genome.fa.s9.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  132  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44135402--44135521	25	4.8	25	67	16	79	30	18	25	26	1.98
44138886--44138949	32	2.0	32	100	0	128	34	21	12	31	1.91
44146264--44146407	27	5.3	27	82	0	144	30	22	6	40	1.80
44146406--44146562	27	5.8	27	81	4	174	40	20	10	28	1.86
44146439--44146674	27	8.7	27	78	5	179	41	19	8	31	1.80
44146439--44146588	81	1.9	81	85	2	212	42	20	8	29	1.80
44147567--44147660	25	3.8	25	94	1	145	25	24	23	26	2.00
44147567--44147673	25	4.4	24	91	3	126	28	22	23	26	1.99
44147878--44147992	31	3.7	31	92	1	187	27	16	26	29	1.97
44153416--44153635	49	4.6	47	75	12	166	23	30	20	26	1.98
44159418--44159485	29	2.3	29	82	5	84	27	29	13	29	1.94
44159307--44159634	174	1.9	174	98	0	629	30	24	14	30	1.95
44159587--44159665	29	2.7	30	82	13	110	29	30	15	25	1.96
44169851--44170003	28	5.5	28	96	0	263	33	28	12	25	1.92
44174668--44174888	49	4.6	48	74	13	186	23	28	20	28	1.99
44174668--44174836	93	1.8	92	83	7	225	22	28	21	27	1.99
44174618--44174887	142	1.9	142	83	4	357	22	28	21	28	1.99
44182389--44182451	10	6.8	9	76	8	56	34	1	3	60	1.22
44182398--44182452	9	5.9	10	81	12	55	34	0	3	61	1.13
44182398--44182464	27	2.4	28	80	12	75	35	1	2	59	1.22
44182260--44182647	193	2.0	193	96	1	715	40	11	3	44	1.58
44182582--44182644	10	6.8	9	76	8	56	34	1	3	60	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44182591--44182645	9	5.9	10	81	12	55	34	0	3	61	1.13
44185671--44185821	43	3.5	44	71	13	134	32	23	19	24	1.97
44185784--44185858	37	2.0	37	92	0	123	30	20	24	25	1.98
44189973--44190012	16	2.4	17	95	4	73	32	12	20	35	1.90
44190413--44190460	24	2.0	24	91	0	78	37	18	22	20	1.94
44191875--44191941	33	2.0	33	100	0	134	35	16	17	29	1.92
44192325--44192394	35	2.0	35	91	0	113	42	12	17	27	1.85
44192941--44193160	113	1.9	113	87	1	325	31	15	15	36	1.90
44193371--44193412	20	2.1	20	95	0	75	61	4	7	26	1.42
44193870--44193914	23	2.0	23	100	0	90	48	17	15	17	1.81
44198539--44198578	21	1.9	21	89	0	62	27	17	32	22	1.96
44200311--44200422	27	4.2	26	82	5	116	35	22	24	17	1.95
44203962--44204055	27	3.4	27	80	10	102	17	25	23	34	1.96
44203981--44204074	27	3.5	26	85	7	125	15	23	21	39	1.92
44203962--44204080	54	2.2	54	83	5	152	17	24	21	36	1.95
44206095--44206133	19	2.1	19	100	0	78	15	48	15	20	1.81
44213822--44213882	12	5.0	12	91	2	86	3	47	29	19	1.65
44217138--44217225	27	3.3	27	84	4	115	19	23	22	34	1.97
44219410--44219441	11	2.9	11	100	0	64	75	0	0	25	0.81
44224524--44224605	38	2.2	38	97	0	155	47	19	7	25	1.75
44236250--44236332	31	2.7	30	94	3	141	28	26	15	28	1.96
44236552--44236621	25	2.8	25	88	0	104	27	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44237983--44238418	217	2.0	218	95	1	786	39	21	17	22	1.93
44238733--44238902	40	4.3	39	74	10	114	28	27	20	24	1.99
44238769--44238902	40	3.4	39	82	6	137	27	26	20	24	1.99
44246757--44246966	40	5.3	40	84	2	221	26	26	21	25	2.00
44248935--44249000	27	2.4	27	85	5	89	19	22	19	37	1.94
44249053--44249138	27	3.1	27	75	17	86	34	9	17	38	1.82
44249140--44249239	27	3.7	27	81	4	130	28	8	24	40	1.83
44249050--44249185	56	2.5	54	78	5	130	31	8	19	40	1.81
44249141--44249279	27	5.1	27	74	9	95	28	10	23	36	1.89
44249259--44249363	27	3.9	27	82	6	124	43	10	17	28	1.82
44249343--44249401	27	2.2	27	81	0	64	28	8	18	44	1.79
44251599--44251762	56	2.9	56	88	5	217	31	15	28	24	1.96
44251599--44251727	28	4.6	28	79	6	136	31	16	27	24	1.96
44251813--44251936	32	3.9	32	82	0	140	39	12	22	25	1.89
44261035--44261132	28	3.5	27	78	10	108	25	15	30	28	1.96
44261034--44261161	56	2.3	56	87	0	175	28	17	27	26	1.97
44261082--44261160	28	2.8	28	76	0	86	31	18	24	25	1.98
44261034--44261197	56	2.9	56	84	1	159	28	16	28	26	1.97
44269887--44270404	40	13.0	40	96	1	898	22	20	28	28	1.99
44279437--44279501	28	2.3	28	91	0	103	32	27	9	30	1.88
44279607--44279696	28	3.2	27	85	7	119	20	24	23	32	1.98
44279607--44279722	27	4.2	28	83	5	121	18	24	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44279607--44279722	55	2.1	56	84	7	148	18	24	21	35	1.96
44280785--44280818	10	3.3	10	84	8	50	29	8	8	52	1.62
44284828--44284866	20	2.0	20	100	0	78	35	10	20	33	1.86
44285803--44285859	12	4.7	12	93	4	87	75	3	7	14	1.14
44287408--44287457	24	2.1	24	96	0	91	36	30	22	12	1.90
44291190--44291247	10	5.7	10	72	11	55	31	25	12	31	1.92
44291191--44291251	20	3.1	19	75	17	61	31	22	11	34	1.90
44292498--44292569	35	2.1	35	97	0	135	27	27	25	19	1.99
44297639--44297690	12	3.8	13	85	15	61	75	1	11	11	1.14
44299906--44299955	15	2.9	17	77	17	50	74	2	14	10	1.16
44307393--44307432	14	2.9	13	88	7	53	10	35	7	47	1.65
44318515--44318569	20	2.8	20	85	0	74	25	27	18	29	1.98
44320162--44320212	11	4.7	11	83	7	52	78	5	5	9	1.08
44320172--44320212	11	3.7	11	84	9	57	78	7	2	12	1.06
44320183--44320213	12	2.6	12	100	0	62	80	6	0	12	0.89
44322730--44322784	20	2.8	20	85	0	74	23	29	18	29	1.98
44324624--44324659	14	2.6	14	95	0	63	41	2	36	19	1.66
44325684--44325737	20	2.7	20	82	0	63	24	20	18	37	1.94
44325684--44325757	30	2.5	30	86	8	98	21	20	18	39	1.93
44325684--44325748	20	3.2	20	71	16	53	23	21	16	38	1.93
44328446--44328470	13	1.9	13	100	0	50	64	8	0	28	1.22
44328695--44328750	21	2.7	21	86	2	69	37	19	25	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44330706--44330761	23	2.5	23	86	11	73	71	5	7	16	1.27
44331679--44331735	5	11.0	5	78	17	55	75	5	17	1	1.07
44331679--44331735	16	3.7	14	78	17	51	75	5	17	1	1.07
44331783--44331813	12	2.6	12	100	0	62	45	12	16	25	1.83
44340546--44340590	14	3.3	14	84	6	65	48	13	0	37	1.42
44341840--44341895	12	4.4	12	76	12	58	16	23	0	60	1.35
44341942--44341974	12	2.8	12	95	4	59	24	15	15	45	1.84
44342045--44342088	20	2.2	20	84	12	54	0	18	4	77	0.94
44342986--44343026	10	3.5	12	83	16	50	12	2	4	80	0.97
44342985--44343027	21	2.0	21	86	0	59	16	2	4	76	1.05
44344311--44344348	13	2.9	13	96	0	67	39	15	28	15	1.89
44351974--44352017	22	2.0	22	95	0	79	34	4	36	25	1.76
44352193--44352289	51	1.9	51	97	0	185	43	18	22	15	1.88
44353617--44353673	20	2.8	20	81	2	69	24	12	35	28	1.91
44354760--44355168	226	1.8	226	97	0	782	36	17	15	30	1.91
44357534--44357576	12	3.6	12	87	0	59	13	20	2	62	1.42
44357670--44357726	17	3.9	15	79	20	50	3	21	3	71	1.15
44357685--44357726	14	3.1	13	86	10	57	2	21	2	73	1.06
44357691--44357726	13	2.6	14	91	4	56	2	19	2	75	1.06
44360838--44361118	48	5.9	48	97	2	512	31	8	30	29	1.87
44361391--44361684	49	6.1	47	90	2	417	31	9	30	28	1.88
44361389--44361684	47	6.2	49	89	5	437	31	9	30	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44361389--44361684	96	3.1	96	89	5	456	31	9	30	28	1.88
44360568--44361669	551	2.0	551	96	1	2048	32	10	25	31	1.89
44365430--44365476	20	2.3	21	71	10	53	38	19	21	21	1.94
44369615--44369649	12	2.9	12	82	0	52	45	2	5	45	1.41
44373852--44373949	30	3.3	30	72	4	90	27	26	16	29	1.97
44377419--44377464	10	4.5	10	81	5	56	15	23	19	41	1.89
44377416--44377464	21	2.4	20	89	3	71	14	22	20	42	1.88
44377726--44377822	30	3.2	30	76	2	97	29	27	14	27	1.95
44380461--44380491	12	2.6	12	100	0	62	45	12	16	25	1.83
44380494--44380528	18	1.9	18	88	0	52	68	0	14	17	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284