genome.fa.s12.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  154  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50078968--50079075	26	4.2	26	93	0	189	36	24	7	32	1.83
50080542--50080621	39	2.1	39	97	0	151	21	31	13	33	1.92
50086027--50086135	26	4.2	26	95	0	191	34	24	8	32	1.85
50089021--50089155	27	5.0	27	81	7	148	34	20	25	19	1.96
50089027--50089158	55	2.4	55	89	3	203	33	21	26	18	1.97
50092183--50092278	48	2.0	48	95	0	174	59	3	11	26	1.47
50094001--50094181	40	4.5	39	80	7	168	23	25	24	25	2.00
50096985--50097162	39	4.5	39	91	3	261	19	22	27	30	1.98
50099526--50099556	16	2.0	15	93	6	53	25	0	19	54	1.44
50100573--50100735	43	3.8	43	72	11	136	24	15	26	33	1.95
50105754--50105860	12	8.2	12	72	13	52	59	0	4	35	1.18
50105777--50105823	12	3.7	13	83	11	53	59	0	4	36	1.17
50105795--50105848	27	2.1	25	86	6	72	59	0	7	33	1.25
50105867--50105945	30	2.6	30	82	11	83	59	1	5	34	1.27
50105893--50105934	18	2.1	21	83	12	54	64	0	2	33	1.07
50105884--50105945	29	2.2	30	83	11	78	64	0	4	30	1.14
50107441--50107702	44	6.0	44	84	2	332	26	27	16	29	1.96
50107677--50107727	25	2.0	25	100	0	102	19	29	11	39	1.87
50107633--50107771	69	2.0	69	97	0	260	24	28	14	33	1.94
50107589--50107815	113	2.0	113	93	0	391	25	27	14	32	1.95
50107545--50107858	157	2.0	157	90	0	493	26	26	14	32	1.95
50107511--50107903	201	2.0	201	86	1	554	26	26	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50107474--50107943	245	1.9	245	87	1	692	27	26	15	31	1.95
50107702--50107987	44	6.5	44	87	0	410	27	25	14	31	1.95
50120067--50120102	14	2.6	14	91	8	56	50	0	8	41	1.33
50120141--50120206	19	3.3	19	69	19	53	59	3	0	37	1.13
50120398--50120455	30	1.9	30	82	0	71	55	6	13	24	1.63
50120942--50120975	7	4.7	7	85	7	50	32	14	11	41	1.82
50120942--50120975	15	2.4	14	90	5	50	32	14	11	41	1.82
50131750--50131981	46	5.0	46	89	1	313	38	14	24	22	1.91
50135336--50135405	34	2.1	34	97	0	131	31	28	27	12	1.93
50138432--50138616	40	4.7	40	82	6	216	24	28	22	24	1.99
50138432--50138616	79	2.3	80	79	8	207	24	28	22	24	1.99
50142433--50142462	6	4.8	6	95	4	51	13	0	0	86	0.57
50149218--50149255	20	1.9	20	88	0	58	63	28	0	7	1.23
50150195--50150352	43	3.7	42	77	4	147	30	27	17	25	1.97
50155401--50155433	17	1.9	17	93	0	57	6	12	0	81	0.85
50156898--50156943	20	2.3	21	82	14	62	26	17	28	28	1.98
50156936--50157074	60	2.3	60	82	6	156	27	19	25	28	1.99
50161080--50161132	15	3.9	13	80	17	56	7	16	0	75	1.02
50165096--50165125	15	2.0	15	100	0	60	40	26	0	33	1.57
50170162--50170206	22	2.0	22	100	0	90	42	0	17	40	1.50
50171385--50171499	29	4.0	29	82	8	121	28	30	13	26	1.94
50171379--50171486	29	3.8	29	82	6	130	27	29	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50171929--50171997	34	2.0	34	94	0	120	23	24	10	42	1.85
50173007--50173039	16	2.1	16	100	0	66	12	6	33	48	1.65
50176888--50177036	40	3.7	40	84	3	174	23	20	26	28	1.99
50176888--50177036	80	1.9	80	85	2	210	23	20	26	28	1.99
50181901--50181989	29	3.1	29	82	3	110	29	29	13	28	1.94
50184469--50184624	45	3.4	45	73	14	147	30	26	17	24	1.97
50188116--50188186	35	2.0	35	86	0	97	16	32	25	25	1.96
50189689--50189860	93	1.8	93	88	0	263	30	25	18	25	1.98
50189683--50189858	46	3.8	46	71	7	149	31	23	18	25	1.97
50198768--50198939	93	1.8	93	89	0	272	29	29	19	22	1.98
50198760--50198935	46	3.8	46	77	10	178	30	28	18	22	1.97
50200752--50200807	15	3.7	15	86	9	87	60	10	16	12	1.58
50203732--50203898	46	3.6	46	75	7	167	29	29	18	22	1.97
50203740--50203911	93	1.8	93	91	0	281	27	29	20	22	1.98
50214407--50214458	21	2.5	22	81	15	65	38	3	21	36	1.72
50215215--50215316	35	2.9	35	77	5	98	41	16	14	27	1.88
50216778--50216818	21	2.0	21	90	0	64	46	19	9	24	1.80
50220263--50220354	28	3.4	27	83	3	105	34	35	10	18	1.86
50221639--50221693	26	2.1	26	100	0	110	34	21	3	40	1.71
50221637--50221705	26	2.8	25	87	10	97	30	24	2	42	1.69
50222495--50222538	16	3.2	13	80	20	54	0	15	0	84	0.63
50222502--50222543	15	2.8	15	89	7	59	2	14	0	83	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50222563--50222611	21	2.2	22	82	7	55	71	2	2	24	1.07
50222923--50222978	22	2.5	22	79	2	58	35	5	7	51	1.52
50228750--50228784	13	2.7	13	100	0	70	45	0	5	48	1.26
50231067--50231113	17	2.9	17	78	12	55	48	0	17	34	1.47
50232887--50232918	15	2.1	16	94	5	57	43	0	15	40	1.47
50232904--50232943	20	2.0	20	85	9	55	42	2	12	42	1.56
50233278--50233373	18	5.3	18	83	5	122	40	11	12	35	1.79
50237741--50237896	77	2.0	76	95	1	276	53	2	10	33	1.50
50239520--50239606	27	3.2	27	85	9	115	34	21	24	19	1.96
50241818--50241878	16	3.6	16	78	21	63	42	3	16	37	1.64
50241818--50241867	15	3.0	15	83	16	55	42	2	16	40	1.59
50241837--50241874	20	1.9	20	89	10	60	36	5	15	42	1.70
50242212--50242304	18	5.2	18	83	5	107	39	10	13	35	1.80
50254137--50254165	15	2.0	15	93	6	51	6	13	20	58	1.58
50256268--50256322	24	2.3	24	83	0	74	49	23	1	25	1.60
50260691--50260802	27	4.2	26	86	7	143	37	21	24	16	1.94
50260691--50260802	54	2.1	54	88	3	163	37	21	24	16	1.94
50262190--50262246	25	2.3	24	93	6	96	19	38	5	36	1.74
50262190--50262253	25	2.6	25	90	5	85	17	42	4	35	1.70
50262560--50262610	9	5.7	9	86	6	59	54	23	9	11	1.66
50268526--50268637	27	4.2	26	85	7	134	39	22	22	16	1.92
50268526--50268637	54	2.1	54	86	3	154	39	22	22	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50270031--50270082	25	2.1	24	96	3	95	21	38	3	36	1.72
50270031--50270089	25	2.4	25	91	2	84	18	42	3	35	1.67
50294573--50294598	11	2.4	11	100	0	52	42	11	26	19	1.85
50294712--50294815	42	2.4	43	82	6	131	25	18	25	31	1.97
50294677--50294833	43	3.7	43	75	9	151	23	18	27	30	1.98
50300524--50300609	44	2.0	43	97	0	154	30	11	33	23	1.90
50303530--50303697	40	4.2	40	83	4	106	25	27	23	23	2.00
50303553--50303697	40	3.6	40	85	4	193	23	26	24	25	2.00
50304886--50304961	38	2.0	38	97	0	143	31	23	14	30	1.94
50319290--50319447	65	2.4	65	100	0	316	17	26	25	31	1.97
50322026--50322053	10	2.8	10	100	0	56	60	32	7	0	1.24
50326583--50326760	40	4.5	40	92	3	272	23	24	28	24	2.00
50338534--50339031	40	12.5	40	97	1	903	23	23	27	26	2.00
50341337--50341400	32	2.0	32	100	0	128	25	18	9	46	1.79
50345958--50346533	44	13.1	44	87	2	744	29	14	29	26	1.95
50349193--50349431	131	1.8	132	81	0	300	28	19	18	33	1.96
50351393--50351452	25	2.4	24	81	13	68	46	0	6	46	1.29
50351963--50351992	12	2.5	12	100	0	60	6	26	40	26	1.81
50355365--50355413	21	2.2	23	82	10	66	36	0	2	61	1.08
50368295--50368556	39	6.7	40	87	7	337	25	22	27	24	2.00
50381745--50381842	49	2.0	49	95	0	178	27	31	9	31	1.88
50383410--50383673	47	5.7	47	74	8	211	23	28	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50383417--50383673	140	1.8	140	85	1	363	23	27	19	29	1.98
50386599--50386766	40	4.2	40	90	2	223	27	27	21	23	1.99
50386639--50386766	40	3.2	40	96	0	229	27	28	21	22	1.99
50389691--50389798	54	2.0	53	82	8	130	34	21	16	27	1.95
50389696--50389799	27	3.9	27	78	6	113	33	20	17	28	1.95
50395075--50395109	12	2.8	12	95	4	61	0	20	34	45	1.51
50396962--50397003	13	3.1	13	80	12	57	21	33	26	19	1.97
50396944--50397018	28	2.6	28	73	10	80	24	22	25	28	2.00
50405164--50405205	17	2.5	17	92	0	66	42	4	9	42	1.58
50411354--50411416	30	2.1	30	91	5	101	25	4	11	58	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276