genome.fa.s9.2.7.7.80.10.50.1000.245.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  245  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82221830--82221875	20	2.3	21	82	14	62	26	17	28	28	1.98
82221868--82222004	60	2.3	60	81	6	152	28	20	24	26	1.99
82221904--82222009	28	3.7	28	71	19	74	26	18	27	27	1.98
82221896--82222016	60	2.0	61	85	6	165	26	18	25	29	1.98
82225911--82225955	20	2.3	20	81	14	58	26	15	26	31	1.96
82227055--82227108	27	2.0	26	86	10	74	59	0	0	40	0.98
82229233--82229310	30	2.6	30	82	8	97	46	5	6	42	1.51
82229548--82229580	11	2.8	12	81	9	50	66	3	0	30	1.06
82231104--82231158	26	2.1	26	83	12	69	38	0	25	36	1.56
82242510--82242625	58	2.0	58	100	0	232	25	27	8	37	1.85
82252381--82252439	25	2.4	25	94	0	100	54	20	20	5	1.63
82256398--82256528	59	2.2	59	86	5	174	35	3	14	46	1.63
82256687--82256865	88	2.0	88	97	0	340	29	11	20	39	1.88
82261403--82261664	39	6.7	40	88	7	337	24	27	22	25	2.00
82269440--82269622	79	2.3	80	83	7	221	24	27	22	24	2.00
82269438--82269622	40	4.7	40	82	7	225	24	28	22	24	2.00
82273618--82273674	29	2.0	29	100	0	114	35	17	3	43	1.66
82276344--82276382	15	2.7	15	84	4	53	33	5	2	58	1.33
82277064--82277088	6	4.2	6	100	0	50	16	36	16	32	1.90
82281103--82281636	133	4.0	133	82	5	541	33	18	20	27	1.96
82285231--82285327	48	2.0	48	92	4	160	29	9	23	37	1.86
82297640--82297682	21	2.2	18	84	12	50	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82298696--82298722	8	3.4	8	100	0	54	88	0	0	11	0.50
82306699--82306909	100	2.1	100	97	0	395	44	15	21	18	1.87
82306909--82306962	28	1.9	28	96	0	99	42	1	33	22	1.64
82311716--82311806	43	2.1	43	95	0	164	30	14	25	29	1.95
82315055--82315142	45	2.0	43	90	2	131	23	20	38	15	1.91
82315057--82315150	44	2.1	45	86	2	127	26	19	39	13	1.89
82320195--82321289	44	25.0	44	96	1	1977	26	17	35	20	1.95
82328519--82328604	44	2.0	44	88	0	127	31	22	17	29	1.96
82328278--82328602	176	1.8	176	84	2	438	31	20	16	30	1.95
82334204--82334273	28	2.5	28	77	9	79	64	0	5	30	1.17
82338041--82338088	21	2.2	23	88	7	73	20	10	6	62	1.49
82338103--82338207	52	2.0	52	98	0	201	33	18	8	40	1.81
82338781--82338858	39	2.0	39	92	0	129	42	12	32	12	1.81
82340359--82340391	16	2.1	16	100	0	66	12	39	0	48	1.40
82348374--82348590	46	4.7	46	90	1	310	39	15	23	21	1.91
82348325--82348590	138	2.0	130	86	7	363	38	15	23	21	1.92
82348851--82348897	25	2.0	25	83	8	62	53	4	14	27	1.60
82350854--82350961	26	4.2	26	95	0	189	30	6	25	37	1.81
82357922--82358003	26	3.2	26	92	0	137	30	7	25	36	1.83
82371264--82371350	45	2.0	44	83	2	111	44	13	18	22	1.85
82375513--82375638	63	2.0	63	96	0	234	35	3	19	40	1.71
82376102--82376219	35	3.3	35	90	1	164	29	9	19	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82377623--82377759	38	3.6	38	80	5	141	36	27	16	18	1.93
82377669--82377771	38	2.7	37	80	12	120	32	25	20	22	1.98
82387057--82387213	38	4.0	38	76	8	122	31	26	21	21	1.98
82388823--82388870	23	2.1	23	88	7	71	16	33	20	29	1.95
82388837--82388882	23	2.0	23	82	0	56	17	28	23	30	1.97
82392092--82393284	49	24.6	49	97	1	2117	32	8	28	30	1.86
82393182--82393256	22	3.3	22	65	17	62	32	10	30	26	1.90
82398144--82398355	40	5.3	40	79	2	239	25	20	26	27	1.99
82398151--82398364	80	2.7	79	88	3	304	24	20	27	27	1.99
82407819--82407913	33	2.9	32	75	9	93	29	25	20	25	1.99
82413408--82413565	28	5.7	28	71	12	105	24	24	18	32	1.97
82413433--82413589	54	2.9	55	85	8	230	24	28	15	31	1.95
82413441--82413595	28	5.6	28	72	11	122	25	29	14	30	1.95
82420009--82420044	18	2.1	17	89	5	54	16	5	0	77	0.94
82424875--82424940	21	3.3	20	77	12	73	46	9	16	27	1.77
82424888--82424949	18	3.3	18	78	12	79	45	9	19	25	1.81
82426456--82426486	8	3.9	8	100	0	62	12	9	0	77	0.99
82426492--82426543	15	3.8	13	77	20	52	23	5	1	69	1.20
82426452--82426545	4	22.2	4	70	23	52	21	6	1	71	1.15
82432597--82432623	10	2.7	10	100	0	54	22	7	22	48	1.75
82433087--82433121	18	1.9	18	94	0	61	42	8	8	40	1.66
82436772--82436834	32	2.0	32	96	0	117	44	14	9	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82437086--82437247	43	3.8	43	82	2	193	32	22	15	29	1.95
82439314--82439464	77	1.9	78	97	1	286	21	12	11	53	1.70
82439438--82439510	6	13.8	5	77	17	51	16	1	8	73	1.13
82442312--82442441	50	2.6	49	90	1	188	30	28	16	24	1.97
82442312--82442498	101	1.9	99	86	2	266	28	28	17	25	1.98
82452669--82452883	46	4.6	46	76	8	175	22	27	20	29	1.98
82452661--82452883	94	2.4	94	83	5	263	22	28	20	28	1.99
82459543--82459724	54	3.4	54	92	3	294	51	9	22	17	1.73
82460969--82461185	40	5.5	40	85	3	271	22	23	29	25	1.99
82464144--82464490	47	7.4	47	92	0	550	33	8	30	27	1.86
82464152--82464274	22	5.3	22	64	11	66	34	9	29	26	1.88
82466125--82466178	3	18.7	3	75	21	53	3	27	0	68	1.06
82467238--82467295	26	2.2	27	81	12	75	36	27	10	25	1.89
82467399--82467514	28	4.2	28	88	2	164	17	25	21	35	1.95
82479644--82479698	28	2.0	28	100	0	110	45	7	7	40	1.60
82480449--82480491	21	2.2	19	83	8	50	62	0	0	37	0.95
82494817--82495013	108	1.8	108	84	2	270	32	26	18	22	1.97
82495384--82495451	34	2.0	34	97	0	127	27	11	16	44	1.82
82499309--82499359	27	1.9	28	84	11	72	47	5	5	41	1.52
82499786--82499820	17	2.0	18	88	5	54	54	0	0	45	0.99
82500262--82500313	19	2.9	17	81	10	59	40	11	15	32	1.83
82500272--82500315	19	2.1	22	88	12	67	40	9	15	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82500533--82500577	23	2.0	23	86	0	63	24	0	13	62	1.31
82501034--82501075	19	2.2	19	91	0	66	19	21	4	54	1.62
82501178--82501220	23	2.0	22	86	9	61	20	25	9	44	1.81
82502418--82502531	12	9.8	12	67	21	55	55	2	2	39	1.28
82502420--82502472	20	2.8	19	79	20	67	54	1	1	41	1.22
82502378--82502513	69	2.0	69	83	2	175	52	2	2	41	1.31
82504106--82504141	15	2.5	14	86	8	54	63	11	5	19	1.46
82507875--82507980	23	4.5	24	75	4	108	26	20	15	37	1.92
82507850--82507964	47	2.4	47	85	4	149	25	20	16	37	1.93
82507850--82507980	47	2.7	47	83	5	147	26	20	16	36	1.93
82511931--82511971	21	2.0	20	85	4	55	43	14	0	41	1.45
82516730--82516778	23	2.1	23	100	0	98	30	12	18	38	1.87
82520066--82520285	48	4.6	48	75	9	164	27	20	27	25	1.99
82520115--82520294	96	1.9	96	81	4	220	27	20	26	25	1.99
82526171--82526350	40	4.3	41	76	14	138	25	16	24	33	1.96
82529133--82529204	16	4.5	15	86	6	81	38	4	26	30	1.75
82529133--82529204	32	2.2	32	82	4	92	38	4	26	30	1.75
82529190--82529278	44	2.0	46	89	8	139	33	5	24	35	1.79
82529181--82529281	44	2.4	41	76	22	109	33	4	25	35	1.78
82531649--82531914	132	2.0	133	97	0	507	46	16	12	23	1.82
82539382--82539476	47	2.0	47	97	0	181	38	26	20	14	1.91
82541795--82541851	27	2.1	27	87	6	80	33	14	14	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82548027--82548206	45	4.0	45	99	0	351	36	2	8	53	1.44
82548181--82548255	35	2.3	34	82	11	86	46	0	0	53	1.00
82550613--82550719	54	2.0	53	98	0	196	33	14	19	30	1.92
82555595--82555636	4	10.5	4	100	0	84	50	23	0	26	1.50
82555666--82556491	33	25.0	33	100	0	1652	45	18	6	30	1.73
82560622--82560704	18	4.8	18	69	21	70	44	2	3	49	1.32
82560923--82560975	21	2.5	21	93	0	88	30	37	9	22	1.86
82564576--82564653	38	2.0	39	97	2	149	46	5	25	23	1.73
82565978--82566014	12	3.0	13	88	11	60	89	10	0	0	0.49
82565978--82566011	8	4.1	8	88	3	50	88	11	0	0	0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284