genome.fa.s9.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  173  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58205931--58205973	21	2.0	21	82	8	52	34	11	2	51	1.51
58219584--58219636	26	2.1	26	92	3	90	28	16	20	33	1.95
58219684--58219744	21	2.9	21	85	4	88	32	19	11	36	1.88
58219684--58219744	10	5.9	10	77	11	61	32	19	11	36	1.88
58225769--58225814	22	2.1	22	95	0	83	45	6	17	30	1.73
58225836--58225950	39	2.9	39	85	0	158	34	22	14	27	1.94
58226010--58226063	27	2.0	27	96	0	99	31	29	16	22	1.96
58240370--58240408	18	2.2	18	85	0	51	71	0	7	20	1.10
58240368--58240410	21	2.0	22	81	4	52	72	0	6	20	1.08
58255231--58255610	47	8.1	47	96	0	688	28	30	8	31	1.88
58256583--58256761	85	2.1	85	98	0	349	26	27	8	37	1.85
58258178--58258440	40	6.6	40	84	4	300	24	27	23	24	2.00
58258748--58258826	29	2.7	29	86	5	106	27	32	15	24	1.95
58258808--58258910	43	2.4	43	100	0	206	26	35	15	22	1.94
58260848--58261123	37	7.5	37	99	0	534	24	31	19	24	1.98
58261326--58261472	47	3.1	47	84	0	177	27	29	10	31	1.91
58267971--58268114	40	3.6	40	79	12	145	25	23	27	24	2.00
58268023--58268121	39	2.5	39	86	4	110	25	22	28	24	1.99
58267970--58268120	79	1.9	80	81	6	182	25	23	27	23	2.00
58269782--58269831	24	2.1	24	100	0	100	42	26	12	20	1.86
58271046--58271078	13	2.6	13	90	4	50	39	0	12	48	1.40
58271359--58271383	5	5.0	5	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58274884--58274925	20	2.0	21	90	4	68	14	40	21	23	1.90
58276190--58276279	6	15.2	6	78	11	87	15	5	0	78	0.92
58276190--58276279	22	4.1	22	75	13	87	15	5	0	78	0.92
58276196--58276266	16	4.6	16	83	11	85	15	5	0	78	0.92
58277768--58278031	40	6.7	40	89	5	360	25	27	21	25	1.99
58281500--58281532	13	2.6	13	90	4	50	39	0	12	48	1.40
58285822--58285862	19	2.2	19	90	0	64	51	0	9	39	1.35
58286186--58286358	89	1.9	89	96	0	319	32	17	19	30	1.95
58287680--58287819	39	3.5	40	94	2	223	18	22	28	30	1.98
58290172--58290470	150	2.0	150	98	0	580	35	9	18	36	1.84
58290478--58290518	19	2.2	19	90	0	64	51	0	9	39	1.35
58292506--58292718	39	5.5	39	97	0	390	17	23	30	28	1.97
58296419--58296444	11	2.4	11	100	0	52	7	0	0	92	0.39
58296835--58296875	19	2.2	19	90	0	64	51	0	9	39	1.35
58298861--58299034	39	4.5	39	96	0	312	18	23	29	28	1.98
58302627--58302823	94	2.1	94	88	0	286	27	15	23	32	1.95
58302665--58303100	44	9.5	44	69	11	180	30	16	21	30	1.96
58302758--58303107	89	3.9	89	72	8	247	32	16	21	29	1.96
58302987--58303107	45	2.7	44	76	3	100	33	13	22	30	1.92
58304199--58304236	19	2.1	18	90	5	58	23	0	2	73	0.95
58304264--58304322	3	20.0	3	72	10	50	27	5	1	66	1.22
58304435--58304493	6	9.5	6	74	7	55	16	5	0	77	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58304424--58304500	13	6.2	13	81	11	83	16	6	0	76	0.98
58307256--58307320	32	2.0	32	85	5	87	55	1	0	43	1.09
58311306--58311347	18	2.4	18	88	4	59	45	4	26	23	1.73
58317085--58317141	25	2.2	25	81	3	60	38	26	19	15	1.92
58322521--58322656	42	3.2	42	95	2	247	34	19	14	30	1.92
58322804--58322873	25	2.8	25	91	4	106	24	24	27	24	2.00
58323683--58323747	27	2.4	27	82	5	78	21	24	18	35	1.96
58323781--58324014	27	8.6	27	80	5	186	29	8	20	40	1.83
58323865--58324014	81	1.9	81	87	5	223	28	8	22	41	1.83
58323864--58324047	54	3.4	54	82	3	183	28	10	21	39	1.87
58323864--58324047	81	2.3	81	82	7	214	28	10	21	39	1.87
58323885--58324054	27	6.3	26	77	11	121	28	11	22	37	1.89
58324046--58324243	27	7.3	27	89	2	281	37	8	25	27	1.85
58324046--58324243	81	2.4	81	92	1	317	37	8	25	27	1.85
58330281--58330309	5	5.8	5	100	0	58	82	0	0	17	0.66
58332217--58332347	65	2.0	65	95	0	235	46	19	4	29	1.69
58334178--58334261	35	2.4	35	83	0	96	30	8	14	46	1.74
58341549--58341711	35	4.6	35	78	0	164	28	8	19	44	1.80
58341687--58341803	50	2.3	50	79	2	128	33	8	20	37	1.83
58348718--58348894	49	3.6	49	86	3	255	29	26	18	24	1.98
58348707--58348895	100	1.9	100	93	0	324	29	25	19	25	1.98
58362036--58362100	21	3.1	21	79	0	58	47	20	18	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58369634--58370271	319	2.0	319	100	0	1276	31	19	9	40	1.83
58375848--58375978	65	2.0	65	100	0	262	41	18	15	24	1.88
58377656--58377689	3	11.7	3	87	6	52	64	0	2	32	1.08
58377657--58377689	17	1.9	17	93	0	57	63	0	3	33	1.10
58379882--58380012	65	2.0	65	96	0	244	41	18	15	25	1.89
58380015--58380071	26	2.2	26	81	9	62	26	17	19	36	1.94
58383093--58383128	17	2.1	18	89	5	56	16	41	30	11	1.83
58385861--58385916	21	2.7	21	77	0	58	46	21	17	14	1.84
58392938--58393115	27	6.6	27	83	3	205	26	15	28	29	1.96
58392939--58393094	82	1.9	81	88	3	233	26	15	28	29	1.96
58392935--58393115	82	2.2	81	83	2	229	27	15	27	29	1.96
58401041--58401215	27	6.5	27	82	5	192	27	14	28	29	1.96
58401042--58401196	81	1.9	81	86	5	224	27	15	28	29	1.96
58401038--58401215	81	2.2	81	81	4	216	27	15	27	29	1.96
58403378--58404236	85	10.1	85	99	0	1709	38	8	26	26	1.84
58406416--58406851	47	9.1	47	87	5	602	31	12	30	26	1.93
58406584--58406659	24	3.2	24	62	23	61	28	13	32	25	1.93
58406825--58406915	46	2.0	46	84	0	119	32	9	31	25	1.89
58406438--58406900	245	1.9	244	87	5	681	31	12	30	25	1.93
58407066--58407174	37	2.9	37	90	0	164	23	19	30	26	1.98
58409416--58409448	17	1.9	17	93	0	57	33	15	15	36	1.88
58413854--58414007	40	3.9	40	89	0	229	22	22	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58414253--58414303	25	2.0	25	81	7	59	33	13	31	21	1.92
58419202--58419295	47	2.0	47	97	0	179	43	12	9	34	1.75
58429487--58429516	15	1.9	16	93	6	53	20	20	6	53	1.67
58430117--58430184	31	2.2	31	81	5	84	42	8	29	17	1.79
58430456--58430616	46	3.5	45	85	9	186	20	28	21	29	1.98
58431336--58433536	838	2.6	839	99	0	4334	32	15	16	35	1.91
58451537--58451660	63	2.0	63	100	0	248	35	10	14	39	1.81
58452087--58452173	43	2.0	44	88	2	131	32	14	28	24	1.95
58452132--58453120	90	11.0	90	90	0	1485	29	14	28	27	1.95
58452084--58453082	45	22.2	45	63	18	222	30	14	28	27	1.95
58454820--58454957	67	2.0	70	91	7	228	35	10	13	41	1.78
58455451--58456168	90	8.0	90	92	0	1094	31	14	26	27	1.95
58455451--58456890	180	8.0	177	79	8	1038	31	15	26	27	1.96
58455843--58456807	315	3.1	314	84	3	1219	31	15	26	27	1.95
58455441--58456890	270	5.4	267	77	10	1111	31	15	26	27	1.95
58456158--58456612	90	5.1	90	90	1	705	31	15	26	26	1.96
58455408--58456845	45	32.0	45	67	16	422	31	15	26	27	1.95
58456389--58456839	226	2.0	227	92	2	755	31	15	26	26	1.96
58456605--58456890	91	3.1	91	89	2	423	32	15	27	25	1.95
58455466--58456852	135	10.3	134	68	15	524	31	14	26	27	1.95
58458154--58458256	53	2.0	52	86	1	143	38	16	31	13	1.87
58459014--58459159	74	2.0	74	97	0	274	26	21	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58459229--58459749	90	5.8	90	91	0	837	29	14	27	27	1.96
58459752--58460664	90	10.1	90	91	0	1333	30	14	27	26	1.95
58459437--58460060	315	2.0	315	92	0	1050	30	14	26	28	1.95
58459347--58460154	405	2.0	405	90	1	1289	30	14	27	27	1.95
58464224--58464540	80	4.0	80	97	0	589	27	20	25	26	1.99
58464224--58464575	40	8.8	40	86	0	479	26	20	26	26	1.99
58468154--58468977	45	18.3	45	66	15	352	31	14	26	26	1.95
58468253--58468506	134	1.9	135	93	0	438	31	14	25	27	1.95
58468157--58468600	224	2.0	225	91	0	719	30	14	26	27	1.95
58468382--58469023	90	7.1	90	90	0	946	31	14	27	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284