Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  95  of  284  ( 34012 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31393899--31394290
45
8.4
44
66
14
187
28
23
18
29
1.98
31393979--31394525
232
2.4
232
82
2
634
27
21
19
31
1.98
31394421--31394526
45
2.4
44
84
4
124
31
19
19
29
1.97
31401255--31401298
8
5.5
8
88
0
52
54
2
0
43
1.12
31406604--31406637
3
11.7
3
93
6
61
67
0
0
32
0.91
31408288--31408342
20
2.7
20
86
8
67
29
5
5
60
1.42
31409687--31409729
21
2.0
21
100
0
86
34
13
0
51
1.42
31415735--31415795
21
2.8
21
76
14
70
13
24
27
34
1.93
31423739--31423825
21
4.0
23
70
15
67
37
24
21
16
1.93
31425094--31425144
24
2.1
24
100
0
102
27
29
0
43
1.55
31434472--31434529
20
2.8
22
82
7
68
62
3
0
34
1.12
31435115--31435151
16
2.2
18
85
9
51
27
0
0
72
0.84
31437927--31437961
16
2.2
16
100
0
70
31
17
11
40
1.85
31448226--31448267
14
2.9
15
82
3
50
50
2
0
47
1.14
31448566--31448598
17
1.9
17
100
0
66
36
21
0
42
1.53
31458417--31458495
41
1.9
42
82
7
99
21
27
24
26
1.99
31459671--31459732
15
3.9
15
73
10
52
4
22
3
69
1.22
31459759--31459797
8
4.8
8
83
3
51
43
0
0
56
0.99
31465008--31465074
33
2.0
33
100
0
134
34
11
11
41
1.79
31465475--31465518
21
2.1
21
86
0
61
2
34
0
63
1.07
31467109--31467257
80
1.9
81
84
4
203
34
8
13
42
1.75
31476184--31476217
13
2.6
13
86
13
52
17
0
2
79
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31476189--31476236
21
2.2
21
88
3
69
18
2
4
75
1.07
31476284--31476337
22
2.5
22
100
0
108
7
9
12
70
1.33
31477993--31478059
25
2.6
25
79
13
75
20
8
4
65
1.38
31478233--31478285
21
2.5
21
79
11
56
32
3
15
49
1.62
31481151--31481189
20
1.9
21
89
5
62
76
0
5
17
0.96
31488236--31488279
23
1.9
24
86
9
65
47
11
0
40
1.39
31490539--31490587
9
5.4
9
87
0
62
34
6
40
18
1.75
31490548--31490587
18
2.2
18
95
0
71
35
5
42
17
1.71
31490788--31490834
22
2.1
22
88
0
67
12
10
27
48
1.74
31490799--31490841
11
3.9
11
84
0
59
16
11
27
44
1.82
31491442--31491501
26
2.3
25
80
11
66
65
1
6
26
1.27
31494020--31494061
22
1.9
22
85
9
59
69
4
2
23
1.20
31494029--31494071
22
2.0
21
86
4
59
67
4
4
23
1.28
31497438--31497468
15
2.1
14
94
5
53
77
6
9
6
1.12
31497985--31498016
15
2.1
15
100
0
64
25
0
12
62
1.30
31503241--31503268
4
7.0
4
100
0
56
25
0
75
0
0.81
31506872--31506922
25
2.0
25
96
0
93
27
17
3
50
1.63
31509274--31509321
24
2.0
24
91
0
78
20
18
18
41
1.90
31509650--31509709
15
3.9
14
71
25
50
31
8
10
50
1.66
31509648--31509715
32
2.1
32
86
5
93
29
7
13
50
1.68
31513621--31513665
24
2.0
24
86
8
67
60
11
8
20
1.57
31517040--31517089
24
2.1
24
100
0
100
38
20
8
34
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31520446--31520470
13
1.9
13
100
0
50
16
12
0
72
1.13
31524846--31524870
13
1.9
13
100
0
50
40
28
24
8
1.83
31540823--31540861
21
1.9
20
89
5
60
48
0
12
38
1.42
31541488--31541539
24
2.2
23
83
10
61
21
25
21
32
1.98
31542842--31542894
26
2.0
26
88
0
79
22
20
37
18
1.94
31545061--31545105
17
2.6
17
100
0
90
26
13
15
44
1.83
31546123--31546334
91
2.3
91
80
4
239
26
14
24
34
1.94
31553247--31553288
18
2.5
17
80
7
50
52
7
0
40
1.29
31553712--31553780
18
3.9
17
79
9
68
73
7
1
17
1.12
31554706--31554785
39
2.0
41
83
11
105
56
7
2
33
1.41
31556033--31556072
21
1.9
21
84
0
53
30
2
22
45
1.66
31556648--31556815
43
4.0
43
76
7
146
26
13
25
33
1.93
31556648--31556794
43
3.4
44
79
5
158
27
14
25
33
1.94
31565612--31565719
56
1.9
56
96
0
198
22
27
14
35
1.93
31567574--31567667
40
2.3
40
83
3
118
32
29
14
22
1.94
31571381--31571415
17
2.1
17
94
0
61
34
2
31
31
1.73
31590066--31590173
26
4.2
26
93
0
189
32
6
25
36
1.81
31591905--31591952
21
2.3
21
85
7
62
12
2
54
31
1.49
31597113--31597220
26
4.2
26
93
0
189
30
8
25
35
1.86
31611009--31611060
16
3.3
15
76
10
50
34
5
25
34
1.80
31614847--31614988
39
3.6
39
93
0
230
20
19
28
30
1.97
31618015--31618103
46
1.9
46
100
0
178
20
22
30
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31619907--31619945
20
2.0
20
85
5
53
76
2
0
20
0.90
31627893--31628170
92
3.0
92
98
0
538
28
36
9
25
1.88
31631684--31631708
12
2.1
12
100
0
50
32
28
8
32
1.86
31640032--31640183
75
2.0
75
96
0
277
36
19
14
30
1.91
31641081--31641138
5
11.8
5
79
17
68
79
0
18
1
0.82
31641093--31641165
26
2.9
23
81
16
83
75
2
17
4
1.08
31641464--31641724
132
2.0
132
97
0
495
36
19
14
29
1.92
31643914--31643948
17
2.0
18
94
5
63
11
34
31
22
1.90
31649155--31649332
27
6.6
27
83
3
205
26
15
28
29
1.96
31649156--31649311
82
1.9
81
88
3
233
26
15
28
29
1.96
31649152--31649332
82
2.2
81
83
2
229
27
15
27
29
1.96
31651438--31651576
55
2.5
55
82
2
163
30
28
25
15
1.96
31653825--31653857
7
4.7
7
85
14
50
18
0
0
81
0.68
31655384--31655565
46
4.0
46
91
1
276
22
23
14
39
1.91
31657593--31657702
56
2.0
55
96
1
202
33
17
14
34
1.90
31666521--31666547
14
1.9
14
100
0
54
48
7
7
37
1.59
31699325--31699563
41
5.8
41
87
6
290
27
20
24
27
1.99
31699335--31699563
123
1.9
123
85
7
322
27
19
24
27
1.99
31701038--31701072
18
2.0
17
88
5
52
25
54
0
20
1.45
31701167--31701203
16
2.3
16
90
0
56
24
10
2
62
1.41
31701190--31701250
27
2.3
26
80
2
68
26
6
4
62
1.40
31702435--31702465
15
2.1
15
100
0
62
12
19
19
48
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31704963--31705020
30
1.9
30
89
0
89
20
32
29
17
1.95
31709263--31709296
16
2.1
17
88
5
52
8
5
0
85
0.75
31711121--31711173
26
2.0
26
82
7
63
26
15
20
37
1.92
31712659--31712766
26
4.2
26
90
0
171
35
23
7
34
1.83
31714640--31714701
6
10.3
6
84
10
74
72
11
1
14
1.19
31720809--31720955
43
3.4
43
71
12
124
25
18
25
31
1.98
31722551--31722620
6
11.7
6
75
13
56
74
4
1
20
1.07
31729636--31729750
55
2.1
56
82
8
137
34
22
24
18
1.96
31729661--31729750
27
3.2
27
81
7
101
32
24
24
18
1.97
31729856--31729920
28
2.3
28
94
0
112
30
7
27
33
1.85
31730369--31730461
28
3.3
28
93
0
159
31
7
25
35
1.84
31730708--31730739
8
4.0
8
91
0
55
3
25
25
46
1.67
31737564--31737678
55
2.1
56
83
8
146
34
21
24
19
1.96
31737589--31737678
27
3.2
27
85
7
119
32
23
24
20
1.98
31737784--31737848
28
2.3
28
100
0
130
30
6
27
35
1.81
31742111--31742147
4
9.2
4
100
0
74
51
24
0
24
1.49
31748791--31748825
6
5.5
6
90
10
52
14
5
0
80
0.89
31749861--31749900
14
2.9
14
92
0
62
30
22
7
40
1.81
31749863--31749908
14
3.4
14
82
8
51
30
23
6
39
1.80
31752674--31752712
3
12.7
3
94
5
69
66
2
0
30
1.05
31757686--31757719
16
2.1
17
88
5
52
55
8
11
23
1.63
31758129--31758169
4
9.5
4
87
12
55
70
0
2
26
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31758129--31758169
22
1.9
20
85
14
55
70
0
2
26
0.99
31758129--31758175
19
2.5
19
80
16
53
68
0
4
27
1.08
31758270--31758349
25
3.3
25
69
17
62
60
2
3
33
1.28
31758377--31758453
23
3.5
22
73
18
63
50
0
5
44
1.24
31758375--31758437
22
3.0
23
76
21
66
47
0
7
44
1.32
31760020--31760206
83
2.3
82
89
2
293
28
20
15
35
1.93
31760246--31760403
83
1.9
83
85
0
217
29
20
17
32
1.96
31760044--31760527
202
2.4
201
90
1
770
29
19
16
33
1.94
31760327--31760559
119
2.0
119
92
1
387
30
18
17
33
1.94
31766391--31766462
36
2.0
36
97
0
135
19
26
8
45
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284