genome.fa.s9.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  126  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41998919--41998952	17	2.0	17	100	0	68	41	17	23	17	1.90
42000738--42000767	15	2.0	15	100	0	60	40	13	0	46	1.43
42006247--42006275	12	2.5	12	94	5	51	6	24	6	62	1.45
42017211--42017250	20	2.0	20	85	9	55	30	22	5	42	1.75
42028508--42028753	123	2.0	123	100	0	492	28	19	12	39	1.88
42029584--42029625	22	2.0	22	90	4	68	11	40	26	21	1.88
42035965--42036017	15	3.5	15	81	0	52	24	64	7	3	1.37
42036280--42036377	39	2.4	42	83	6	121	27	45	7	19	1.76
42053046--42053070	12	2.1	12	100	0	50	24	40	20	16	1.91
42055714--42055758	17	2.5	18	89	7	65	20	44	17	17	1.87
42058536--42058750	27	7.9	27	78	8	123	33	11	16	38	1.84
42058597--42058750	54	2.9	54	80	1	184	31	10	18	39	1.85
42066347--42066407	30	2.0	30	83	0	77	31	22	8	37	1.84
42076679--42076854	46	3.8	46	79	12	216	20	21	29	28	1.98
42076676--42076847	93	1.8	93	96	0	317	20	21	29	27	1.98
42086775--42086888	43	2.7	42	77	5	122	30	20	21	27	1.98
42087381--42087443	30	2.1	30	96	0	117	20	4	20	53	1.63
42090961--42090990	6	5.0	6	91	0	51	16	0	3	80	0.85
42092250--42092389	20	7.0	20	72	6	113	39	17	30	12	1.87
42092253--42092404	40	3.8	40	91	0	223	39	16	30	13	1.87
42096871--42096903	10	3.3	10	95	0	57	24	27	15	33	1.95
42107338--42107371	17	2.0	17	88	11	52	23	14	8	52	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42108662--42109047	27	14.3	27	79	5	190	36	22	9	32	1.85
42108679--42109109	54	8.0	54	76	7	187	36	20	9	32	1.85
42108814--42109020	80	2.6	81	86	2	274	40	21	9	28	1.84
42108800--42109132	27	12.3	27	78	5	235	38	21	9	30	1.86
42109163--42109281	27	4.4	27	94	2	195	30	21	27	20	1.98
42110439--42110486	25	1.9	25	91	0	78	35	25	14	25	1.94
42110525--42110581	9	5.9	9	73	15	51	35	8	21	35	1.84
42110523--42110593	20	3.5	20	94	0	124	35	11	21	32	1.89
42110534--42110588	11	5.4	11	70	16	55	36	12	20	30	1.90
42118463--42118580	46	2.5	46	88	2	164	28	20	26	24	1.99
42121564--42121641	29	2.7	28	84	11	104	25	15	30	28	1.96
42121594--42121921	174	1.9	174	97	0	620	30	14	24	30	1.95
42128995--42129131	40	3.5	40	91	3	224	23	23	29	23	1.99
42152510--42152806	40	7.5	40	94	2	485	25	26	23	24	2.00
42152510--42152806	119	2.5	119	92	3	483	25	26	23	24	2.00
42165244--42165501	40	6.5	40	95	2	432	25	27	23	23	2.00
42172636--42172781	37	3.9	37	91	0	211	26	32	17	22	1.96
42172931--42173156	48	4.7	48	90	2	335	32	27	7	33	1.84
42172931--42173156	98	2.3	97	90	1	337	32	27	7	33	1.84
42175014--42175348	178	1.9	178	94	1	591	24	22	15	37	1.93
42178289--42178824	128	4.2	128	92	0	865	23	16	27	32	1.96
42178289--42178826	43	12.6	43	77	1	445	23	16	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42178799--42178895	51	1.9	51	89	0	149	22	18	28	29	1.97
42181086--42181116	15	2.1	15	100	0	62	12	29	19	38	1.89
42194119--42194382	40	6.7	40	89	5	360	25	21	27	25	1.99
42194119--42194415	119	2.5	118	81	9	338	26	21	27	25	1.99
42198292--42198459	66	2.6	66	96	0	302	32	25	17	24	1.97
42204826--42204850	12	2.1	12	100	0	50	56	12	8	24	1.62
42209767--42210348	47	12.4	47	92	0	948	28	30	8	32	1.87
42216840--42216885	22	2.1	22	100	0	92	30	17	21	30	1.96
42224686--42224799	41	2.8	41	76	10	124	22	18	25	33	1.97
42230519--42230616	43	2.3	43	80	3	117	32	22	15	29	1.95
42230544--42230626	43	1.9	43	85	0	112	32	25	14	27	1.95
42239000--42239056	26	2.1	27	96	3	107	43	3	17	35	1.66
42241430--42241479	23	2.3	23	89	6	77	38	0	2	60	1.09
42241494--42241535	17	2.4	18	80	11	52	21	2	2	73	1.06
42241507--42241562	26	2.2	25	81	12	60	21	5	1	71	1.15
42241494--42241554	26	2.3	25	86	11	77	22	3	3	70	1.17
42243833--42243962	37	3.3	40	75	7	131	32	22	18	26	1.97
42247279--42247384	53	2.0	53	94	0	185	29	19	24	26	1.99
42251946--42252121	46	3.8	46	78	12	198	21	21	28	29	1.98
42251943--42252114	93	1.8	93	93	0	299	21	21	28	28	1.99
42254001--42254038	20	1.9	20	84	10	51	18	5	2	73	1.14
42254085--42254131	19	2.5	19	86	6	60	36	10	4	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42255818--42255874	25	2.3	25	84	6	71	31	17	21	29	1.96
42260728--42260806	37	2.1	37	88	0	113	25	30	18	25	1.98
42260925--42261487	47	12.1	47	90	5	804	28	31	8	31	1.88
42260984--42261487	179	2.7	182	89	3	771	28	31	8	31	1.88
42264078--42264243	27	6.2	26	88	6	206	34	23	24	16	1.95
42264078--42264243	54	3.1	54	92	1	253	34	23	24	16	1.95
42264078--42264243	81	2.0	81	86	4	228	34	23	24	16	1.95
42272110--42272275	27	6.1	27	83	10	142	36	22	24	17	1.95
42272110--42272275	54	3.1	54	89	1	217	36	22	24	17	1.95
42272117--42272275	81	2.0	81	83	5	205	35	22	24	17	1.95
42278685--42278718	17	2.0	17	94	0	59	41	20	0	38	1.53
42287463--42287844	47	8.1	47	94	0	611	31	9	30	28	1.88
42287963--42288041	37	2.1	37	86	4	106	25	17	30	26	1.97
42311360--42311487	23	5.6	23	90	0	175	43	21	17	17	1.88
42312789--42312825	20	1.9	19	89	10	58	48	5	8	37	1.56
42313622--42313664	22	2.0	22	85	0	59	55	20	4	18	1.60
42314906--42314944	21	1.9	20	89	5	60	46	20	0	33	1.51
42319216--42319246	16	1.9	16	93	0	53	35	22	0	41	1.54
42319214--42319252	20	2.0	20	84	0	51	35	23	0	41	1.55
42319485--42319684	108	1.8	109	89	5	316	23	25	17	34	1.96
42319459--42319688	55	4.4	53	79	10	240	22	24	17	35	1.95
42326100--42326964	23	37.6	23	99	0	1685	43	21	17	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42328288--42328324	20	1.9	19	89	10	58	48	5	8	37	1.56
42329121--42329163	22	2.0	22	85	0	59	55	20	4	18	1.60
42330405--42330443	21	1.9	20	89	5	60	46	20	0	33	1.51
42334715--42334745	16	1.9	16	93	0	53	35	22	0	41	1.54
42334713--42334751	20	2.0	20	84	0	51	35	23	0	41	1.55
42334984--42336153	108	10.8	108	99	0	2306	22	25	17	34	1.95
42342453--42342561	50	2.1	52	81	6	125	33	11	15	39	1.84
42343136--42343195	31	2.0	31	83	9	79	51	15	1	31	1.53
42343298--42343351	21	2.7	21	86	8	69	42	16	25	14	1.87
42345909--42346007	29	3.0	34	75	17	118	23	14	22	40	1.90
42347835--42347894	5	12.0	5	85	0	75	38	18	1	41	1.60
42349915--42349941	7	3.9	7	100	0	54	44	14	0	40	1.46
42350671--42350798	32	4.0	32	87	0	202	35	11	7	45	1.70
42360747--42361445	349	2.0	349	97	0	1310	41	18	11	28	1.86
42361095--42363274	808	2.7	808	98	0	4144	39	18	12	29	1.87
42363843--42364190	70	5.0	70	89	1	538	40	17	10	31	1.83
42365425--42365564	70	2.0	70	98	1	273	49	12	1	36	1.50
42376458--42376555	39	2.5	39	94	0	169	23	28	23	24	2.00
42379991--42380070	40	2.0	40	92	0	133	18	40	5	36	1.73
42384727--42384780	16	3.4	16	86	0	81	50	22	20	7	1.73
42384727--42384780	8	6.8	8	77	8	56	50	22	20	7	1.73
42384996--42385120	29	4.3	29	89	1	198	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42392698--42393057	46	7.6	49	73	13	179	25	29	17	28	1.97
42392747--42392873	50	2.6	50	84	3	159	24	30	18	25	1.98
42392798--42393056	140	1.8	140	84	5	353	23	29	16	29	1.97
42399571--42399706	46	3.0	46	89	4	211	25	30	9	33	1.88
42399680--42400246	47	12.1	47	96	0	992	25	28	11	34	1.91
42407602--42408203	302	2.0	302	97	0	1123	28	25	15	30	1.96
42408166--42408496	166	2.0	166	95	0	599	29	22	17	30	1.97
42413116--42413300	40	4.7	40	81	5	178	27	28	20	24	1.99
42413083--42413300	40	5.5	39	77	7	165	25	27	20	25	1.99
42422021--42422092	29	2.5	28	90	2	108	26	15	30	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284