genome.fa.s12.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  99  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31299312--31299337	13	2.0	13	100	0	52	15	7	38	38	1.76
31299591--31299623	10	3.3	10	91	0	57	36	0	0	63	0.95
31299808--31299987	63	2.9	62	93	4	299	40	10	2	47	1.52
31300035--31300105	24	3.0	24	89	0	115	29	18	8	43	1.79
31300279--31300352	29	2.6	29	95	0	130	45	1	0	52	1.09
31300279--31300364	15	5.9	15	74	15	90	44	1	0	54	1.07
31300476--31300841	9	41.4	9	81	4	370	48	13	1	36	1.54
31300487--31300805	44	7.2	44	96	0	559	47	12	2	36	1.54
31302711--31302735	12	2.1	12	100	0	50	32	8	28	32	1.86
31307167--31307240	29	2.6	29	86	4	96	25	31	16	27	1.96
31315309--31315382	29	2.6	29	86	4	96	25	31	16	27	1.96
31317460--31317607	40	3.7	40	87	5	219	27	22	25	24	2.00
31317460--31317607	79	1.9	80	87	4	219	27	22	25	24	2.00
31317460--31317640	79	2.3	79	83	5	215	28	22	25	24	1.99
31320497--31320525	14	2.1	14	93	6	51	34	0	6	58	1.25
31320940--31321015	21	3.6	21	80	7	91	30	17	50	2	1.60
31321247--31321328	31	2.5	33	78	7	96	14	4	19	60	1.51
31321401--31321433	17	1.9	17	93	0	57	12	24	27	36	1.91
31325537--31325664	61	2.1	61	82	5	152	44	12	4	38	1.63
31325674--31325707	16	2.2	16	89	5	52	55	2	0	41	1.15
31326296--31326410	60	1.9	59	81	8	135	42	4	11	41	1.60
31328817--31328968	43	3.5	43	77	7	173	34	26	12	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31330618--31330653	19	1.9	18	88	5	54	47	22	8	22	1.77
31331345--31331380	18	2.0	18	100	0	72	27	27	11	33	1.91
31332928--31333032	54	1.9	55	88	1	158	45	5	37	11	1.64
31333534--31333624	43	2.1	41	81	13	112	41	35	0	23	1.54
31333599--31333642	15	3.0	15	86	3	63	45	36	0	18	1.49
31333601--31333647	22	2.2	21	84	3	58	46	31	0	21	1.51
31334089--31334349	40	6.7	40	70	8	205	28	22	18	30	1.97
31334401--31334485	40	2.1	40	88	0	125	28	23	17	30	1.97
31334019--31334485	154	3.0	155	83	3	588	29	22	17	30	1.96
31334886--31334985	23	4.3	23	82	3	121	38	15	20	27	1.92
31334922--31334996	23	3.3	23	81	5	91	32	16	24	28	1.96
31343952--31344356	55	7.6	54	77	9	379	36	17	23	22	1.95
31343899--31344344	209	2.1	208	94	1	777	35	16	23	23	1.95
31344005--31344305	155	1.9	154	80	6	349	36	16	23	23	1.95
31348434--31348482	25	2.0	25	83	0	62	42	14	6	36	1.70
31354912--31355034	55	2.2	56	88	2	176	26	12	28	33	1.92
31354912--31355034	28	4.4	28	90	2	176	26	12	28	33	1.92
31354937--31355047	28	4.0	27	90	3	116	28	11	26	33	1.91
31356095--31356679	292	2.0	292	100	0	1170	31	18	20	29	1.96
31357055--31357211	43	3.7	43	82	4	174	24	18	26	30	1.98
31362071--31362158	40	2.2	40	87	4	133	22	20	27	29	1.99
31363334--31363376	18	2.4	18	77	14	52	46	6	9	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31363853--31364027	27	6.4	27	83	3	199	27	14	27	30	1.95
31363854--31364009	82	1.9	81	88	3	233	26	15	28	29	1.96
31363850--31364027	82	2.2	81	82	3	223	27	15	26	30	1.96
31365911--31365988	24	3.2	24	88	0	102	37	2	38	21	1.68
31367420--31367529	54	2.1	53	82	1	130	19	20	21	39	1.93
31367436--31367529	27	3.5	26	80	5	107	19	20	20	40	1.92
31368492--31368533	15	2.6	17	78	14	54	57	9	4	28	1.51
31373783--31373859	24	3.2	24	94	0	127	35	3	40	20	1.71
31375294--31375401	27	4.0	26	87	8	137	17	24	21	37	1.94
31383375--31383409	14	2.5	14	90	0	52	40	8	25	25	1.84
31383835--31383881	22	2.1	22	84	0	58	29	36	17	17	1.92
31384919--31384950	15	2.1	15	94	0	55	15	6	9	68	1.36
31388968--31389122	42	3.7	42	83	1	184	30	23	14	31	1.94
31392144--31392331	37	5.1	37	94	1	315	25	31	18	24	1.98
31392450--31392658	49	4.3	49	92	1	332	28	28	9	33	1.88
31396896--31396942	21	2.2	21	88	0	67	14	29	25	29	1.95
31402691--31402792	34	3.2	34	67	25	105	50	9	16	22	1.74
31402679--31402800	60	2.0	60	98	0	235	50	10	15	22	1.75
31408295--31408395	29	3.5	29	90	1	150	29	28	14	26	1.95
31419256--31419483	40	6.0	39	80	16	264	27	27	21	23	1.99
31419338--31419397	29	2.1	29	96	0	111	26	28	21	23	1.99
31419298--31419429	69	1.9	69	95	3	239	27	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31419259--31419477	109	2.0	108	89	4	334	26	27	21	23	1.99
31421293--31421438	37	3.9	37	91	0	220	25	29	19	25	1.99
31421649--31422086	47	9.1	47	82	6	527	25	29	12	31	1.93
31421679--31422086	98	4.2	98	95	1	698	25	30	12	31	1.93
31424277--31424625	85	4.1	85	99	0	680	26	26	8	38	1.85
31427485--31427546	27	2.3	27	94	0	106	32	12	14	40	1.84
31427526--31427943	81	5.2	81	81	6	449	29	10	21	38	1.87
31427499--31427943	27	16.6	27	78	8	378	30	10	20	38	1.87
31428273--31428333	28	2.2	28	93	0	104	29	36	11	22	1.90
31432571--31432807	39	6.1	39	92	0	384	22	28	26	22	1.99
31438417--31438701	39	7.1	39	84	8	356	23	29	25	21	1.99
31438409--31438701	77	3.6	78	81	10	374	23	28	25	22	1.99
31438554--31438652	49	2.0	49	94	0	171	22	29	25	23	1.99
31438518--31438691	88	2.0	88	91	0	285	21	29	26	22	1.99
31440942--31441022	40	2.0	40	100	0	162	34	27	2	35	1.70
31444336--31444649	39	8.1	39	91	0	513	22	29	25	21	1.99
31448754--31449045	40	7.3	39	81	5	334	27	28	20	23	1.99
31448754--31449028	80	3.5	80	95	0	471	27	28	20	23	1.99
31452892--31453136	49	4.9	49	82	4	285	29	26	18	25	1.98
31452905--31453136	100	2.3	99	84	2	304	29	26	18	25	1.98
31469507--31469553	22	2.2	22	84	3	60	21	36	29	12	1.91
31473363--31473407	23	2.0	23	82	8	56	37	8	13	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31473658--31473715	28	2.1	28	96	0	107	36	31	13	18	1.90
31477927--31477974	22	2.2	21	85	10	62	10	25	31	33	1.89
31486798--31486840	22	2.0	22	100	0	86	53	0	13	32	1.41
31491964--31492040	39	2.0	39	87	5	111	35	19	3	41	1.70
31493923--31493960	18	2.2	18	90	4	60	47	5	0	47	1.24
31493912--31493960	17	2.8	17	84	3	62	42	4	2	51	1.32
31494426--31494470	19	2.3	20	81	11	58	53	0	2	44	1.13
31496364--31496559	97	2.0	97	98	0	383	39	5	7	48	1.53
31500512--31500559	25	2.0	25	87	4	71	20	25	14	39	1.91
31500690--31500751	24	2.6	24	80	10	72	16	25	22	35	1.94
31500764--31500809	23	2.0	24	86	4	67	10	21	28	39	1.87
31504626--31504674	25	2.0	25	83	0	62	26	14	16	42	1.86
31505997--31506052	25	2.2	25	93	0	94	33	12	17	35	1.88
31511118--31511203	43	2.0	43	97	0	163	26	6	29	37	1.83
31527389--31527435	18	2.7	18	86	3	69	14	42	29	12	1.83
31531518--31531661	40	3.6	40	76	2	128	42	2	20	34	1.66
31531749--31531845	13	7.3	13	70	13	54	46	3	17	32	1.64
31531764--31531841	40	2.0	40	92	0	129	41	3	19	35	1.70
31537770--31537806	18	2.1	18	100	0	74	43	29	5	21	1.75
31537843--31537940	28	3.5	28	66	5	81	28	33	18	19	1.95
31537845--31537969	56	2.2	56	95	0	223	29	31	18	20	1.96
31537870--31537967	28	3.5	28	66	10	83	30	27	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31538175--31538405	40	5.8	40	95	0	399	26	29	23	20	1.99
31538465--31538555	38	2.4	38	83	0	119	27	30	16	25	1.97
31538465--31538575	38	2.9	38	82	0	105	26	26	17	30	1.97
31539788--31540059	135	2.0	135	95	1	492	36	19	13	30	1.90
31540659--31541204	141	3.8	141	85	9	763	28	30	8	33	1.86
31541026--31541058	16	2.1	16	94	0	57	21	33	15	30	1.94
31540659--31541204	47	11.3	47	82	9	661	28	30	8	33	1.86
31540892--31541199	157	2.0	157	96	0	562	27	30	8	33	1.87
31540932--31541152	110	2.0	110	94	0	388	27	30	8	33	1.87
31541079--31541154	22	3.3	22	67	16	64	27	31	9	31	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276