genome.fa.s12.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  138  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44896543--44896662	56	2.2	56	96	1	224	42	26	7	23	1.80
44898032--44898090	29	2.0	29	96	0	109	32	8	13	45	1.74
44899338--44899367	15	2.0	15	93	0	51	50	0	10	40	1.36
44900781--44900887	6	16.3	6	72	20	56	71	3	19	4	1.19
44900836--44900884	13	3.5	13	83	10	62	73	2	22	2	1.04
44900776--44900887	28	4.1	27	71	17	74	72	3	19	4	1.17
44907605--44907658	22	2.5	22	100	0	108	29	31	5	33	1.80
44939013--44939163	43	3.5	44	79	9	132	25	15	25	33	1.95
44947644--44947694	26	1.9	27	88	4	77	64	0	5	29	1.17
44949630--44949797	45	3.7	45	80	3	185	38	14	21	25	1.92
44949632--44949795	90	1.8	90	81	2	204	38	14	21	25	1.91
44949766--44949932	46	3.6	45	85	3	210	46	13	19	20	1.83
44951314--44951390	18	4.3	17	70	16	57	36	3	2	57	1.31
44958676--44958797	55	2.2	55	77	0	127	24	27	28	18	1.98
44972425--44972449	13	1.9	13	100	0	50	0	12	0	88	0.53
44982610--44982644	12	2.8	13	82	8	54	5	28	0	65	1.15
44982667--44982708	11	3.6	11	81	12	57	59	4	0	35	1.19
44985411--44985456	23	2.0	23	95	0	83	32	13	17	36	1.88
44985850--44986047	20	9.9	20	76	4	114	46	16	25	11	1.81
44985841--44986024	60	3.1	59	82	6	219	45	16	25	12	1.83
44985875--44986044	40	4.2	40	77	3	128	45	17	24	11	1.82
44985860--44986047	60	3.1	60	80	6	220	47	16	24	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44991548--44991577	8	3.8	8	90	0	51	43	26	26	3	1.70
44991967--44992078	27	4.1	27	85	3	127	16	24	23	35	1.95
44991967--44992078	54	2.1	54	88	3	163	16	24	23	35	1.95
45001900--45002005	43	2.5	43	80	9	126	30	15	22	32	1.94
45006594--45006648	21	2.7	20	80	5	65	23	3	3	69	1.21
45007032--45007068	6	6.2	6	100	0	74	16	67	16	0	1.23
45012133--45012165	17	1.9	17	100	0	66	15	36	6	42	1.71
45019822--45019859	19	2.0	20	84	5	51	39	0	13	47	1.42
45020455--45020510	25	2.2	24	79	14	60	33	7	17	41	1.77
45023597--45023774	27	6.6	27	84	3	205	29	28	15	26	1.96
45023618--45023773	82	1.9	81	88	3	233	29	28	15	26	1.96
45031660--45031837	27	6.6	27	84	3	205	29	28	15	26	1.96
45031681--45031836	82	1.9	81	88	3	233	29	28	15	26	1.96
45043603--45043652	20	2.5	20	93	0	82	14	32	36	18	1.90
45044447--45044595	52	2.8	52	84	5	192	31	26	16	24	1.97
45063217--45063301	41	2.0	42	82	6	102	17	21	34	27	1.96
45065733--45065775	21	2.0	21	82	8	52	46	4	9	39	1.57
45070157--45070228	35	2.1	35	100	0	144	38	30	2	27	1.71
45070894--45071011	21	5.6	21	69	6	69	47	18	20	13	1.82
45070913--45071011	42	2.4	42	81	6	103	48	18	20	13	1.80
45071991--45072017	5	5.4	5	100	0	54	18	0	0	81	0.69
45080644--45080720	18	4.3	18	77	6	57	36	14	11	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45080661--45080725	18	3.6	18	78	0	58	33	15	12	38	1.85
45083319--45083354	13	2.8	13	82	0	54	27	16	2	52	1.57
45089009--45089064	25	2.3	26	84	9	73	60	1	0	37	1.07
45090439--45090477	17	2.2	18	86	4	53	35	2	12	48	1.55
45090754--45090788	18	1.9	18	94	0	61	54	20	17	8	1.68
45090914--45090967	17	3.3	17	74	7	58	68	7	7	16	1.36
45091398--45091425	14	2.0	14	100	0	56	85	0	0	14	0.59
45094558--45094667	18	6.5	15	82	17	87	37	10	15	36	1.83
45094556--45094681	35	3.5	36	86	11	186	37	10	15	37	1.81
45094556--45094681	54	2.3	54	98	0	243	37	10	15	37	1.81
45094556--45094681	19	6.9	19	88	10	201	37	10	15	37	1.81
45094556--45094704	19	7.8	22	85	11	94	36	9	15	38	1.80
45097676--45097728	14	3.7	14	79	20	65	22	22	11	43	1.85
45100640--45100721	40	2.0	40	88	4	121	23	31	23	21	1.98
45105873--45105960	1	88.0	1	70	0	50	84	0	13	2	0.73
45105875--45105960	8	11.7	7	76	21	79	83	0	13	2	0.74
45105874--45105960	21	4.0	21	81	11	93	83	0	13	2	0.73
45106014--45106077	8	8.7	7	76	20	60	84	0	14	1	0.70
45106029--45106077	16	3.1	15	85	8	71	85	0	12	2	0.68
45106014--45106077	23	2.9	23	77	9	62	84	0	14	1	0.70
45106976--45107162	44	4.2	43	71	13	155	31	19	22	26	1.98
45106969--45107280	132	2.4	132	95	1	545	31	17	24	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45107224--45107331	44	2.4	44	89	3	162	28	16	28	25	1.97
45107092--45107293	88	2.3	89	74	12	193	30	17	24	27	1.97
45111539--45111862	44	7.4	44	75	8	259	29	16	24	28	1.97
45111539--45111850	132	2.4	131	90	2	482	30	16	24	28	1.97
45111793--45111885	44	2.1	44	93	0	159	30	16	29	24	1.96
45112246--45112408	87	1.9	86	81	6	195	34	17	21	26	1.95
45112005--45112497	260	1.9	260	86	2	713	33	17	22	26	1.96
45112804--45112895	17	5.5	15	80	17	69	36	13	15	34	1.86
45112802--45112927	35	3.5	36	84	11	177	37	12	14	35	1.84
45112802--45112927	54	2.3	54	94	0	225	37	12	14	35	1.84
45112802--45112927	19	6.9	19	84	10	183	37	12	14	35	1.84
45118090--45118117	14	2.0	14	100	0	56	57	7	14	21	1.61
45122141--45122202	30	2.1	30	81	0	70	38	17	9	33	1.83
45122395--45122438	21	2.1	21	91	0	79	40	18	4	36	1.71
45123397--45123453	29	2.0	29	96	0	105	45	10	5	38	1.61
45125049--45125135	43	2.0	43	84	0	111	25	28	18	27	1.98
45129944--45130051	26	4.2	26	93	0	189	36	24	7	32	1.83
45133660--45133730	35	2.0	35	97	0	133	22	29	14	33	1.93
45135505--45135557	26	2.0	27	85	7	74	24	15	22	37	1.92
45136255--45136724	237	2.0	237	94	0	816	30	20	10	38	1.86
45137278--45137385	26	4.2	26	88	4	164	37	23	6	32	1.80
45139718--45139751	18	1.9	17	88	5	50	44	0	2	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45140268--45140363	14	6.8	14	69	7	59	44	29	2	23	1.65
45140347--45140449	51	2.0	51	100	0	206	48	11	1	37	1.51
45140552--45140591	21	1.9	21	89	0	62	45	40	0	15	1.46
45140644--45140688	14	3.2	14	87	0	63	46	28	0	24	1.53
45141043--45141312	144	1.9	144	81	9	338	32	18	19	30	1.96
45143073--45143124	22	2.3	22	87	9	70	38	0	1	59	1.08
45150793--45150822	14	2.1	15	93	6	53	70	0	0	30	0.88
45151716--45151745	11	2.8	11	95	5	53	16	0	0	83	0.65
45152063--45152137	34	2.2	34	97	0	141	41	16	17	25	1.89
45156183--45156216	5	6.6	5	93	6	59	17	0	2	79	0.86
45156171--45156215	21	2.2	21	88	4	65	17	2	6	73	1.15
45156183--45156216	16	2.2	16	94	5	61	17	0	2	79	0.86
45172345--45172383	19	2.1	19	85	0	51	51	0	2	46	1.14
45173454--45173518	32	2.0	32	100	0	130	30	3	33	32	1.73
45180264--45180365	42	2.5	41	79	7	116	24	31	18	25	1.98
45195677--45195765	30	3.0	30	80	8	101	57	15	16	10	1.65
45195677--45195756	15	5.4	15	80	7	92	58	13	17	10	1.62
45195688--45195765	15	5.2	15	78	9	79	56	15	16	11	1.67
45204549--45204598	15	3.6	13	80	19	57	12	32	34	22	1.90
45206898--45207060	73	2.2	73	76	9	170	36	20	24	19	1.95
45206983--45207037	23	2.3	25	84	12	71	29	20	30	20	1.97
45207029--45207089	26	2.3	26	77	5	70	44	21	18	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45210535--45210648	43	2.7	43	81	2	131	32	25	15	26	1.96
45213653--45213755	27	3.8	27	90	0	161	36	14	21	27	1.92
45215979--45216167	37	5.1	37	94	0	306	23	32	19	24	1.97
45225971--45226077	56	1.9	56	84	7	146	28	13	26	32	1.93
45226346--45226388	22	1.9	23	90	4	70	37	2	13	46	1.57
45229717--45229944	48	4.8	48	79	11	254	28	25	19	26	1.99
45239108--45239136	11	2.6	11	100	0	58	41	27	10	20	1.85
45243051--45243143	41	2.3	41	87	7	129	31	16	27	24	1.96
45258576--45258690	31	3.7	31	97	1	214	27	25	17	29	1.97
45258714--45258805	42	2.2	42	96	0	166	33	20	14	31	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276