	20	0	45	1.51
34495525--34495572	22	2.0	24	84	11	64	50	2	8	39	1.44
34495673--34495714	20	2.1	20	86	8	59	47	4	9	38	1.57
34503040--34503077	20	1.9	20	100	0	76	34	13	21	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34503126--34503232	24	4.4	24	85	4	153	30	18	20	29	1.97
34509724--34509895	45	3.9	45	90	3	244	25	29	22	23	1.99
34510522--34510738	45	4.9	45	93	2	343	25	29	22	23	1.99
34511276--34511465	47	4.0	47	93	0	317	43	14	13	28	1.84
34516067--34516125	20	3.0	20	100	0	118	35	8	20	35	1.83
34523158--34523228	35	2.0	35	91	0	115	28	30	23	16	1.97
34526865--34526913	17	3.2	16	78	18	59	71	0	2	26	0.97
34526865--34526915	7	7.0	7	79	20	52	70	0	1	27	0.98
34526865--34526909	24	2.0	22	91	8	72	71	0	2	26	0.98
34529488--34529665	27	6.6	27	83	3	205	26	15	28	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276