genome.fa.s9.2.7.7.80.10.50.1000.279.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  279  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93924899--93925063	58	2.9	58	90	0	251	29	29	17	23	1.97
93925217--93926298	43	25.2	43	97	0	1939	32	30	23	13	1.93
93931215--93931356	40	3.4	42	76	4	135	30	23	15	30	1.95
93931680--93931780	51	2.0	51	98	0	193	29	15	8	45	1.77
93934844--93934902	30	2.0	30	93	0	100	23	25	18	32	1.97
93934874--93935077	40	5.1	40	99	0	399	23	25	21	30	1.99
93943105--93943144	20	2.1	19	86	13	55	65	2	0	32	1.06
93951598--93951791	96	2.0	96	98	0	379	44	9	19	26	1.82
93951834--93951902	5	14.0	5	85	8	88	37	1	2	57	1.22
93951813--93951902	23	3.8	24	81	10	98	38	1	3	56	1.23
93951843--93951867	13	1.9	13	100	0	50	32	4	0	64	1.12
93951836--93951897	18	3.3	18	82	8	88	37	1	3	58	1.24
93953022--93953053	6	5.3	6	92	0	55	18	18	15	46	1.84
93954207--93954264	29	2.0	29	100	0	116	13	27	13	44	1.82
93959424--93959482	29	2.0	29	96	0	109	47	27	8	16	1.76
93964086--93964150	31	2.1	31	94	0	112	47	15	4	32	1.66
93972923--93973128	28	7.4	28	91	2	281	32	28	13	25	1.94
93973581--93973616	2	18.0	2	88	0	54	47	2	2	47	1.31
93975214--93975250	9	4.1	9	89	0	56	37	0	2	59	1.12
93979258--93979302	22	2.0	22	100	0	90	48	8	4	37	1.55
93988700--93988744	20	2.2	20	84	7	56	26	6	26	40	1.81
93993199--93993286	44	2.0	44	100	0	176	27	9	20	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93995086--93995209	28	4.4	28	92	1	185	26	12	27	33	1.93
94009149--94009236	43	2.0	43	100	0	176	30	21	18	29	1.97
94018803--94018827	13	1.9	13	100	0	50	56	0	0	44	0.99
94020323--94020503	40	4.6	40	81	6	208	24	27	22	25	2.00
94020323--94020507	79	2.3	82	82	7	220	24	26	22	25	2.00
94024250--94024293	22	2.0	22	82	8	54	63	18	4	13	1.46
94026844--94026929	42	2.0	42	95	0	154	27	22	8	41	1.82
94030978--94031255	50	5.5	50	76	7	217	26	17	24	31	1.97
94031024--94031206	101	1.8	101	90	0	294	27	20	23	28	1.99
94030981--94031298	150	2.1	152	79	5	331	26	17	24	30	1.97
94032441--94032497	20	2.8	20	94	0	105	33	19	12	35	1.89
94032441--94032496	11	5.5	11	75	16	66	32	19	12	35	1.89
94034971--94035008	16	2.2	17	86	13	51	52	13	13	21	1.73
94036276--94036310	17	2.1	17	100	0	70	65	11	5	17	1.43
94037217--94037260	23	1.9	24	90	9	74	45	2	11	40	1.53
94037277--94037329	21	2.4	21	84	12	63	37	1	9	50	1.46
94045215--94045400	40	4.7	40	87	5	243	24	22	27	25	1.99
94045268--94045433	80	2.1	79	85	5	219	25	20	27	25	1.99
94051894--94051998	39	2.6	39	86	5	122	24	22	27	24	2.00
94051854--94052017	40	4.1	40	80	12	169	25	23	27	24	2.00
94051854--94052004	79	1.9	80	82	6	191	25	23	27	23	2.00
94057496--94057544	25	2.0	25	83	0	62	42	14	6	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94060139--94060198	25	2.4	25	88	0	84	28	23	20	28	1.99
94061681--94061720	19	2.1	19	86	9	55	17	40	27	15	1.89
94076990--94077040	20	2.7	18	82	14	59	37	21	0	41	1.54
94079312--94079474	35	4.6	35	77	3	166	39	30	12	17	1.86
94086214--94086240	11	2.5	11	100	0	54	85	0	0	14	0.61
94091258--94091375	63	1.9	62	96	1	218	44	13	20	21	1.85
94091572--94091625	6	8.5	6	84	11	63	0	51	0	48	1.00
94091573--94091625	15	3.5	15	78	0	52	0	50	0	49	1.00
94097892--94097926	17	2.1	17	89	10	54	65	0	0	34	0.93
94099619--94099671	16	3.2	16	86	5	61	69	11	0	18	1.17
94104130--94104161	12	2.7	12	95	0	55	21	31	31	15	1.95
94114386--94114434	25	2.0	25	95	0	89	34	12	14	38	1.83
94117958--94118135	97	1.9	94	83	8	234	29	18	28	23	1.98
94123685--94123989	46	6.6	45	84	7	373	42	13	23	20	1.88
94123695--94123989	92	3.2	92	87	0	430	42	13	23	20	1.88
94123695--94123989	138	2.1	138	91	0	464	42	13	23	20	1.88
94128179--94128223	20	2.2	20	80	7	56	62	8	8	20	1.51
94128681--94128727	19	2.3	20	76	20	53	38	4	17	40	1.69
94129045--94129081	19	1.9	19	88	0	56	37	0	2	59	1.12
94129048--94129086	16	2.4	17	82	8	53	35	0	2	61	1.10
94130161--94130194	6	5.5	6	93	6	59	17	17	17	47	1.84
94130418--94130468	18	2.8	19	82	8	70	31	5	11	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94130418--94130470	17	2.9	18	80	5	63	32	5	13	49	1.65
94135144--94135202	17	3.5	17	72	2	57	61	10	16	11	1.57
94135416--94135440	13	1.9	13	100	0	50	48	16	0	36	1.46
94135857--94135897	16	2.5	17	76	11	50	12	12	0	75	1.05
94135911--94135938	14	2.0	14	100	0	56	21	14	14	50	1.78
94143516--94143542	11	2.5	11	100	0	54	14	7	0	77	0.97
94146527--94146632	53	2.0	53	96	0	194	30	19	16	33	1.94
94149633--94149740	45	2.4	45	78	9	121	26	14	26	31	1.95
94152874--94152919	22	2.1	22	100	0	92	21	4	32	41	1.73
94153444--94153555	27	4.2	26	84	7	134	16	24	23	35	1.95
94157770--94157797	5	5.6	5	100	0	56	17	0	0	82	0.68
94162180--94162207	5	5.6	5	100	0	56	17	0	0	82	0.68
94171769--94171793	13	1.9	13	100	0	50	32	0	0	68	0.90
94175832--94175865	16	2.1	16	100	0	68	26	29	0	44	1.55
94182094--94182268	27	6.4	27	82	3	190	26	15	28	29	1.96
94182094--94182247	82	1.9	81	86	4	220	27	15	27	29	1.96
94182094--94182268	82	2.1	81	82	3	199	26	15	28	29	1.96
94184663--94184840	27	6.6	27	83	3	196	26	14	28	30	1.95
94184664--94184819	82	1.9	81	88	3	233	26	15	28	29	1.96
94192764--94192995	27	8.6	27	87	2	304	26	15	28	29	1.96
94192764--94192995	109	2.1	108	86	2	313	26	15	28	29	1.96
94194261--94194584	48	6.8	48	76	4	267	28	20	28	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94194264--94194584	144	2.2	144	83	3	378	28	19	28	23	1.98
94194314--94194585	96	2.8	96	85	3	361	28	19	29	23	1.98
94210349--94210391	20	2.2	20	86	0	59	37	4	13	44	1.65
94210413--94210453	20	2.0	21	85	4	57	39	9	9	41	1.71
94210493--94210537	23	1.9	24	86	13	67	35	6	2	55	1.38
94212752--94212967	40	5.4	40	87	3	278	25	27	21	25	2.00
94220853--94221166	48	6.7	48	69	13	161	28	19	29	21	1.98
94220853--94221166	140	2.2	140	80	7	341	28	19	29	21	1.98
94223088--94223155	29	2.3	29	100	0	136	32	19	20	27	1.97
94224775--94224811	18	2.1	18	94	0	65	45	2	29	21	1.65
94225684--94225750	29	2.2	29	84	5	80	32	10	13	43	1.78
94225705--94225763	29	2.0	30	90	3	93	28	8	15	47	1.74
94225709--94225772	29	2.2	29	83	8	76	31	10	12	45	1.77
94225907--94225992	31	2.9	30	78	3	93	34	15	12	37	1.85
94227703--94227801	37	2.6	37	87	3	135	34	28	0	37	1.58
94238275--94238356	45	1.9	42	87	9	121	45	3	14	36	1.63
94248262--94248313	26	1.9	26	84	7	68	48	5	15	30	1.68
94255568--94255603	15	2.3	15	85	4	54	61	16	0	22	1.35
94255584--94255646	24	2.6	24	87	0	99	55	20	0	23	1.43
94269480--94269553	37	2.0	37	92	5	123	20	10	25	43	1.84
94276553--94276627	39	1.9	39	100	0	150	36	6	24	33	1.81
94287440--94287471	2	16.0	2	93	0	55	0	3	50	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94290133--94290289	43	3.7	42	79	4	154	29	14	24	32	1.94
94299944--94300012	25	2.8	25	80	8	70	27	14	21	36	1.93
94299944--94300020	25	3.1	25	71	14	68	29	12	22	35	1.91
94303646--94303770	48	2.6	48	88	5	184	29	21	27	21	1.99
94303643--94303857	94	2.3	94	80	6	231	29	21	27	21	1.99
94303643--94303857	48	4.6	47	72	17	151	29	21	27	21	1.99
94305074--94305135	21	3.0	21	85	2	81	14	38	20	25	1.91
94310508--94310831	128	2.6	126	84	4	393	29	16	16	37	1.91
94313434--94313878	110	4.1	110	98	0	849	18	17	6	56	1.62
94319516--94319621	37	2.9	35	80	6	122	15	15	30	39	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284