genome.fa.s12.2.7.7.80.10.50.1000.276.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  276  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91284365--91284451	25	3.7	25	76	15	89	19	3	1	75	1.00
91284359--91284442	29	2.8	29	80	5	96	17	3	1	77	0.98
91285458--91285639	96	1.9	97	89	1	285	26	15	26	31	1.96
91286281--91286323	10	4.3	10	82	11	61	20	6	2	69	1.23
91298498--91298544	19	2.4	20	82	13	62	76	4	12	6	1.12
91298556--91298598	20	2.2	19	83	4	50	69	4	25	0	1.07
91299468--91299574	41	2.8	38	83	8	119	26	14	22	36	1.93
91299505--91299603	41	2.4	41	81	1	110	26	14	24	35	1.93
91299795--91299850	16	3.6	16	76	11	62	33	1	25	39	1.66
91299974--91300051	39	2.0	39	100	0	156	25	10	7	56	1.59
91309985--91310038	28	1.9	28	85	7	74	24	7	3	64	1.35
91309985--91310038	29	1.9	27	82	14	65	24	7	3	64	1.35
91313890--91313946	25	2.3	24	79	11	62	38	24	21	15	1.92
91313930--91313994	24	2.7	24	74	9	60	35	20	24	20	1.96
91316594--91316632	7	5.6	7	96	0	69	48	25	12	12	1.77
91317947--91318007	20	3.2	19	72	15	54	40	1	4	52	1.33
91331940--91331991	24	2.2	24	92	0	86	48	15	9	26	1.76
91331946--91331993	24	2.0	24	100	0	96	41	16	12	29	1.85
91332059--91332101	20	2.2	19	87	4	59	69	2	2	25	1.12
91337077--91337126	26	2.0	24	84	7	64	62	6	0	32	1.20
91343388--91343435	25	1.9	25	82	0	60	29	8	10	52	1.65
91349937--91349972	18	2.0	18	88	0	54	36	5	8	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91351743--91351778	17	2.1	17	100	0	72	66	11	5	16	1.40
91353918--91354025	30	3.4	29	68	18	72	28	15	25	29	1.96
91353901--91354054	66	2.3	66	85	0	200	30	16	24	28	1.97
91360809--91360855	5	9.4	5	81	9	60	42	19	0	38	1.51
91362060--91362112	14	3.8	14	94	0	88	35	9	20	33	1.85
91379354--91379389	18	2.1	17	94	5	63	38	16	0	41	1.49
91380033--91380068	15	2.3	17	86	13	51	52	2	0	44	1.15
91391183--91391227	19	2.3	19	92	3	72	28	17	13	40	1.88
91391191--91391228	19	2.0	19	100	0	76	26	21	15	36	1.93
91392977--91393079	15	6.9	15	76	5	84	19	9	62	8	1.52
91392989--91393079	30	3.1	30	85	6	114	18	9	63	7	1.48
91397591--91397678	26	3.5	25	77	20	78	35	7	4	52	1.51
91397750--91397826	13	5.9	13	71	15	52	35	2	3	58	1.30
91397960--91398013	26	2.0	27	85	7	74	40	9	1	48	1.46
91398081--91398131	16	3.2	15	79	17	50	35	3	1	58	1.28
91406853--91406883	16	1.9	16	93	0	53	48	12	6	32	1.67
91407035--91407071	19	2.0	19	89	5	58	37	0	8	54	1.30
91407182--91407211	9	3.3	9	90	0	51	30	10	13	46	1.75
91407836--91407878	21	2.0	21	100	0	86	60	4	4	30	1.37
91407884--91407922	19	2.0	20	90	5	62	53	5	5	35	1.45
91411550--91411596	3	15.7	3	100	0	94	34	0	0	65	0.93
91413231--91413281	3	17.0	3	76	15	52	33	0	1	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91413231--91413281	15	3.4	15	89	5	68	33	0	1	64	1.05
91422352--91422563	111	1.9	111	85	3	293	24	33	12	30	1.92
91424168--91424386	87	2.5	91	78	10	220	38	17	6	36	1.76
91424564--91424633	18	3.7	18	78	5	68	58	2	2	35	1.28
91424562--91424644	18	4.5	17	73	13	58	57	2	2	37	1.25
91424852--91424978	19	6.6	19	73	9	105	27	3	1	66	1.18
91424856--91424976	39	3.1	40	77	8	106	25	4	1	68	1.16
91424855--91424978	40	3.2	39	78	10	114	26	4	1	67	1.17
91424852--91424978	9	13.2	9	71	17	78	27	3	1	66	1.18
91424915--91425012	31	3.2	29	74	20	85	29	1	3	66	1.13
91424966--91425016	20	2.4	21	77	6	59	31	0	1	66	1.03
91424914--91425017	19	5.4	19	70	15	61	29	0	2	66	1.13
91428608--91428649	12	3.6	12	81	18	52	52	4	0	42	1.22
91431717--91431783	29	2.3	29	92	0	107	52	8	13	25	1.69
91431740--91431783	14	3.0	15	80	6	63	54	6	11	27	1.61
91434786--91434814	6	4.8	6	100	0	58	17	0	0	82	0.66
91437920--91438057	40	3.5	40	82	0	168	30	12	21	36	1.90
91438223--91438375	76	2.0	76	94	0	270	35	13	20	30	1.91
91449635--91449688	24	2.2	24	75	18	58	42	0	1	55	1.10
91460712--91460844	43	3.1	41	64	19	110	35	3	6	54	1.45
91460710--91460889	86	2.1	86	98	0	351	36	3	6	53	1.42
91460717--91460837	28	4.2	29	66	30	82	35	4	6	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91460748--91460890	45	3.3	45	66	18	129	37	2	6	53	1.41
91460990--91461039	25	2.0	25	92	0	82	44	12	2	42	1.53
91462880--91462912	16	2.1	16	100	0	66	30	9	12	48	1.71
91467127--91467187	30	2.0	30	100	0	122	36	0	0	63	0.94
91470017--91470084	35	1.9	35	87	0	100	39	10	25	25	1.87
91471751--91471985	118	2.0	118	94	1	418	27	16	29	26	1.97
91475275--91475346	35	2.1	35	91	0	117	36	12	25	26	1.91
91477698--91477722	13	1.9	13	100	0	50	72	0	16	12	1.13
91478729--91478846	51	2.2	53	82	7	134	16	16	23	44	1.86
91478992--91479026	18	1.9	18	88	0	52	45	14	17	22	1.84
91484824--91484948	66	1.9	65	82	8	155	19	24	27	29	1.98
91487275--91487326	26	2.0	26	88	0	77	30	15	13	40	1.86
91492022--91492069	23	2.0	24	96	4	89	62	8	0	29	1.24
91494464--91494488	9	2.8	9	100	0	50	8	44	0	48	1.32
91503371--91503433	12	5.2	12	74	16	58	12	9	0	77	0.98
91503364--91503437	36	2.0	37	94	2	132	14	10	0	74	1.07
91508811--91509050	125	1.9	125	94	0	426	33	15	14	37	1.87
91510028--91510109	43	1.9	42	92	2	137	41	15	12	30	1.84
91516273--91516306	12	2.8	12	90	0	50	32	44	0	23	1.54
91517644--91517683	21	2.0	20	85	5	53	40	2	0	57	1.12
91517699--91517750	23	2.2	24	87	12	74	38	0	0	61	0.96
91518647--91518686	21	2.0	20	85	5	53	40	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91518702--91518753	23	2.2	24	87	12	74	38	0	0	61	0.96
91519892--91519974	33	2.5	33	76	5	96	49	6	0	44	1.27
91521644--91521695	28	1.9	26	85	14	70	50	0	5	44	1.26
91527514--91527566	18	2.9	18	91	0	88	26	13	26	33	1.93
91530278--91530312	18	1.9	18	94	0	61	31	25	14	28	1.95
91532522--91532573	18	2.9	18	91	0	86	26	15	25	32	1.95
91536982--91537015	16	2.1	17	88	5	52	41	5	23	29	1.78
91538555--91538589	18	1.9	18	94	0	61	31	25	14	28	1.95
91539699--91539787	18	4.8	18	81	10	99	31	12	22	33	1.91
91541144--91541178	18	1.9	18	94	0	61	28	14	25	31	1.95
91545574--91545746	86	2.0	86	100	0	346	30	13	15	41	1.85
91548125--91548174	25	2.0	25	100	0	100	56	4	12	28	1.54
91548717--91548775	21	2.8	22	80	7	61	22	0	8	69	1.15
91549094--91549184	38	2.4	39	83	9	107	20	5	25	48	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276

The End!