genome.fa.s12.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  144  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46959942--46960118	79	2.2	79	88	5	252	24	23	28	24	2.00
46966838--46966920	42	2.0	42	97	0	157	14	4	32	48	1.65
46972528--46972573	24	1.9	24	86	8	67	34	28	21	15	1.94
46978321--46978471	42	3.6	42	87	2	207	21	15	25	36	1.94
46978321--46978506	83	2.2	85	79	11	208	22	16	24	37	1.93
46981077--46981164	34	2.6	34	85	1	106	28	22	22	26	1.99
46987883--46988107	40	5.7	39	86	3	263	25	28	23	23	1.99
46987883--46988107	79	2.8	78	82	5	272	25	28	23	23	1.99
46996067--46996250	40	4.6	40	83	5	205	25	29	22	22	1.99
46999728--46999771	23	1.9	23	95	0	79	36	18	6	38	1.77
47003857--47003965	37	2.9	37	94	2	184	25	31	20	22	1.98
47004112--47004210	48	2.0	48	92	5	164	28	26	10	35	1.89
47004128--47004332	47	4.3	47	85	4	245	25	28	11	34	1.91
47004128--47004332	94	2.2	95	86	7	276	25	28	11	34	1.91
47007850--47008240	40	9.8	40	89	0	559	25	27	22	24	2.00
47008040--47008146	23	5.2	23	58	25	58	24	27	23	25	2.00
47009494--47009606	37	3.1	37	96	0	199	27	30	19	22	1.98
47009753--47009851	48	2.0	48	92	5	164	28	26	10	35	1.89
47010021--47010137	56	2.1	56	95	0	207	44	13	17	24	1.85
47016618--47017085	48	9.8	48	76	0	398	26	18	27	27	1.98
47016614--47017085	96	4.9	96	88	0	683	26	18	27	27	1.98
47020222--47020350	47	2.8	46	77	13	147	25	19	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47020222--47020357	46	2.9	46	80	10	134	25	19	30	25	1.98
47024688--47024720	10	3.4	10	87	8	50	63	12	24	0	1.28
47025744--47025768	13	1.9	13	100	0	50	32	0	8	60	1.26
47033749--47033778	14	2.1	14	100	0	60	20	6	16	56	1.62
47034209--47034233	13	1.9	13	100	0	50	24	0	20	56	1.43
47037730--47038345	47	13.1	47	90	6	926	27	29	11	32	1.91
47038202--47038324	23	5.3	22	63	30	60	25	30	13	31	1.93
47048587--47048747	46	3.5	46	80	9	143	24	31	18	26	1.97
47049921--47049972	25	2.1	25	85	7	70	28	7	32	30	1.85
47052538--47052655	47	2.5	47	91	0	182	34	6	28	29	1.83
47052615--47052928	162	1.9	162	100	0	628	26	19	25	28	1.99
47052936--47053014	37	2.1	37	90	0	122	24	18	31	25	1.98
47054548--47054617	34	2.1	34	83	0	86	22	27	22	27	1.99
47055040--47055080	18	2.3	19	83	12	59	24	39	19	17	1.92
47057303--47057473	93	1.8	93	92	0	288	27	28	22	21	1.99
47057300--47057470	46	3.7	45	77	14	179	28	27	22	21	1.99
47057893--47057952	30	2.0	30	90	0	93	30	25	8	36	1.85
47064812--47064983	46	3.7	46	76	11	172	28	26	22	22	1.99
47064817--47064987	93	1.8	93	88	2	263	28	27	22	21	1.99
47068594--47068623	11	2.7	11	89	0	51	36	16	20	26	1.93
47069596--47069646	27	1.9	26	84	4	66	35	19	27	17	1.94
47069902--47069930	8	3.6	8	100	0	58	10	41	27	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47072604--47072781	27	6.6	27	77	6	137	30	28	15	25	1.96
47072604--47072781	54	3.3	54	78	7	164	30	28	15	25	1.96
47081956--47081995	8	5.0	8	90	0	62	7	37	30	25	1.83
47081956--47081992	16	2.3	16	100	0	74	5	40	32	21	1.76
47090962--47090987	13	2.0	13	100	0	52	46	0	30	23	1.53
47092303--47092509	39	5.3	39	91	2	310	25	21	27	25	1.99
47092248--47092509	39	6.7	40	85	7	260	26	22	27	24	2.00
47092303--47092542	78	3.1	79	86	6	249	27	20	27	25	1.99
47100258--47100770	79	6.5	79	97	0	920	27	21	26	24	1.99
47100258--47100798	40	13.6	40	81	10	623	27	21	26	24	1.99
47105570--47105621	23	2.2	24	96	3	97	50	15	15	19	1.79
47111027--47111338	86	3.6	86	81	5	312	46	12	8	33	1.72
47111324--47111449	63	2.0	63	85	1	173	44	11	11	32	1.76
47111386--47111571	80	2.4	80	84	6	238	38	13	15	32	1.87
47111951--47111979	4	7.2	4	100	0	58	75	0	0	24	0.80
47118493--47118756	27	9.7	27	78	7	178	38	21	7	32	1.81
47118604--47118756	53	2.9	54	79	5	168	44	21	6	27	1.77
47118767--47118819	27	2.0	27	88	7	81	39	13	13	33	1.83
47118872--47118962	27	3.4	26	80	7	94	35	23	24	17	1.95
47118885--47118962	27	2.9	27	86	3	95	33	24	23	19	1.97
47119764--47119961	26	7.7	26	85	0	256	27	22	22	28	1.99
47119764--47119961	52	3.8	52	89	1	310	27	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47120109--47120200	42	2.2	42	92	0	148	29	14	21	34	1.93
47120224--47120307	31	2.7	31	92	1	143	32	17	22	27	1.97
47143874--47143938	32	2.0	34	84	6	89	24	23	27	24	2.00
47146920--47146979	29	2.1	29	87	6	86	28	15	21	35	1.93
47160240--47160266	13	2.1	13	100	0	54	29	0	22	48	1.51
47178213--47178476	40	6.7	40	89	5	360	25	21	27	25	1.99
47178213--47178509	119	2.5	118	81	9	338	26	21	27	25	1.99
47190788--47190814	13	2.1	13	100	0	54	29	0	22	48	1.51
47199814--47199939	46	2.7	46	93	2	209	21	21	26	30	1.98
47214737--47214835	28	3.5	29	83	6	114	30	27	15	27	1.96
47216751--47216895	40	3.7	40	82	10	165	24	22	27	24	2.00
47216751--47216928	40	4.5	40	80	10	116	26	21	27	24	1.99
47216751--47216901	79	1.9	80	82	6	191	25	22	27	23	2.00
47216804--47216928	39	3.2	40	82	6	105	27	20	28	24	1.99
47224299--47224481	40	4.6	40	80	6	194	24	26	22	26	2.00
47224787--47224865	29	2.7	29	82	5	97	27	31	15	25	1.95
47224847--47224949	43	2.4	43	96	0	197	27	35	14	22	1.93
47226815--47226893	37	2.1	37	88	4	115	25	30	18	25	1.98
47227012--47227467	47	9.7	47	96	0	826	29	30	8	32	1.87
47227228--47227301	22	3.3	22	64	17	62	28	31	10	29	1.91
47227012--47227467	233	1.9	234	95	0	833	29	30	8	32	1.87
47228606--47228647	18	2.3	18	100	0	84	42	19	4	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47236010--47236038	11	2.6	11	100	0	58	31	10	17	41	1.83
47238895--47239105	46	4.6	44	76	16	169	26	18	30	25	1.98
47247465--47247568	27	3.8	27	82	12	115	35	24	24	16	1.95
47247464--47247568	54	1.9	54	83	7	133	36	23	23	16	1.94
47252557--47252726	46	3.7	45	79	7	180	22	19	28	30	1.98
47254546--47254625	15	5.4	15	75	7	74	11	18	12	57	1.64
47256898--47256972	22	3.3	22	68	17	62	32	12	29	26	1.92
47257085--47257160	22	3.3	22	68	22	66	36	10	28	23	1.88
47256825--47257163	47	7.2	47	88	1	473	34	10	28	25	1.90
47257177--47257267	46	2.0	46	86	0	128	34	6	32	26	1.82
47258714--47258865	40	3.8	40	90	2	236	24	23	26	25	2.00
47258905--47259033	29	4.5	28	78	8	118	21	17	30	31	1.96
47258873--47259040	57	2.9	57	89	0	246	22	17	29	30	1.97
47258877--47259033	28	5.6	27	77	8	143	21	18	29	30	1.97
47260618--47260802	40	4.7	40	78	8	146	25	27	22	24	2.00
47265665--47265788	22	5.4	22	65	24	76	33	12	29	25	1.93
47265613--47265870	94	2.7	93	85	3	331	33	11	29	25	1.91
47265592--47265836	47	5.2	47	89	0	364	33	11	28	26	1.90
47265850--47265940	46	2.0	46	86	0	128	34	6	31	27	1.83
47271464--47271736	40	6.8	40	92	0	438	29	19	27	23	1.98
47280346--47280618	40	6.8	40	92	0	438	29	19	27	23	1.98
47283156--47284496	49	27.8	49	97	0	2292	27	28	9	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47287061--47287164	51	2.1	49	80	5	111	34	15	12	37	1.85
47288958--47289001	21	2.1	21	100	0	88	36	29	11	22	1.89
47291279--47291350	12	6.2	11	72	15	56	15	2	8	73	1.18
47291279--47291350	18	4.1	18	72	10	60	15	2	8	73	1.18
47291296--47291350	24	2.4	24	88	11	80	14	3	9	72	1.23
47291279--47291332	6	9.0	6	81	0	63	16	3	5	74	1.16
47292308--47292346	20	1.9	21	89	5	62	76	0	15	7	0.99
47293302--47293894	295	2.0	295	100	0	1186	30	13	15	40	1.85
47294730--47294841	7	16.0	7	84	0	107	32	27	0	39	1.63
47296557--47296800	63	3.9	63	83	3	294	35	32	4	27	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276