genome.fa.s9.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  100  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32803439--32803484	20	2.3	20	81	7	58	63	0	0	36	0.95
32803602--32803633	15	2.1	15	100	0	64	6	12	25	56	1.59
32806658--32806704	21	2.2	22	92	3	78	21	38	19	21	1.94
32820423--32820487	24	2.7	22	78	19	60	6	16	3	73	1.16
32828941--32829075	51	2.6	52	78	6	150	27	25	16	30	1.97
32835986--32836342	48	7.4	48	95	0	624	34	7	28	30	1.85
32836515--32836654	37	3.8	37	95	0	244	23	19	31	25	1.98
32839180--32839270	45	2.0	45	89	0	137	26	13	25	35	1.92
32855826--32855873	22	2.2	22	96	0	87	14	33	31	20	1.93
32860853--32860887	17	1.9	17	88	11	52	85	11	2	0	0.69
32860853--32860889	19	1.9	19	88	0	56	86	10	2	0	0.67
32874277--32874335	13	4.5	13	73	2	55	38	3	13	44	1.61
32874390--32874432	19	2.1	22	83	12	56	53	2	4	39	1.34
32875847--32875910	28	2.3	28	83	0	74	56	6	10	26	1.57
32875875--32876500	126	5.0	126	90	0	905	38	15	17	29	1.90
32879513--32879638	54	2.3	54	81	8	148	48	5	1	44	1.35
32879757--32879821	21	3.0	22	74	17	57	7	16	41	33	1.77
32880160--32880238	30	2.7	29	86	5	113	8	16	44	30	1.78
32880724--32880762	7	5.6	7	100	0	78	56	15	0	28	1.40
32881911--32881953	11	3.9	11	81	9	52	41	0	30	27	1.56
32881948--32881983	16	2.2	17	95	5	65	47	0	30	22	1.52
32885793--32885942	67	2.2	67	81	8	171	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32885817--32886000	67	2.8	64	77	8	194	29	17	29	22	1.97
32892369--32892414	23	2.0	23	84	12	60	45	10	6	36	1.65
32892376--32892420	23	2.0	23	82	8	56	40	13	8	37	1.76
32894557--32895217	331	2.0	331	99	0	1304	28	19	12	39	1.88
32895198--32895362	83	2.0	83	95	0	294	38	17	2	41	1.63
32900570--32900627	23	2.5	23	81	10	66	43	15	5	36	1.69
32903445--32903472	5	5.6	5	100	0	56	82	0	0	17	0.68
32906536--32906759	40	5.6	40	85	7	294	26	26	22	24	2.00
32906536--32906759	83	2.8	79	84	10	292	26	26	22	24	2.00
32911641--32911696	27	2.1	27	82	0	67	69	3	14	12	1.31
32916632--32916738	55	1.9	55	88	3	162	22	22	30	24	1.99
32924467--32924505	13	3.0	13	82	14	53	20	25	35	17	1.95
32929177--32929236	29	2.1	29	100	0	120	36	10	16	36	1.82
32931239--32931263	13	1.9	13	100	0	50	24	24	32	20	1.98
32936311--32936336	12	2.2	12	100	0	52	26	34	30	7	1.85
32937313--32937366	23	2.3	23	74	0	54	27	22	16	33	1.95
32942387--32942441	28	2.0	27	89	3	83	29	23	9	38	1.85
32950651--32951129	216	2.3	207	92	3	796	40	11	7	40	1.69
32952667--32952699	11	2.9	12	86	13	52	33	0	0	66	0.92
32952823--32952885	30	2.1	30	96	0	117	57	12	3	26	1.51
32955729--32955772	22	2.0	22	100	0	88	45	4	27	22	1.72
32961159--32961350	96	2.0	96	98	0	375	32	20	10	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32963145--32963306	46	3.5	46	79	6	157	29	19	27	24	1.98
32965572--32965730	65	2.4	66	78	3	169	27	22	13	35	1.92
32965574--32965747	33	5.3	33	82	3	163	27	23	12	36	1.91
32966614--32966742	62	2.1	62	97	0	240	36	6	12	44	1.67
32975612--32975637	13	2.0	13	100	0	52	30	7	0	61	1.24
32975929--32976148	117	1.9	115	80	8	257	30	10	10	48	1.70
32976787--32976816	12	2.5	12	100	0	60	46	0	6	46	1.29
32976966--32977029	21	3.0	21	72	16	60	60	0	3	35	1.12
32985778--32985830	26	2.0	26	92	0	88	26	3	18	50	1.64
32989222--32989419	105	1.9	102	81	11	233	32	15	26	25	1.95
32992406--32992444	17	2.3	17	86	0	51	35	2	0	61	1.10
32992395--32992464	13	5.1	13	74	19	54	34	1	0	64	1.03
32992395--32992459	19	3.5	19	75	12	64	35	1	0	63	1.04
32999812--32999848	15	2.5	16	87	12	53	21	24	10	43	1.84
32999812--32999861	15	3.5	15	79	15	52	20	24	14	42	1.88
33008020--33008330	89	3.6	87	70	14	228	35	19	16	27	1.94
33008109--33008633	87	6.0	86	80	10	487	33	17	20	28	1.95
33008007--33008556	176	3.1	175	81	8	613	35	18	19	27	1.95
33008109--33008633	174	3.0	174	79	7	557	33	17	20	28	1.95
33010161--33010199	17	2.3	17	86	0	51	35	2	0	61	1.10
33010150--33010219	13	5.1	13	74	19	54	34	1	0	64	1.03
33010150--33010214	19	3.5	19	75	12	64	35	1	0	63	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33010285--33010346	16	3.8	16	79	8	63	37	9	0	53	1.34
33010285--33010333	17	3.0	17	85	5	66	34	12	0	53	1.39
33010333--33010380	21	2.3	21	82	13	64	35	2	4	58	1.29
33011276--33011325	26	1.9	26	83	0	64	46	0	14	40	1.44
33018342--33018416	27	2.7	26	82	13	80	26	24	21	28	1.99
33022755--33022807	3	17.3	3	92	3	88	64	0	3	32	1.12
33023695--33023734	20	2.0	20	85	9	55	2	17	25	55	1.55
33026050--33026315	18	14.8	18	81	3	241	51	28	16	3	1.60
33026056--33026315	36	7.2	36	83	1	279	52	28	16	3	1.58
33026032--33026315	54	5.3	54	85	1	291	51	28	16	3	1.61
33029890--33030137	72	3.5	72	85	4	340	52	14	6	26	1.65
33030558--33030605	18	2.7	18	96	0	87	37	14	10	37	1.81
33031041--33031078	11	3.5	11	82	7	51	18	5	0	76	0.97
33034433--33034502	3	23.7	3	91	8	117	32	1	0	65	1.01
33034619--33034660	21	2.0	21	90	0	66	73	0	9	16	1.08
33036088--33036124	13	2.8	13	91	4	56	27	0	21	51	1.48
33036606--33036663	20	2.9	20	94	0	98	22	36	29	12	1.90
33037480--33037687	53	3.9	53	80	7	217	25	25	15	33	1.95
33037751--33037798	17	2.9	16	84	9	60	27	16	4	52	1.62
33042816--33042848	17	1.9	17	93	0	57	42	9	18	30	1.81
33045032--33045109	30	2.6	30	77	0	84	32	12	20	34	1.90
33052975--33053004	15	1.9	16	93	6	53	30	0	3	66	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33060029--33060080	24	2.2	24	93	6	90	23	3	21	51	1.63
33063061--33063137	19	4.0	19	74	19	63	32	1	6	59	1.31
33076234--33076303	28	2.5	28	88	9	99	27	14	27	31	1.95
33078359--33078465	25	4.3	25	83	4	108	31	16	14	36	1.90
33078363--33078461	50	2.0	50	86	4	137	33	17	15	34	1.91
33079379--33079410	16	2.0	16	100	0	64	18	12	12	56	1.67
33079963--33080002	19	2.1	19	90	0	62	62	0	5	32	1.17
33079972--33080045	29	2.6	28	77	8	78	56	1	9	32	1.40
33081950--33082006	21	2.7	21	84	13	64	68	1	12	17	1.29
33089799--33089842	19	2.3	19	96	0	79	31	0	34	34	1.58
33096321--33096459	72	1.9	72	85	2	190	55	7	5	30	1.52
33096629--33096713	33	2.6	33	86	0	98	25	16	45	11	1.81
33098949--33099418	207	2.3	208	92	0	789	42	7	10	38	1.68
33099855--33099883	2	15.0	2	92	7	51	51	0	0	48	1.00
33100764--33100823	28	2.2	29	82	11	81	63	0	0	36	0.95
33102460--33102501	14	2.9	14	89	3	57	4	9	9	76	1.15
33108204--33108237	5	6.6	5	86	6	50	14	2	0	82	0.79
33108208--33108238	16	1.9	16	100	0	62	12	3	0	83	0.75
33119472--33119512	3	13.7	3	100	0	82	31	0	0	68	0.90
33121347--33121429	18	4.8	18	68	24	70	49	3	2	44	1.32
33129069--33129125	22	2.6	23	78	10	57	43	15	5	35	1.70
33129083--33129125	23	1.9	22	85	4	59	39	13	6	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33130367--33130397	16	1.9	16	93	0	53	9	9	9	70	1.33
33135466--33135596	38	3.4	38	81	4	147	13	18	29	38	1.89
33135524--33135609	38	2.3	38	85	0	109	17	17	26	38	1.92
33135468--33135609	76	1.9	76	81	0	176	14	19	28	38	1.91
33138211--33138259	23	2.2	23	82	10	57	48	16	4	30	1.64
33138663--33138694	12	2.6	12	95	5	55	25	0	6	68	1.12
33138902--33138928	13	2.1	13	100	0	54	55	7	7	29	1.55
33140946--33141017	35	2.1	34	82	7	83	43	5	4	47	1.46
33147731--33148105	185	2.0	185	91	2	619	41	10	17	30	1.83
33150608--33150672	21	3.2	21	74	12	82	40	21	26	12	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284